SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47836,_gap_,47943,47353,57756 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47836 - Retroviral matrix proteins
47943 - Retrovirus capsid protein, N-terminal core domain
47353 - Retrovirus capsid dimerization domain-like
57756 - Retrovirus zinc finger-like domains

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

9 sequences contain the 47836,_gap_,47943,47353,57756 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Dasypus novemcinctus 76_2: ENSDNOP00000030048

Dasypus novemcinctus 76_2: ENSDNOP00000032376

Ovis aries 76_3.1: ENSOARP00000011852

Ovis aries 76_3.1: ENSOARP00000015559

Ovis aries 76_3.1: ENSOARP00000015561

Ovis aries 76_3.1: ENSOARP00000017088

Oryctolagus cuniculus 76_2: ENSOCUP00000026567

Cavia porcellus 76_3: ENSCPOP00000019175

Cavia porcellus 76_3: ENSCPOP00000018781