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Domain combinations for Typo IV secretion system protein TraC superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Typo IV secretion system protein TraC domain in that genome.

Complete genomes
Genome     Number   Proteins
Mus_musculus_76_38   (House mouse)   1 1
Drosophila_ananassae_1.3 2 2
Dictyostelium_purpureum_ 1 1
Medicago_truncatula_   (Barrel medic)   1 1
Trichomonas_vaginalis_ 1 1
Selenomonas_sputigena_ATCC_35185 1 1
Prosthecochloris_aestuarii_DSM_271 2 2
Zobellia_galactanivorans 1 1
Sulfurospirillum_deleyianum_DSM_6946 1 1
Campylobacter_hominis_ATCC_BAA-381 2 2
Campylobacter_lari_RM2100 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Geobacter_sp._M21 1 1
Geobacter_metallireducens_GS-15 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Aromatoleum_aromaticum_EbN1 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Thiomonas_arsenitoxydans 1 1
Leptothrix_cholodnii_SP-6 1 1
Burkholderia_phytofirmans_PsJN 3 3
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 3 3
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_necator_N-1 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_ambifaria_AMMD 2 2
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 2 2
Burkholderia_vietnamiensis_G4 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Acidovorax_sp._JS42 2 2
Acidovorax_citrulli_AAC00-1 1 1
Comamonas_testosteroni_CNB-2 1 1
Pusillimonas_sp._T7-7 3 3
Advenella_kashmirensis_WT001 2 2
Taylorella_equigenitalis_MCE9 1 1
Bordetella_petrii_DSM_12804 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Nitrosomonas_eutropha_C91 3 3
Methylovorus_glucosetrophus_SIP3-4 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Asticcacaulis_excentricus_CB_48 1 1
Caulobacter_sp._K31 1 1
Phenylobacterium_zucineum_HLK1 2 2
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 1 1
Sphingobium_sp._SYK-6 1 1
Sphingobium_japonicum_UT26S 2 2
Sphingobium_chlorophenolicum_L-1 2 2
Sphingomonas_sp._MM-1 2 2
Sphingomonas_wittichii_RW1 1 1
Hirschia_baltica_ATCC_49814 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Ruegeria_sp._TM1040 1 1
Roseobacter_denitrificans_OCh_114 1 1
Gluconacetobacter_xylinus_NBRC_3288 1 1
Acidiphilium_multivorum_AIU301 3 3
Acidiphilium_cryptum_JF-5 1 1
Polymorphum_gilvum_SL003B-26A1 1 1
Xanthobacter_autotrophicus_Py2 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Ochrobactrum_anthropi_ATCC_49188 2 2
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 1 1
Sinorhizobium_medicae_WSM419 1 1
Sinorhizobium_meliloti_AK83 2 2
Rhizobium_etli_CIAT_652 2 2
Rhizobium_leguminosarum_bv._viciae_3841 2 2
Agrobacterium_tumefaciens_str._C58 2 2
Agrobacterium_radiobacter_K84 3 3
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 3 3
Mesorhizobium_sp._BNC1 2 2
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 2 2
Oligotropha_carboxidovorans_OM4 2 2
Nitrobacter_hamburgensis_X14 1 1
Bartonella_tribocorum_CIP_105476 6 6
Bartonella_henselae_str._Houston-1 2 2
Bartonella_grahamii_as4aup 6 6
Bartonella_quintana_str._Toulouse 2 2
Oceanimonas_sp._GK1 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_furnissii_NCTC_11218 1 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_aquaeolei_VT8 1 1
Alcanivorax_borkumensis_SK2 1 1
Halomonas_elongata_DSM_2581 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_albilineans_GPE_PC73 5 5
Halothiobacillus_neapolitanus_c2 1 1
Thioalkalivibrio_sp._K90mix 1 1
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 2 2
Proteus_mirabilis_HI4320 1 1
Edwardsiella_tarda_EIB202 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Dickeya_zeae_Ech1591 1 1
Pectobacterium_sp._SCC3193 1 1
Pectobacterium_atrosepticum_SCRI1043 1 1
Erwinia_tasmaniensis_Et1/99 2 2
Cronobacter_turicensis_z3032 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 2 2
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_boydii_CDC_3083-94 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 1 1
Acinetobacter_baumannii_ATCC_17978 1 1

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Strains
Genome     Number   Proteins
Arcobacter_butzleri_7h1h 1 1
Campylobacter_jejuni_subsp._jejuni_00-2544 1 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1 1
Campylobacter_jejuni_subsp._jejuni_S3 1 1
Campylobacter_jejuni_subsp._jejuni_IA3902 1 1
Campylobacter_jejuni_subsp._jejuni_81-176 2 2
Campylobacter_coli_CVM_N29710 1 1
Neisseria_gonorrhoeae_TCDC-NG08107 1 1
Burkholderia_phenoliruptrix_BR3459a 2 2
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_sp._KJ006 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_J2315 2 2
Burkholderia_multivorans_ATCC_17616 2 2
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Bordetella_parapertussis_Bpp5 3 3
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Nitrosomonas_sp._AL212 2 2
Phaeobacter_gallaeciensis_DSM_17395 1 1
Phaeobacter_gallaeciensis_DSM_26640 3 3
Octadecabacter_arcticus_238 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Paracoccus_aminophilus_JCM_7686 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_fredii_USDA_257 2 2
Sinorhizobium_fredii_HH103 3 3
Sinorhizobium_meliloti_GR4 2 2
Sinorhizobium_meliloti_Rm41 1 1
Sinorhizobium_meliloti_SM11 2 2
Sinorhizobium_meliloti_BL225C 1 1
Sinorhizobium_meliloti_1021 1 1
Rhizobium_etli_CFN_42 2 2
Rhizobium_etli_bv._mimosae_str._Mim1 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2 2
Mesorhizobium_australicum_WSM2073 1 1
Oligotropha_carboxidovorans_OM5 2 2
Oligotropha_carboxidovorans_OM5 2 2
Bradyrhizobium_sp._BTAi1 1 1
Bartonella_australis_Aust/NH1 3 3
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 4 4
Bartonella_quintana_RM-11 2 2
Aggregatibacter_actinomycetemcomitans_ANH9381 2 2
Aggregatibacter_actinomycetemcomitans_D11S-1 2 2
Vibrio_fischeri_ES114 1 1
Shewanella_sp._ANA-3 1 1
Stenotrophomonas_maltophilia_D457 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_9a5c 3 3
Xanthomonas_campestris_pv._vesicatoria_str._85-10 3 3
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Thioflavicoccus_mobilis_8321 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 2 2
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_2300/99_Alcoy 2 2
Rahnella_aquatilis_HX2 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Dickeya_dadantii_Ech586 2 2
Dickeya_dadantii_3937 1 1
Pantoea_ananatis_AJ13355 1 1
Cronobacter_sakazakii_ATCC_BAA-894 1 1
Shigella_flexneri_2a_str._2457T 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_JJ1886 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_UMN026 2 2
Escherichia_coli_HS 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Methylophaga_sp._JAM7 2 2
Cycloclasticus_zancles_7-ME 1 1

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Others
Genome     Number   Proteins
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 357 357
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protozoadb_2010_08_(Protozoadb) 2 2
Uniprot_2018_03_genome 3723 3716
TargetDB__(Targets) 5 5
NCBI_2017_08_genome 14975 14968
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 1 1
STRING_v9.0.5_(STRING) 176 176

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