SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Formin homology 2 domain (FH2 domain) superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Formin homology 2 domain (FH2 domain) domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   111 111
Pan_troglodytes_76_2.1.4   (Chimpanzee)   24 24
Gorilla_gorilla_76_3.1   (Western gorilla)   33 33
Pongo_abelii_76_2   (Sumatran orangutan)   23 23
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   27 25
Papio_anubis_76   (Olive baboon)   27 27
Macaca_mulatta_76_1   (Rhesus monkey)   46 46
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   55 55
Otolemur_garnettii_76_3   (Small-eared galago)   23 23
Microcebus_murinus_76_1   (Gray mouse lemur)   18 17
Rattus_norvegicus_76_5.0   (Norway rat)   34 34
Mus_musculus_76_38   (House mouse)   62 62
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   18 17
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   23 23
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   18 18
Cavia_porcellus_76_3   (Domestic guinea pig)   19 19
Oryctolagus_cuniculus_76_2   (Rabbit)   27 27
Ochotona_princeps_76   (American pika)   24 22
Tupaia_belangeri_76   (Northern tree shrew)   14 12
Sus_scrofa_76_10.2   (Pig)   34 34
Bos_taurus_76_3.1   (Cattle)   33 33
Ovis_aries_76_3.1   (Sheep)   30 30
Vicugna_pacos_76_1   (Alpaca)   13 12
Tursiops_truncatus_76_1   (Bottlenose dolphin)   23 21
Mustela_putorius_furo_76_1.0   (Domestic ferret)   27 27
Ailuropoda_melanoleuca_76_1   (Giant panda)   23 23
Canis_familiaris_76_3.1   (Dog)   46 46
Felis_catus_76_6.2   (Domestic cat)   21 21
Equus_caballus_76_2   (Horse)   33 33
Myotis_lucifugus_76_2.0   (Little brown bat)   20 20
Pteropus_vampyrus_76_1   (Large flying fox)   25 25
Sorex_araneus_76_1   (European shrew)   15 14
Erinaceus_europaeus_76   (Western European hedgehog)   27 19
Procavia_capensis_76_1   (Cape rock hyrax)   19 17
Loxodonta_africana_76_3   (African savanna elephant)   28 28
Echinops_telfairi_76   (Small Madagascar hedgehog)   17 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   36 34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   14 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   25 20
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   28 28
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   31 31
Ornithorhynchus_anatinus_76_5   (Platypus)   27 26
Saccoglossus_kowalevskii_v3.0 44 44
Petromyzon_marinus_76_7.0   (Sea lamprey)   17 17
Meleagris_gallopavo_76_2   (Turkey)   22 22
Gallus_gallus_76_4   (Chicken)   21 21
Anas_platyrhynchos_76_1.0   (Mallard)   15 15
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   19 18
Ficedula_albicollis_76_1.0   (Collared flycatcher)   169 169
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   25 25
Anolis_carolinensis_76_2.0   (Green anole)   29 29
Xenopus_laevis_   (African clawed frog)   13 13
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   22 22
Latimeria_chalumnae_76_1   (Coelacanth)   26 26
Lepisosteus_oculatus_76   (Spotted gar)   27 27
Gadus_morhua_76_1   (Atlantic cod)   26 26
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   41 39
Takifugu_rubripes_76_4   (Torafugu)   105 105
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   31 31
Oryzias_latipes_76_1   (Japanese medaka)   28 28
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   30 30
Poecilia_formosa_76   (Amazon molly)   32 32
Oreochromis_niloticus_76_1.0   (Nile tilapia)   44 44
Astyanax_mexicanus_76   (Mexican tetra)   40 40
Danio_rerio_76_9   (Zebrafish)   55 55
Oikopleura_dioica 9 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   18 17
Ciona_intestinalis_76   (Vase tunicate)   14 14
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   21 19
Adineta_vaga 32 32
Octopus_bimaculoides_280 41 41
Crassostrea_gigas_22   (Pacific oyster)   16 16
Lottia_gigantea_   (Owl limpet)   11 11
Helobdella_robusta_ 19 19
Capitella_sp._I_ 13 13
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 8
Heliconius_melpomene_   (Postman butterfly)   8 8
Bombyx_mori_   (Domestic silkworm)   14 13
Nasonia_vitripennis_   (Jewel wasp)   5 5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   22 22
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20 20
Linepithema_humile_v1.1   (Argentine ant)   11 11
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   13 13
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9 9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 9
Atta_cephalotes_v1.1 9 9
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8 8
Lucilia_cuprina   (Australian sheep blowfly)   13 12
Drosophila_grimshawi_1.3 11 11
Drosophila_willistoni_1.3 8 7
Drosophila_pseudoobscura_2.13 9 8
Drosophila_persimilis_1.3 8 7
Drosophila_suzukii 12 12
Drosophila_yakuba_1.3 10 10
Drosophila_simulans_1.3 8 8
Drosophila_sechellia_1.3 8 7
Drosophila_melanogaster_76_5   (Fruit fly)   35 35
Drosophila_erecta_1.3 8 8
Drosophila_ananassae_1.3 9 9
Drosophila_virilis_1.2 11 11
Drosophila_mojavensis_1.3 10 10
Megaselia_scalaris_22 3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   7 7
Anopheles_darlingi_22   (American malaria mosquito)   8 8
Anopheles_gambiae_49_3j   (African malaria mosquito)   11 11
Tribolium_castaneum_3.0   (Red flour beetle)   8 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   8 8
Acyrthosiphon_pisum_   (Pea aphid)   9 9
Rhodnius_prolixus_22 8 8
Daphnia_pulex_   (Common water flea)   11 11
Strigamia_maritima_22 13 13
Sarcoptes_scabiei 9 9
Tetranychus_urticae_   (Two-spotted spider mite)   9 9
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   9 9
Pristionchus_pacificus_ 9 9
Meloidogyne_incognita_   (Southern root-knot nematode)   5 5
Meloidogyne_hapla_ 11 11
Onchocerca_volvulus_22 12 12
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   17 17
Caenorhabditis_japonica_ 14 14
Caenorhabditis_brenneri_ 20 20
Caenorhabditis_remanei_ 15 15
Caenorhabditis_elegans_76_235   (Roundworm)   13 13
Caenorhabditis_briggsae_2 10 10
Trichinella_spiralis_22 9 9
Hymenolepis_microstoma_ 5 5
Echinococcus_multilocularis_ 9 9
Echinococcus_granulosus_ 11 11
Taenia_solium_   (Pork tapeworm)   14 14
Schistosoma_mansoni_ 7 7
Mnemiopsis_leidyi   (Sea walnut)   10 10
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 12 12
Nematostella_vectensis_1.0   (Starlet sea anemone)   15 14
Hydra_vulgaris 7 7
Amphimedon_queenslandica 14 14
Trichoplax_adhaerens_ 7 7
Proterospongia_sp._ATCC_50818_ 11 11
Monosiga_brevicollis_ 10 10
Sphaeroforma_arctica_JP610_ 9 9
Capsaspora_owczarzaki_ATCC_30864_ 7 7
Conidiobolus_coronatus_NRRL28638_v1.0 3 3
Mortierella_verticillata_NRRL_6337_ 9 8
Phycomyces_blakesleeanus_ 10 10
Rhizopus_oryzae_RA_99-880_ 14 14
Mucor_circinelloides_ 10 10
Rhizomucor_miehei_CAU432_ 12 12
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 3 3
Ustilago_maydis_ 3 3
Mixia_osmundae_IAM_14324_v1.0 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Melampsora_laricis-populina_ 3 3
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 5 5
Microbotryum_violaceum_22 4 4
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 4 4
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 5 5
Hydnomerulius_pinastri_v2.0 4 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 3
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 4 4
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 4 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6 6
Galerina_marginata_v1.0 6 6
Hebeloma_cylindrosporum_h7_v2.0 8 8
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 4 4
Stereum_hirsutum_FP-91666_SS1__v1.0 5 5
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 5 5
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 2 2
Postia_placenta_ 4 4
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 5 5
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5 5
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 4 4
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 4 4
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 4 4
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 6 6
Neurospora_tetrasperma_ 3 3
Neurospora_discreta_FGSC_8579_ 6 6
Neurospora_crassa_OR74A_ 7 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 4 4
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 7 7
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 6 6
Trichoderma_atroviride_ 4 4
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3 3
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 6 6
Setosphaeria_turcica_v1.0 5 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 5 5
Stagonospora_nodorum_ 5 5
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 2 2
Septoria_musiva_v1.0 5 5
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Paracoccidioides_brasiliensis_Pb18_ 4 4
Coccidioides_posadasii_RMSCC_3488_ 4 4
Coccidioides_immitis_RS_ 5 5
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 5 5
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 3 3
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 3 3
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 3 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2 2
Candida_dubliniensis_CD36_ 6 6
Candida_tropicalis_MYA-3404_ 5 5
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 6 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 4 4
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 2 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2 2
Candida_glabrata_CBS138 2 2
Kluyveromyces_thermotolerans_CBS_6340 2 2
Lachancea_kluyveri_ 2 2
Kluyveromyces_waltii 2 2
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 2 2
Saccharomyces_mikatae_MIT 3 3
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 2 2
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 8 8
Allomyces_macrogynus_ATCC_38327_ 12 12
Spizellomyces_punctatus_DAOM_BR117_ 6 6
Dictyostelium_discoideum 19 19
Dictyostelium_purpureum_ 13 13
Entamoeba_dispar_1.2 8 8
Entamoeba_invadens_1.2 8 8
Entamoeba_histolytica_1 9 9
Selaginella_moellendorffii_ 17 17
Pinus_taeda   (Loblolly pine)   8 8
Picea_abies   (Norway spruce)   9 9
Eucalyptus_grandis_v201   (Rose gum)   49 48
Theobroma_cacao_B97-61/B2_v1   (Cacao)   27 27
Gossypium_raimondii_v221 93 93
Citrus_clementina_v165 24 24
Citrus_sinensis_v154   (Sweet orange)   29 29
Thellungiella_halophila_v173 28 28
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   44 44
Capsella_rubella_v183 22 22
Arabidopsis_lyrata_   (Lyrate rockcress)   31 29
Arabidopsis_thaliana_10   (Thale cress)   40 38
Carica_papaya_   (Papaya)   26 26
Medicago_truncatula_   (Barrel medic)   44 44
Phaseolus_vulgaris_v186   (French bean)   39 39
Glycine_max_v109   (Soybean)   66 66
Cucumis_sativus_v122   (Cucumber)   28 28
Fragaria_vesca_   (Wild strawberry)   22 22
Malus_domestica_v196   (Apple)   55 55
Prunus_persica_v139   (Peach)   21 21
Linum_usitatissimum_v200   (Flax)   51 51
Manihot_esculenta_v147   (Cassava)   33 33
Populus_trichocarpa_v156   (Black cottonwood)   51 51
Vitis_vinifera_   (Wine grape)   18 17
Mimulus_guttatus_v140   (Spotted monkey flower)   33 32
Solanum_lycopersicum_v.2.3   (Tomato)   29 29
Solanum_tuberosum_   (Potato)   41 40
Actinidia_chinensis_Hongyang_ 40 40
Aquilegia_coerulea_v195 34 34
Triticum_urartu_22 19 19
Triticum_aestivum_22   (Bread wheat)   72 72
Aegilops_tauschii_22 23 23
Brachypodium_distachyon_   (Stiff brome)   30 30
Oryza_barthii_22   (African wild rice)   39 39
Oryza_meridionalis_22 61 61
Oryza_glumaepatula_22 55 55
Oryza_glaberrima   (African rice)   41 41
Oryza_punctata_22 53 53
Oryza_nivara_22 65 65
Oryza_brachyantha_22   (Malo sina)   29 29
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   208 208
Oryza_sativa_v193   (Rice)   208 208
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   28 27
Panicum_virgatum_v202   (Switchgrass)   58 58
Setaria_italica_v164   (Foxtail millet)   34 34
Zea_mays_subsp._mays_   (Maize)   50 50
Zea_mays_v181   (Maize)   54 54
Sorghum_bicolor_   (Sorghum)   40 39
Musa_balbisiana   (Balbis banana)   45 44
Musa_acuminata_22   (Wild Malaysian banana)   36 34
Amborella_trichopoda_22 15 15
Physcomitrella_patens 10 9
Coccomyxa_subellipsoidea_sp._C-169_v2 11 11
Asterochloris_sp._Cgr/DA1pho_v1.0 4 3
Chlorella_variabilis_sp._NC64A_ 8 8
Chlorella_vulgaris_ 8 8
Volvox_carteri_f._nagariensis_ 21 21
Volvox_carteri_v199 18 18
Chlamydomonas_reinhardtii_4.0 10 10
Ostreococcus_sp._RCC809_ 3 3
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 6 6
Bathycoccus_prasinos_ 10 10
Micromonas_sp._RCC299_ 7 7
Micromonas_pusilla_CCMP1545_v3.0 18 18
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 9 7
Thecamonas_trahens_ATCC_50062_ 24 24
Bigelowiella_natans_CCMP2755_22 26 25
Cyanophora_paradoxa_ 4 4
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 4 4
Leishmania_infantum_JPCM5_2.4 3 3
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3 3
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 9 9
Trypanosoma_congolense_2.4 4 4
Trypanosoma_brucei_gambiense_v4.1 5 5
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 27 26
Aureococcus_anophagefferens_ 14 14
Albugo_laibachii_22 7 7
Pythium_iwayamai_DAOM_BR242034_22 9 8
Pythium_arrhenomanes_ATCC_12531_22 9 9
Pythium_ultimum_v1.7-2 12 11
Pythium_aphanidermatum_DAOM_BR444_22 8 8
Pythium_irregulare_DAOM_BR486_22 9 8
Pythium_vexans_DAOM_BR484_22 8 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   9 9
Phytophthora_sojae_1.1 10 10
Phytophthora_infestans_T30-4_ 10 10
Phytophthora_capsici_ 7 7
Hyaloperonospora_arabidopsidis_22 8 7
Phaeodactylum_tricornutumCCAP_1055/1 7 7
Fragilariopsis_cylindrus 14 14
Thalassiosira_pseudonana_CCMP1335 13 13
Perkinsus_marinus_ATCC_50983_ 18 18
Paramecium_tetraurelia_ 19 19
Tetrahymena_thermophila_SB210_1_ 6 6
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Cryptosporidium_hominis 5 5
Cryptosporidium_muris 8 8
Cryptosporidium_parvum_Iowa_II 8 8
Neospora_caninum 7 7
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 5 5
Toxoplasma_gondii_GT1 3 3
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 4 4
Plasmodium_vivax_SaI-1_7.0 3 3
Plasmodium_knowlesi_strain_H_ 3 3
Plasmodium_yoelii_ssp._yoelii_1_ 4 4
Plasmodium_chabaudi_ 4 4
Plasmodium_berghei_ANKA_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 35 34
Naegleria_gruberi_ 15 15
Trichomonas_vaginalis_ 9 9
Guillardia_theta_CCMP2712_v1.0_ 11 9
Emiliania_huxleyi_CCMP1516_ 47 47
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 1 1
Conexibacter_woesei_DSM_14684 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_rhodesiae_NBB3 1 1
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_marinum_M 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Heliobacterium_modesticaldum_Ice1 1 1
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Krokinobacter_sp._4H-3-7-5 1 1
Lacinutrix_sp._5H-3-7-4 1 1
Pirellula_staleyi_DSM_6068 1 1
Treponema_azotonutricium_ZAS-9 1 1
Treponema_primitia_ZAS-2 1 1
Helicobacter_felis_ATCC_49179 2 2
Desulfovibrio_aespoeensis_Aspo-2 1 1
Geobacter_lovleyi_SZ 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 2 2
Burkholderia_glumae_BGR1 1 1
Alicycliphilus_denitrificans_K601 1 1
Variovorax_paradoxus_S110 2 2
Acidovorax_sp._JS42 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans_A8 1 1
Nitrosomonas_sp._Is79A3 1 1
Asticcacaulis_excentricus_CB_48 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 3 3
Caulobacter_crescentus_NA1000 1 1
Caulobacter_segnis_ATCC_21756 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Sphingobium_japonicum_UT26S 1 1
Sphingobium_chlorophenolicum_L-1 1 1
Hirschia_baltica_ATCC_49814 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Azospirillum_lipoferum_4B 1 1
Rickettsia_bellii_OSU_85-389 1 1
Rickettsia_typhi_str._Wilmington 1 1
Rickettsia_philipii_str._364D 1 1
Rickettsia_parkeri_str._Portsmouth 1 1
Rickettsia_africae_ESF-5 1 1
Rickettsia_australis_str._Cutlack 1 1
Rickettsia_conorii_str._Malish_7 1 1
Brucella_melitensis_ATCC_23457 1 1
Teredinibacter_turnerae_T7901 1 1
Shewanella_woodyi_ATCC_51908 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
gamma_proteobacterium_HdN1 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Thermoplasma_acidophilum_DSM_1728 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   31 31
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   28 28
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10 10
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   11 11
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 2 2
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 2 2
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 2 2
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 3 3
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 2 2
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 5 5
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   33 33
Hordeum_vulgare_22   (Domesticated barley)   53 53
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   44 44
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 7 7
Plasmodium_falciparum_HB3_ 4 4
Plasmodium_falciparum_Dd2_ 3 3
Chamaesiphon_minutus_PCC_6605 1 1
Cyanothece_sp._PCC_7425 1 1
Rhodococcus_erythropolis_CCM2595 2 2
Mycobacterium_sp._JDM601 1 1
Mycobacterium_canettii_CIPT_140070010 1 1
Paenibacillus_polymyxa_CR1 1 1
Alicycliphilus_denitrificans_BC 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Caulobacter_crescentus_CB15 1 1
Rickettsia_bellii_RML369-C 1 1
Rickettsia_typhi_str._B9991CWPP 1 1
Rickettsia_typhi_str._TH1527 1 1
Rickettsia_prowazekii_str._NMRC_Madrid_E 1 1
Rickettsia_prowazekii_str._Madrid_E 1 1
Rickettsia_rickettsii__str._Hlp#2 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   34 34
Pan_troglodytes_69_2.1.4   (Chimpanzee)   20 20
Gorilla_gorilla_69_3.1   (Western gorilla)   20 20
Pongo_abelii_69_2   (Sumatran orangutan)   22 22
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   26 24
Macaca_mulatta_69_1   (Rhesus monkey)   23 23
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   23 23
Otolemur_garnettii_69_3   (Small-eared galago)   23 23
Microcebus_murinus_69_1   (Gray mouse lemur)   18 17
Rattus_norvegicus_69_3.4   (Norway rat)   24 24
Mus_musculus_69_38   (House mouse)   32 32
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   18 17
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   20 20
Cavia_porcellus_69_3   (Domestic guinea pig)   17 17
Oryctolagus_cuniculus_69_2   (Rabbit)   21 21
Ochotona_princeps_69   (American pika)   24 22
Tupaia_belangeri_69   (Northern tree shrew)   14 12
Sus_scrofa_69_10.2   (Pig)   24 24
Bos_taurus_69_3.1   (Cattle)   30 30
Vicugna_pacos_69_1   (Alpaca)   13 12
Tursiops_truncatus_69_1   (Bottlenose dolphin)   23 21
Mustela_putorius_furo_69_1.0   (Domestic ferret)   27 27
Ailuropoda_melanoleuca_69_1   (Giant panda)   19 19
Canis_familiaris_69_3.1   (Dog)   29 29
Felis_catus_69   (Domestic cat)   19 17
Equus_caballus_69_2   (Horse)   22 22
Myotis_lucifugus_69_2.0   (Little brown bat)   20 20
Pteropus_vampyrus_69_1   (Large flying fox)   25 25
Sorex_araneus_69_1   (European shrew)   15 14
Erinaceus_europaeus_69   (Western European hedgehog)   27 19
Procavia_capensis_69_1   (Cape rock hyrax)   19 17
Loxodonta_africana_69_3   (African savanna elephant)   18 18
Echinops_telfairi_69   (Small Madagascar hedgehog)   17 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   22 18
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   14 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   25 20
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 24
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   30 30
Ornithorhynchus_anatinus_69_5   (Platypus)   25 24
Petromyzon_marinus_69_7.0   (Sea lamprey)   16 16
Meleagris_gallopavo_69_2   (Turkey)   17 17
Gallus_gallus_69_2   (Chicken)   19 19
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   18 17
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   18 18
Anolis_carolinensis_69_2.0   (Green anole)   29 29
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   15 15
Latimeria_chalumnae_69_1   (Coelacanth)   21 21
Gadus_morhua_69_1   (Atlantic cod)   25 25
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   29 28
Takifugu_rubripes_69_4   (Torafugu)   25 25
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   23 23
Oryzias_latipes_69_1   (Japanese medaka)   24 24
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   29 29
Oreochromis_niloticus_69_1.0   (Nile tilapia)   28 28
Danio_rerio_69_9   (Zebrafish)   32 32
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8 7
Ciona_intestinalis_69   (Vase tunicate)   12 12
Drosophila_melanogaster_69_5   (Fruit fly)   7 7
Caenorhabditis_elegans_69_215   (Roundworm)   10 10
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   34 32

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   116 116
Homo_sapiens__(NCBI_version)   (Human)   41 41
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   30 30
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   11 11
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   12 12
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   13 13
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 31 31
Malus_x_domestica_(Duplicate)   (Apple)   55 55
Ricinus_communis__(Early_assembly)   (Castor bean)   27 27
Nicotiana_benthamiana_0.4.4_(Early_draft) 50 47
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   30 30
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   29 29
Phoenix_dactylifera__(Early_draft)   (Date palm)   23 22
Protein_Data_Bank_(all_PDB_sequenc) 29 29
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 35 35
TargetDB__(Targets) 35 35
Protozoadb_2010_08_(Protozoadb) 179 179
PDB_chains_(SCOP_1.75)_(PDB) 5 5
UniProt__viral_sequences_(Viral) 24 24
STRING_v9.0.5_(STRING) 1580 1552
NCBI_viral_sequences_(Viral) 24 24
Uniprot_2018_03_genome 18623 18427
NCBI_2017_08_genome 21136 21014

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