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Domain combinations for Putative isomerase YbhE superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Putative isomerase YbhE domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   18 18
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_76_3.1   (Western gorilla)   2 2
Pongo_abelii_76_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 5
Papio_anubis_76   (Olive baboon)   2 2
Macaca_mulatta_76_1   (Rhesus monkey)   2 2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_76_3   (Small-eared galago)   2 2
Microcebus_murinus_76_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   2 2
Mus_musculus_76_38   (House mouse)   5 5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3 3
Cavia_porcellus_76_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_76_2   (Rabbit)   3 3
Ochotona_princeps_76   (American pika)   2 2
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   3 3
Bos_taurus_76_3.1   (Cattle)   6 6
Ovis_aries_76_3.1   (Sheep)   2 2
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   1 1
Canis_familiaris_76_3.1   (Dog)   7 7
Felis_catus_76_6.2   (Domestic cat)   4 4
Equus_caballus_76_2   (Horse)   5 5
Myotis_lucifugus_76_2.0   (Little brown bat)   5 5
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   4 4
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   3 3
Echinops_telfairi_76   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 3 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_76_2   (Turkey)   7 7
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4 4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   5 5
Xenopus_laevis_   (African clawed frog)   5 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_76_1   (Coelacanth)   5 5
Lepisosteus_oculatus_76   (Spotted gar)   7 7
Gadus_morhua_76_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_76_4   (Torafugu)   10 10
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   10 10
Oryzias_latipes_76_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 3
Poecilia_formosa_76   (Amazon molly)   6 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   9 9
Danio_rerio_76_9   (Zebrafish)   5 5
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7 7
Adineta_vaga 12 12
Crassostrea_gigas_22   (Pacific oyster)   7 7
Lottia_gigantea_   (Owl limpet)   4 4
Helobdella_robusta_ 8 8
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 4
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4 4
Lucilia_cuprina   (Australian sheep blowfly)   4 4
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   4 4
Drosophila_erecta_1.3 4 4
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   7 7
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   6 6
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   4 4
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 2 2
Pristionchus_pacificus_ 3 3
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 4
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 3 3
Mnemiopsis_leidyi   (Sea walnut)   3 3
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 5
Hydra_vulgaris 1 1
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 5 5
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Phycomyces_blakesleeanus_ 4 4
Mucor_circinelloides_ 2 2
Rhizomucor_miehei_CAU432_ 1 1
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 2 2
Mixia_osmundae_IAM_14324_v1.0 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4 4
Rhodotorula_graminis_WP1_v1.0 3 3
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 5 4
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 6 6
Piloderma_croceum_F_1598_v1.0 2 2
Coniophora_puteana 6 6
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 18 18
Pisolithus_tinctorius_Marx_270_v1.0 9 9
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 5 5
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 5 5
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 3 3
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 2 2
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 4 4
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 2 2
Trichoderma_virens_Gv29-8_ 5 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 4 4
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 2 2
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 2 2
Stagonospora_nodorum_ 4 4
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 5 5
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 2 2
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 3 3
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 1 1
Candida_dubliniensis_CD36_ 2 2
Candida_tropicalis_MYA-3404_ 3 3
Candida_albicans_SC5314 3 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 2 2
Wickerhamomyces_anomalus 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 3 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4 4
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   5 5
Catenaria_anguillulae_PL171_v1.0 6 6
Allomyces_macrogynus_ATCC_38327_ 5 5
Spizellomyces_punctatus_DAOM_BR117_ 4 4
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 2 2
Selaginella_moellendorffii_ 5 5
Pinus_taeda   (Loblolly pine)   3 3
Eucalyptus_grandis_v201   (Rose gum)   4 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6 6
Gossypium_raimondii_v221 6 6
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   2 2
Thellungiella_halophila_v173 6 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   9 9
Capsella_rubella_v183 8 8
Arabidopsis_lyrata_   (Lyrate rockcress)   6 6
Arabidopsis_thaliana_10   (Thale cress)   10 10
Carica_papaya_   (Papaya)   4 4
Medicago_truncatula_   (Barrel medic)   8 8
Phaseolus_vulgaris_v186   (French bean)   5 5
Glycine_max_v109   (Soybean)   8 8
Cucumis_sativus_v122   (Cucumber)   6 6
Fragaria_vesca_   (Wild strawberry)   4 4
Malus_domestica_v196   (Apple)   8 8
Prunus_persica_v139   (Peach)   5 5
Linum_usitatissimum_v200   (Flax)   6 6
Manihot_esculenta_v147   (Cassava)   6 6
Populus_trichocarpa_v156   (Black cottonwood)   6 6
Vitis_vinifera_   (Wine grape)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   4 4
Solanum_lycopersicum_v.2.3   (Tomato)   5 5
Solanum_tuberosum_   (Potato)   7 7
Actinidia_chinensis_Hongyang_ 7 7
Aquilegia_coerulea_v195 7 7
Triticum_urartu_22 3 3
Triticum_aestivum_22   (Bread wheat)   8 8
Aegilops_tauschii_22 3 3
Brachypodium_distachyon_   (Stiff brome)   7 7
Oryza_barthii_22   (African wild rice)   9 9
Oryza_meridionalis_22 10 10
Oryza_glumaepatula_22 14 14
Oryza_glaberrima   (African rice)   7 7
Oryza_punctata_22 9 9
Oryza_nivara_22 8 8
Oryza_brachyantha_22   (Malo sina)   4 4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   9 9
Oryza_sativa_v193   (Rice)   9 9
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   5 5
Panicum_virgatum_v202   (Switchgrass)   8 8
Setaria_italica_v164   (Foxtail millet)   13 13
Zea_mays_subsp._mays_   (Maize)   11 11
Zea_mays_v181   (Maize)   11 11
Sorghum_bicolor_   (Sorghum)   9 9
Musa_balbisiana   (Balbis banana)   3 3
Musa_acuminata_22   (Wild Malaysian banana)   6 6
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 3 3
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 5 5
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Thecamonas_trahens_ATCC_50062_ 7 7
Bigelowiella_natans_CCMP2755_22 2 2
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 7 7
Leishmania_mexicana_2.4 3 3
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 3 3
Trypanosoma_vivax_ 3 3
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 2 2
Aureococcus_anophagefferens_ 4 4
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 5 5
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 3 3
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 3 3
Pythium_vexans_DAOM_BR484_22 3 3
Phytophthora_sojae_1.1 4 3
Phytophthora_infestans_T30-4_ 3 3
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 2 2
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 14 13
Tetrahymena_thermophila_SB210_1_ 113 90
Ichthyophthirius_multifiliis_strain_G5_ 3 3
Cryptosporidium_hominis 1 1
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 3 3
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Theileria_parva__ 2 2
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 6 6
Naegleria_gruberi_ 11 11
Trichomonas_vaginalis_ 5 5
Guillardia_theta_CCMP2712_v1.0_ 3 3
Emiliania_huxleyi_CCMP1516_ 8 8
Acaryochloris_marina_MBIC11017 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 1 1
Microcystis_aeruginosa_NIES-843 1 1
Calothrix_sp._PCC_7507 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Frankia_alni_ACN14a 2 2
Streptosporangium_roseum_DSM_43021 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 1 1
Salinispora_arenicola_CNS-205 1 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Clostridium_saccharolyticum_WM1 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Bacillus_pseudofirmus_OF4 1 1
Saprospira_grandis_str._Lewin 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 2 2
Cyclobacterium_marinum_DSM_745 1 1
Marivirga_tractuosa_DSM_4126 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Runella_slithyformis_DSM_19594 1 1
Odoribacter_splanchnicus_DSM_20712 1 1
Pedobacter_heparinus_DSM_2366 1 1
Gramella_forsetii_KT0803 1 1
Maribacter_sp._HTCC2170 1 1
Croceibacter_atlanticus_HTCC2559 1 1
Zobellia_galactanivorans 2 2
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Rhodopirellula_baltica_SH_1 1 1
Opitutus_terrae_PB90-1 1 1
Sphaerochaeta_globus_str._Buddy 1 1
Deferribacter_desulfuricans_SSM1 1 1
Marinitoga_piezophila_KA3 5 5
Mesotoga_prima_MesG1.Ag.4.2 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Terriglobus_saanensis_SP1PR4 1 1
Leptospirillum_ferrooxidans_C2-3 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
Helicobacter_mustelae_12198 1 1
Desulfurivibrio_alkaliphilus_AHT2 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfococcus_oleovorans_Hxd3 1 1
Geobacter_sulfurreducens_KN400 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Babela_massiliensis 1 1
Haliangium_ochraceum_DSM_14365 1 1
Stigmatella_aurantiaca_DW4/3-1 2 2
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Thauera_sp._MZ1T 1 1
Burkholderia_sp._RPE64 1 1
Herminiimonas_arsenicoxydans 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 1 1
Agrobacterium_radiobacter_K84 1 1
Aggregatibacter_aphrophilus_NJ8700 1 1
Oceanimonas_sp._GK1 1 1
Aeromonas_veronii_B565 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Pseudoalteromonas_sp._SM9913 1 1
Marinomonas_posidonica_IVIA-Po-181 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Methylomicrobium_alcaliphilum 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Photorhabdus_asymbiotica 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 1 1
Erwinia_billingiae_Eb661 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_protegens_Pf-5 1 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1
Cenarchaeum_symbiosum_A 3 2
Sulfolobus_acidocaldarius_DSM_639 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7 7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 2 2
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 4 4
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 1 1
Candida_albicans_WO-1_ 4 4
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_YJM269 3 3
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 5 5
Batrachochytrium_dendrobatidis_JEL423_ 5 5
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6 6
Hordeum_vulgare_22   (Domesticated barley)   6 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 3
Trypanosoma_brucei_Lister_427_v4.1 2 2
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 3 3
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Chamaesiphon_minutus_PCC_6605 1 1
Prochlorococcus_marinus_str._NATL1A 1 1
Prochlorococcus_marinus_str._NATL2A 1 1
Oscillatoria_acuminata_PCC_6304 2 2
Arthrospira_platensis_NIES-39 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Anabaena_cylindrica_PCC_7122 1 1
Frankia_sp._CcI3 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Saccharothrix_espanaensis_DSM_44229 2 2
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 2 2
Actinoplanes_friuliensis_DSM_7358 2 2
Nocardia_brasiliensis_ATCC_700358 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Clostridium_sp._SY8519 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Alistipes_shahii_WAL_8301 1 1
Psychroflexus_torquis_ATCC_700755 2 2
Treponema_pedis_str._T_A4 1 1
Thermotoga_maritima_MSB8 1 1
Sorangium_cellulosum_So0157-2 2 2
Myxococcus_stipitatus_DSM_14675 4 4
Burkholderia_lata 1 1
Burkholderia_cenocepacia_J2315 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Thioflavicoccus_mobilis_8321 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Buchnera_aphidicola_str._Ak_(Acyrthosiphon_kondoi) 1 1
Buchnera_aphidicola_str._LL01_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._TLW03_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._JF99_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._JF98_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._Tuc7_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._5A_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum) 1 1
Buchnera_aphidicola_str._Sg_(Schizaphis_graminum) 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_protegens_CHA0 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanosarcina_mazei_Tuc01 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   6 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_69_3.1   (Western gorilla)   2 2
Pongo_abelii_69_2   (Sumatran orangutan)   4 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5 5
Macaca_mulatta_69_1   (Rhesus monkey)   1 1
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_69_3   (Small-eared galago)   2 2
Microcebus_murinus_69_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_69_3.4   (Norway rat)   2 2
Mus_musculus_69_38   (House mouse)   3 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_69_2   (Rabbit)   3 3
Ochotona_princeps_69   (American pika)   2 2
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   3 3
Bos_taurus_69_3.1   (Cattle)   6 6
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   1 1
Canis_familiaris_69_3.1   (Dog)   5 5
Felis_catus_69   (Domestic cat)   5 4
Equus_caballus_69_2   (Horse)   5 5
Myotis_lucifugus_69_2.0   (Little brown bat)   4 4
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   4 4
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   3 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   4 4
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   6 6
Gallus_gallus_69_2   (Chicken)   3 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   4 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_69_1   (Coelacanth)   4 4
Gadus_morhua_69_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_69_4   (Torafugu)   4 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7 7
Oryzias_latipes_69_1   (Japanese medaka)   6 6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   3 3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   1 1
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   6 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   16 16
Homo_sapiens__(NCBI_version)   (Human)   9 9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 3
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 2 2
Lotus_japonicus__(Early_assembly) 4 4
Malus_x_domestica_(Duplicate)   (Apple)   8 8
Ricinus_communis__(Early_assembly)   (Castor bean)   3 3
Nicotiana_benthamiana_0.4.4_(Early_draft) 7 7
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   5 5
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   5 5
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 2
NCBI_plasmid_sequences_(Plasmids) 8 8
STRING_v9.0.5_(STRING) 478 453
NCBI_2017_08_genome 5910 5851
Uniprot_2018_03_genome 6576 6503
TargetDB__(Targets) 16 16
Protozoadb_2010_08_(Protozoadb) 51 51

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