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Domain combinations for IP3 receptor type 1 binding core, domain 2 superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a IP3 receptor type 1 binding core, domain 2 domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   32 17
Pan_troglodytes_76_2.1.4   (Chimpanzee)   12 6
Gorilla_gorilla_76_3.1   (Western gorilla)   18 10
Pongo_abelii_76_2   (Sumatran orangutan)   9 5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7 4
Papio_anubis_76   (Olive baboon)   13 7
Macaca_mulatta_76_1   (Rhesus monkey)   20 11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   22 14
Otolemur_garnettii_76_3   (Small-eared galago)   13 7
Microcebus_murinus_76_1   (Gray mouse lemur)   9 5
Rattus_norvegicus_76_5.0   (Norway rat)   18 9
Mus_musculus_76_38   (House mouse)   22 12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8 4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10 6
Cavia_porcellus_76_3   (Domestic guinea pig)   10 6
Oryctolagus_cuniculus_76_2   (Rabbit)   13 7
Ochotona_princeps_76   (American pika)   10 5
Tupaia_belangeri_76   (Northern tree shrew)   3 2
Sus_scrofa_76_10.2   (Pig)   7 5
Bos_taurus_76_3.1   (Cattle)   16 8
Ovis_aries_76_3.1   (Sheep)   12 6
Vicugna_pacos_76_1   (Alpaca)   5 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   10 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   14 7
Ailuropoda_melanoleuca_76_1   (Giant panda)   12 7
Canis_familiaris_76_3.1   (Dog)   18 10
Felis_catus_76_6.2   (Domestic cat)   12 6
Equus_caballus_76_2   (Horse)   35 18
Myotis_lucifugus_76_2.0   (Little brown bat)   8 5
Pteropus_vampyrus_76_1   (Large flying fox)   9 6
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   6 4
Procavia_capensis_76_1   (Cape rock hyrax)   9 5
Loxodonta_africana_76_3   (African savanna elephant)   12 8
Echinops_telfairi_76   (Small Madagascar hedgehog)   11 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12 6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   12 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   12 8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   12 6
Ornithorhynchus_anatinus_76_5   (Platypus)   15 12
Saccoglossus_kowalevskii_v3.0 20 15
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   10 6
Gallus_gallus_76_4   (Chicken)   8 5
Anas_platyrhynchos_76_1.0   (Mallard)   10 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   10 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 5
Anolis_carolinensis_76_2.0   (Green anole)   10 7
Xenopus_laevis_   (African clawed frog)   4 2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   8 5
Latimeria_chalumnae_76_1   (Coelacanth)   10 6
Lepisosteus_oculatus_76   (Spotted gar)   16 9
Gadus_morhua_76_1   (Atlantic cod)   16 9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   38 24
Takifugu_rubripes_76_4   (Torafugu)   104 53
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   15 8
Oryzias_latipes_76_1   (Japanese medaka)   17 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   17 10
Poecilia_formosa_76   (Amazon molly)   17 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   18 10
Astyanax_mexicanus_76   (Mexican tetra)   14 10
Danio_rerio_76_9   (Zebrafish)   20 10
Oikopleura_dioica 3 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   14 7
Ciona_intestinalis_76   (Vase tunicate)   4 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2 2
Adineta_vaga 13 8
Octopus_bimaculoides_280 4 3
Crassostrea_gigas_22   (Pacific oyster)   10 8
Lottia_gigantea_   (Owl limpet)   6 4
Helobdella_robusta_ 8 8
Capitella_sp._I_ 7 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 2
Heliconius_melpomene_   (Postman butterfly)   3 2
Bombyx_mori_   (Domestic silkworm)   3 2
Nasonia_vitripennis_   (Jewel wasp)   2 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8 8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 2
Linepithema_humile_v1.1   (Argentine ant)   3 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 2
Atta_cephalotes_v1.1 3 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4 3
Lucilia_cuprina   (Australian sheep blowfly)   3 2
Drosophila_grimshawi_1.3 3 2
Drosophila_willistoni_1.3 3 2
Drosophila_pseudoobscura_2.13 3 2
Drosophila_persimilis_1.3 2 1
Drosophila_suzukii 6 2
Drosophila_yakuba_1.3 3 2
Drosophila_simulans_1.3 2 1
Drosophila_sechellia_1.3 5 4
Drosophila_melanogaster_76_5   (Fruit fly)   14 12
Drosophila_erecta_1.3 3 2
Drosophila_ananassae_1.3 3 2
Drosophila_virilis_1.2 3 2
Drosophila_mojavensis_1.3 3 2
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   3 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 2
Tribolium_castaneum_3.0   (Red flour beetle)   3 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 2
Acyrthosiphon_pisum_   (Pea aphid)   2 1
Rhodnius_prolixus_22 2 1
Daphnia_pulex_   (Common water flea)   10 9
Strigamia_maritima_22 3 2
Sarcoptes_scabiei 2 1
Tetranychus_urticae_   (Two-spotted spider mite)   2 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 1
Pristionchus_pacificus_ 4 3
Onchocerca_volvulus_22 2 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6 5
Caenorhabditis_japonica_ 3 2
Caenorhabditis_brenneri_ 6 4
Caenorhabditis_remanei_ 3 2
Caenorhabditis_elegans_76_235   (Roundworm)   16 10
Caenorhabditis_briggsae_2 5 3
Trichinella_spiralis_22 3 2
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 2
Hydra_vulgaris 2 1
Amphimedon_queenslandica 7 6
Trichoplax_adhaerens_ 6 4
Proterospongia_sp._ATCC_50818_ 12 8
Monosiga_brevicollis_ 6 4
Sphaeroforma_arctica_JP610_ 3 3
Capsaspora_owczarzaki_ATCC_30864_ 5 3
Phycomyces_blakesleeanus_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Dictyostelium_discoideum 2 1
Dictyostelium_purpureum_ 2 1
Volvox_carteri_f._nagariensis_ 2 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 2 1
Thecamonas_trahens_ATCC_50062_ 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 2 1
Phytophthora_infestans_T30-4_ 1 1
Paramecium_tetraurelia_ 45 27
Tetrahymena_thermophila_SB210_1_ 32 20
Ichthyophthirius_multifiliis_strain_G5_ 25 17
Naegleria_gruberi_ 10 5
Guillardia_theta_CCMP2712_v1.0_ 9 7
Emiliania_huxleyi_CCMP1516_ 2 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   13 7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   14 8
Trypanosoma_brucei_Lister_427_v4.1 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   13 7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   12 6
Gorilla_gorilla_69_3.1   (Western gorilla)   13 7
Pongo_abelii_69_2   (Sumatran orangutan)   9 5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 4
Macaca_mulatta_69_1   (Rhesus monkey)   7 4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8 5
Otolemur_garnettii_69_3   (Small-eared galago)   11 6
Microcebus_murinus_69_1   (Gray mouse lemur)   9 5
Rattus_norvegicus_69_3.4   (Norway rat)   13 7
Mus_musculus_69_38   (House mouse)   14 7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8 4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8 6
Cavia_porcellus_69_3   (Domestic guinea pig)   10 6
Oryctolagus_cuniculus_69_2   (Rabbit)   9 5
Ochotona_princeps_69   (American pika)   10 5
Tupaia_belangeri_69   (Northern tree shrew)   3 2
Sus_scrofa_69_10.2   (Pig)   7 5
Bos_taurus_69_3.1   (Cattle)   12 6
Vicugna_pacos_69_1   (Alpaca)   5 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   10 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   12 6
Ailuropoda_melanoleuca_69_1   (Giant panda)   11 6
Canis_familiaris_69_3.1   (Dog)   11 6
Felis_catus_69   (Domestic cat)   7 4
Equus_caballus_69_2   (Horse)   13 7
Myotis_lucifugus_69_2.0   (Little brown bat)   8 5
Pteropus_vampyrus_69_1   (Large flying fox)   9 6
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   6 4
Procavia_capensis_69_1   (Cape rock hyrax)   9 5
Loxodonta_africana_69_3   (African savanna elephant)   8 5
Echinops_telfairi_69   (Small Madagascar hedgehog)   11 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   12 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   11 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12 6
Ornithorhynchus_anatinus_69_5   (Platypus)   10 8
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   8 5
Gallus_gallus_69_2   (Chicken)   10 5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   10 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 3
Anolis_carolinensis_69_2.0   (Green anole)   10 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8 5
Latimeria_chalumnae_69_1   (Coelacanth)   9 5
Gadus_morhua_69_1   (Atlantic cod)   16 9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18 11
Takifugu_rubripes_69_4   (Torafugu)   16 8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   15 8
Oryzias_latipes_69_1   (Japanese medaka)   15 9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   17 10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   17 9
Danio_rerio_69_9   (Zebrafish)   13 7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 1
Ciona_intestinalis_69   (Vase tunicate)   2 1
Drosophila_melanogaster_69_5   (Fruit fly)   3 2
Caenorhabditis_elegans_69_215   (Roundworm)   3 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   34 18
Homo_sapiens__(NCBI_version)   (Human)   17 9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12 6
Loa_loa_v3.3_(Request)   (Eye worm)   4 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4 3
Uniprot_2018_03_genome 4540 2924
NCBI_2017_08_genome 9242 5346
Protozoadb_2010_08_(Protozoadb) 3 3
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 272 212
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 288 288
STRING_v9.0.5_(STRING) 385 228

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