SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47836,_gap_,47943,47353 superfamilies in all genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47836 - Retroviral matrix proteins
47943 - Retrovirus capsid protein, N-terminal core domain
47353 - Retrovirus capsid dimerization domain-like

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


Domain combination graphics and links

19 sequences contain the 47836,_gap_,47943,47353 domain architecture in all genomes.

Add higher domain architectures which include the chosen architecture.

Click on a domain architecture to see the domain assignment details.
The key to the domain colours is at the bottom of the page.


Sarcophilus harrisii 76_7.0: ENSSHAP00000000064

Sarcophilus harrisii 76_7.0: ENSSHAP00000000300

Sarcophilus harrisii 76_7.0: ENSSHAP00000000400

Sarcophilus harrisii 76_7.0: ENSSHAP00000000651

Ovis aries 76_3.1: ENSOARP00000010006

Ovis aries 76_3.1: ENSOARP00000011007

Ovis aries 76_3.1: ENSOARP00000011616

Ovis aries 76_3.1: ENSOARP00000015065

Ovis aries 76_3.1: ENSOARP00000015074

Ovis aries 76_3.1: ENSOARP00000019101

Cavia porcellus 76_3: ENSCPOP00000020268

Cavia porcellus 76_3: ENSCPOP00000015685

Cavia porcellus 76_3: ENSCPOP00000020410

Cavia porcellus 76_3: ENSCPOP00000014648

Cavia porcellus 76_3: ENSCPOP00000019075

Cavia porcellus 76_3: ENSCPOP00000015467

Cavia porcellus 76_3: ENSCPOP00000015186

Cavia porcellus 76_3: ENSCPOP00000015077

Cavia porcellus 76_3: ENSCPOP00000017414