SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Mitochondrial carrier superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Mitochondrial carrier domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   222 220
Pan_troglodytes_76_2.1.4   (Chimpanzee)   53 53
Gorilla_gorilla_76_3.1   (Western gorilla)   67 67
Pongo_abelii_76_2   (Sumatran orangutan)   59 58
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   54 54
Papio_anubis_76   (Olive baboon)   63 62
Macaca_mulatta_76_1   (Rhesus monkey)   95 93
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   110 109
Otolemur_garnettii_76_3   (Small-eared galago)   59 59
Microcebus_murinus_76_1   (Gray mouse lemur)   63 53
Rattus_norvegicus_76_5.0   (Norway rat)   68 67
Mus_musculus_76_38   (House mouse)   129 129
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   58 49
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   57 57
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   66 65
Cavia_porcellus_76_3   (Domestic guinea pig)   51 51
Oryctolagus_cuniculus_76_2   (Rabbit)   56 55
Ochotona_princeps_76   (American pika)   50 45
Tupaia_belangeri_76   (Northern tree shrew)   52 43
Sus_scrofa_76_10.2   (Pig)   66 66
Bos_taurus_76_3.1   (Cattle)   62 62
Ovis_aries_76_3.1   (Sheep)   62 61
Vicugna_pacos_76_1   (Alpaca)   43 37
Tursiops_truncatus_76_1   (Bottlenose dolphin)   52 49
Mustela_putorius_furo_76_1.0   (Domestic ferret)   51 51
Ailuropoda_melanoleuca_76_1   (Giant panda)   58 58
Canis_familiaris_76_3.1   (Dog)   69 69
Felis_catus_76_6.2   (Domestic cat)   61 60
Equus_caballus_76_2   (Horse)   53 53
Myotis_lucifugus_76_2.0   (Little brown bat)   56 56
Pteropus_vampyrus_76_1   (Large flying fox)   52 50
Sorex_araneus_76_1   (European shrew)   42 39
Erinaceus_europaeus_76   (Western European hedgehog)   57 45
Procavia_capensis_76_1   (Cape rock hyrax)   54 46
Loxodonta_africana_76_3   (African savanna elephant)   73 72
Echinops_telfairi_76   (Small Madagascar hedgehog)   63 57
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   81 76
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   33 29
Macropus_eugenii_76_1.0   (Tammar wallaby)   53 50
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   58 58
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   61 61
Ornithorhynchus_anatinus_76_5   (Platypus)   51 51
Saccoglossus_kowalevskii_v3.0 77 75
Petromyzon_marinus_76_7.0   (Sea lamprey)   28 27
Meleagris_gallopavo_76_2   (Turkey)   42 42
Gallus_gallus_76_4   (Chicken)   40 40
Anas_platyrhynchos_76_1.0   (Mallard)   38 38
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   52 52
Ficedula_albicollis_76_1.0   (Collared flycatcher)   45 44
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   54 54
Anolis_carolinensis_76_2.0   (Green anole)   51 51
Xenopus_laevis_   (African clawed frog)   110 110
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   57 57
Latimeria_chalumnae_76_1   (Coelacanth)   66 66
Lepisosteus_oculatus_76   (Spotted gar)   59 59
Gadus_morhua_76_1   (Atlantic cod)   68 67
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   67 66
Takifugu_rubripes_76_4   (Torafugu)   136 136
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   87 87
Oryzias_latipes_76_1   (Japanese medaka)   96 95
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   65 65
Poecilia_formosa_76   (Amazon molly)   72 71
Oreochromis_niloticus_76_1.0   (Nile tilapia)   78 78
Astyanax_mexicanus_76   (Mexican tetra)   66 66
Danio_rerio_76_9   (Zebrafish)   98 98
Oikopleura_dioica 39 39
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   45 45
Ciona_intestinalis_76   (Vase tunicate)   31 31
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   55 54
Adineta_vaga 123 122
Octopus_bimaculoides_280 47 47
Crassostrea_gigas_22   (Pacific oyster)   39 38
Lottia_gigantea_   (Owl limpet)   37 36
Helobdella_robusta_ 34 33
Capitella_sp._I_ 44 44
Danaus_plexippus_OGS1.0   (Monarch butterfly)   41 41
Heliconius_melpomene_   (Postman butterfly)   36 35
Bombyx_mori_   (Domestic silkworm)   38 38
Nasonia_vitripennis_   (Jewel wasp)   32 32
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   122 122
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   34 33
Linepithema_humile_v1.1   (Argentine ant)   33 33
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   37 37
Solenopsis_invicta_v.2.2.3   (Red fire ant)   29 29
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   33 33
Atta_cephalotes_v1.1 41 40
Camponotus_floridanus_v3.3   (Florida carpenter ant)   37 37
Lucilia_cuprina   (Australian sheep blowfly)   37 33
Drosophila_grimshawi_1.3 47 46
Drosophila_willistoni_1.3 45 45
Drosophila_pseudoobscura_2.13 51 50
Drosophila_persimilis_1.3 62 61
Drosophila_suzukii 67 51
Drosophila_yakuba_1.3 53 52
Drosophila_simulans_1.3 48 47
Drosophila_sechellia_1.3 53 52
Drosophila_melanogaster_76_5   (Fruit fly)   101 101
Drosophila_erecta_1.3 50 49
Drosophila_ananassae_1.3 54 53
Drosophila_virilis_1.2 47 46
Drosophila_mojavensis_1.3 44 43
Megaselia_scalaris_22 20 20
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   46 46
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   49 49
Anopheles_darlingi_22   (American malaria mosquito)   30 29
Anopheles_gambiae_49_3j   (African malaria mosquito)   36 36
Tribolium_castaneum_3.0   (Red flour beetle)   38 38
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   41 40
Acyrthosiphon_pisum_   (Pea aphid)   35 34
Rhodnius_prolixus_22 37 37
Daphnia_pulex_   (Common water flea)   35 35
Strigamia_maritima_22 37 36
Sarcoptes_scabiei 32 32
Tetranychus_urticae_   (Two-spotted spider mite)   40 40
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   36 36
Pristionchus_pacificus_ 37 36
Meloidogyne_incognita_   (Southern root-knot nematode)   43 40
Meloidogyne_hapla_ 27 26
Onchocerca_volvulus_22 25 25
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   34 34
Caenorhabditis_japonica_ 37 37
Caenorhabditis_brenneri_ 53 53
Caenorhabditis_remanei_ 45 44
Caenorhabditis_elegans_76_235   (Roundworm)   108 108
Caenorhabditis_briggsae_2 38 37
Trichinella_spiralis_22 24 24
Hymenolepis_microstoma_ 28 26
Echinococcus_multilocularis_ 28 27
Echinococcus_granulosus_ 26 26
Taenia_solium_   (Pork tapeworm)   28 27
Schistosoma_mansoni_ 30 30
Mnemiopsis_leidyi   (Sea walnut)   36 36
Thelohanellus_kitauei 12 12
Acropora_digitifera_v1.0 38 38
Nematostella_vectensis_1.0   (Starlet sea anemone)   56 56
Hydra_vulgaris 37 37
Amphimedon_queenslandica 43 43
Trichoplax_adhaerens_ 34 33
Proterospongia_sp._ATCC_50818_ 40 39
Monosiga_brevicollis_ 38 38
Sphaeroforma_arctica_JP610_ 57 55
Capsaspora_owczarzaki_ATCC_30864_ 43 41
Conidiobolus_coronatus_NRRL28638_v1.0 35 35
Mortierella_verticillata_NRRL_6337_ 65 64
Phycomyces_blakesleeanus_ 54 53
Rhizopus_oryzae_RA_99-880_ 65 65
Mucor_circinelloides_ 61 61
Rhizomucor_miehei_CAU432_ 49 48
Malassezia_globosa_CBS_7966_ 68 66
Sporisorium_reilianum_22 38 38
Ustilago_maydis_ 41 39
Mixia_osmundae_IAM_14324_v1.0 35 35
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 33 33
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 36 36
Melampsora_laricis-populina_ 35 35
Rhodotorula_graminis_WP1_v1.0 36 36
Sporobolomyces_roseus_IAM_13481_ 37 37
Microbotryum_violaceum_22 42 41
Wallemia_sebi_v1.0 32 31
Sphaerobolus_stellatus_v1.0 46 45
Piloderma_croceum_F_1598_v1.0 44 43
Serpula_lacrymans_var._lacrymans_S7.9_ 39 38
Coniophora_puteana 45 42
Hydnomerulius_pinastri_v2.0 41 40
Paxillus_rubicundulus_Ve08.2h10_v1.0 37 36
Pisolithus_microcarpus_441_v1.0 38 38
Pisolithus_tinctorius_Marx_270_v1.0 38 37
Scleroderma_citrinum_Foug_A_v1.0 40 39
Coprinopsis_cinerea_okayama7_130_v3 39 38
Pleurotus_ostreatus_   (Oyster mushroom)   37 36
Amanita_thiersii_Skay4041_v1.0 40 38
Amanita_muscaria_Koide_v1.0   (Fly agaric)   39 38
Galerina_marginata_v1.0 44 43
Hebeloma_cylindrosporum_h7_v2.0 42 40
Laccaria_bicolor_S238N-H82_ 42 42
Agaricus_bisporus_var._bisporus_ 36 35
Schizophyllum_commune_ 36 36
Stereum_hirsutum_FP-91666_SS1__v1.0 38 38
Heterobasidion_annosum_ 37 37
Gloeophyllum_trabeumv1.0 40 39
Punctularia_strigosozonata_v1.0 40 39
Sebacina_vermifera_MAFF_305830_v1.0 41 41
Fomitiporia_mediterranea_v1.0 36 36
Tulasnella_calospora_AL13/4D_v1.0 42 41
Postia_placenta_ 65 63
Wolfiporia_cocos_MD-104_SS10__v1.0 42 41
Fomitopsis_pinicolav1.0 40 39
Fomitopsis_pinicola_FP-58527_SS1_v3.0 40 39
Phanerochaete_chrysosporium_RP-78_2.1 36 36
Dichomitus_squalens 40 38
Trametes_versicolor_v1.0 38 37
Tremella_mesenterica_   (Witches' butter)   35 35
Daldinia_eschscholzii_EC12_v1.0 39 38
Apiospora_montagnei_NRRL_25634_v1.0 40 40
Magnaporthe_poae_ATCC_64411_22 34 33
Magnaporthe_grisea_70-15_ 39 39
Podospora_anserina_ 37 37
Sporotrichum_thermophile_ATCC_42464_ 34 34
Thielavia_terrestris_NRRL_8126_ 34 34
Chaetomium_globosum_CBS_148.51_ 36 36
Neurospora_tetrasperma_ 36 36
Neurospora_discreta_FGSC_8579_ 38 38
Neurospora_crassa_OR74A_ 38 38
Cryphonectria_parasitica_   (Chestnut blight fungus)   38 38
Verticillium_albo-atrum_VaMs.102_ 36 36
Verticillium_dahliae_VdLs.17_ 39 39
Acremonium_alcalophilumv_1.0 35 35
Glomerella_graminicola_22 42 42
Fusarium_graminearum_ 42 42
Nectria_haematococca_mpVI_ 50 50
Fusarium_oxysporum_f._sp._lycopersici_4286_ 44 44
Fusarium_verticillioides_7600_ 42 42
Trichoderma_asperellum_CBS_433.97_v1.0 39 39
Trichoderma_atroviride_ 38 38
Trichoderma_citrinoviride_v1.0 36 36
Trichoderma_reesei_1.2 37 37
Trichoderma_virens_Gv29-8_ 39 39
Trichoderma_longibrachiatum_ATCC_18648_v1.0 36 36
Trichoderma_harzianum_CBS_226.95_v1.0 41 41
Amorphotheca_resinae_v1.0   (Creosote fungus)   38 38
Botrytis_cinerea_B05.10_ 36 36
Sclerotinia_sclerotiorum_ 37 37
Blumeria_graminis_22 33 33
Didymella_exigua_CBS_183.55_v1.0 40 40
Leptosphaeria_maculans_22 42 40
Setosphaeria_turcica_v1.0 40 40
Cochliobolus_miyabeanus_ATCC_44560_v1.0 42 42
Cochliobolus_victoriae_FI3_v1.0 44 44
Cochliobolus_carbonum_26-R-13_v1.0 45 45
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   40 40
Alternaria_brassicicola_ 39 38
Cochliobolus_lunatus_m118_v2.0 40 40
Pyrenophora_teres_f._teres_22 41 41
Pyrenophora_tritici-repentis_ 41 41
Stagonospora_nodorum_ 44 44
Mycosphaerella_graminicola_IPO323_ 41 41
Zasmidium_cellare_ATCC_36951_v1.0 44 44
Dothistroma_septosporum 39 39
Septoria_musiva_v1.0 40 39
Mycosphaerella_fijiensis_CIRAD86_ 36 36
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 42 42
Paracoccidioides_brasiliensis_Pb18_ 36 36
Coccidioides_posadasii_RMSCC_3488_ 36 35
Coccidioides_immitis_RS_ 36 36
Ajellomyces_dermatitidis_SLH14081_ 35 35
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 34 34
Microsporum_canis_CBS_113480_ 37 37
Trichophyton_equinum_CBS_127.97_ 34 34
Trichophyton_verrucosum_HKI_0517_ 31 31
Arthroderma_benhamiae_CBS_112371_ 30 30
Trichophyton_tonsurans_CBS_112818_ 36 36
Trichophyton_rubrum_CBS_118892_ 35 35
Uncinocarpus_reesii_1704_ 37 36
Aspergillus_zonatus_v1.0 38 38
Penicillium_chrysogenum_Wisconsin_54-1255_ 41 41
Penicillium_chrysogenum_v1.0 43 43
Aspergillus_acidus_v1.0 42 42
Aspergillus_fumigatus_Af293 41 40
Aspergillus_brasiliensis_v1.0 40 40
Aspergillus_nidulans_FGSC_A4_ 39 39
Aspergillus_sydowii_v1.0 46 46
Aspergillus_versicolor_v1.0 47 47
Aspergillus_glaucus 42 41
Aspergillus_carbonarius_ITEM_5010_ 41 41
Neosartorya_fischeri_NRRL_181_ 40 39
Aspergillus_terreus_NIH2624_ 43 43
Aspergillus_tubingensis_v1.0 40 40
Aspergillus_wentii_v1.0 45 45
Aspergillus_oryzae_RIB40_ 44 44
Aspergillus_niger_22 39 39
Aspergillus_niger_ATCC_1015_ 25 25
Aspergillus_flavus_NRRL3357_ 44 44
Aspergillus_clavatus_NRRL_1_ 39 38
Penicillium_marneffei_ATCC_18224_ 44 44
Tuber_melanosporum_Mel28_22 35 35
Tuber_melanosporum_Vittad_   (Perigord truffle)   36 36
Hansenula_polymorpha_v2.0 32 32
Dekkera_bruxellensis_CBS_2499_v2.0 32 32
Pichia_membranifaciensv1.0 31 31
Candida_tanzawaensis_NRRL_Y-17324__v1.0 34 34
Candida_dubliniensis_CD36_ 34 34
Candida_tropicalis_MYA-3404_ 34 34
Candida_parapsilosis_ 33 33
Candida_albicans_SC5314 34 34
Lodderomyces_elongisporus_NRRL_YB-4239_ 35 34
Babjeviella_inositovora_NRRL_Y-12698_v1.0 35 35
Pichia_stipitis_CBS_6054_ 35 35
Candida_guilliermondii_ATCC_6260_ 33 33
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 34 34
Debaromyces_hansenii 36 36
Wickerhamomyces_anomalus 36 36
Pichia_pastoris_GS115_ 35 35
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 27 26
Yarrowia_lipolytica_CLIB122 39 39
Candida_lusitaniae_ATCC_42720_ 32 32
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 34 34
Vanderwaltozyma_polyspora_DSM_70294_ 35 35
Candida_glabrata_CBS138 31 31
Kluyveromyces_thermotolerans_CBS_6340 33 33
Lachancea_kluyveri_ 34 34
Kluyveromyces_waltii 33 33
Ashbya_gossypii_ATCC_10895_ 28 28
Zygosaccharomyces_rouxii_ 34 34
Saccharomyces_mikatae_MIT 35 35
Saccharomyces_paradoxus_MIT 35 35
Saccharomyces_cerevisiae_76   (Baker's yeast)   35 35
Saccharomyces_bayanus_MIT 37 37
Kluyveromyces_lactis 30 30
Schizosaccharomyces_cryophilus_OY26_22 25 25
Schizosaccharomyces_octosporus_yFS286_ 24 24
Schizosaccharomyces_japonicus_yFS275_ 26 26
Schizosaccharomyces_pombe   (Fission yeast)   25 24
Catenaria_anguillulae_PL171_v1.0 41 41
Allomyces_macrogynus_ATCC_38327_ 80 77
Spizellomyces_punctatus_DAOM_BR117_ 50 49
Dictyostelium_discoideum 37 37
Dictyostelium_purpureum_ 36 36
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 2 2
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 108 107
Pinus_taeda   (Loblolly pine)   92 87
Picea_abies   (Norway spruce)   51 48
Eucalyptus_grandis_v201   (Rose gum)   106 105
Theobroma_cacao_B97-61/B2_v1   (Cacao)   66 65
Gossypium_raimondii_v221 241 240
Citrus_clementina_v165 98 98
Citrus_sinensis_v154   (Sweet orange)   123 123
Thellungiella_halophila_v173 66 66
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   98 97
Capsella_rubella_v183 71 71
Arabidopsis_lyrata_   (Lyrate rockcress)   68 68
Arabidopsis_thaliana_10   (Thale cress)   69 69
Carica_papaya_   (Papaya)   59 59
Medicago_truncatula_   (Barrel medic)   127 126
Phaseolus_vulgaris_v186   (French bean)   88 88
Glycine_max_v109   (Soybean)   171 170
Cucumis_sativus_v122   (Cucumber)   98 98
Fragaria_vesca_   (Wild strawberry)   65 63
Malus_domestica_v196   (Apple)   174 165
Prunus_persica_v139   (Peach)   61 61
Linum_usitatissimum_v200   (Flax)   118 115
Manihot_esculenta_v147   (Cassava)   92 92
Populus_trichocarpa_v156   (Black cottonwood)   104 104
Vitis_vinifera_   (Wine grape)   61 61
Mimulus_guttatus_v140   (Spotted monkey flower)   73 73
Solanum_lycopersicum_v.2.3   (Tomato)   65 65
Solanum_tuberosum_   (Potato)   124 118
Actinidia_chinensis_Hongyang_ 116 113
Aquilegia_coerulea_v195 106 105
Triticum_urartu_22 55 54
Triticum_aestivum_22   (Bread wheat)   185 182
Aegilops_tauschii_22 54 53
Brachypodium_distachyon_   (Stiff brome)   70 69
Oryza_barthii_22   (African wild rice)   74 73
Oryza_meridionalis_22 79 79
Oryza_glumaepatula_22 94 94
Oryza_glaberrima   (African rice)   51 51
Oryza_punctata_22 86 86
Oryza_nivara_22 79 78
Oryza_brachyantha_22   (Malo sina)   63 63
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   94 94
Oryza_sativa_v193   (Rice)   92 92
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   97 91
Panicum_virgatum_v202   (Switchgrass)   142 142
Setaria_italica_v164   (Foxtail millet)   78 78
Zea_mays_subsp._mays_   (Maize)   151 151
Zea_mays_v181   (Maize)   162 162
Sorghum_bicolor_   (Sorghum)   70 68
Musa_balbisiana   (Balbis banana)   111 107
Musa_acuminata_22   (Wild Malaysian banana)   115 115
Amborella_trichopoda_22 52 52
Physcomitrella_patens 95 95
Coccomyxa_subellipsoidea_sp._C-169_v2 41 41
Asterochloris_sp._Cgr/DA1pho_v1.0 33 32
Chlorella_variabilis_sp._NC64A_ 34 33
Chlorella_vulgaris_ 42 41
Volvox_carteri_f._nagariensis_ 41 40
Volvox_carteri_v199 44 43
Chlamydomonas_reinhardtii_4.0 47 44
Ostreococcus_sp._RCC809_ 40 39
Ostreococcus_lucimarinus_CCE9901_ 43 43
Ostreococcus_tauri_ 40 39
Bathycoccus_prasinos_ 38 37
Micromonas_sp._RCC299_ 45 45
Micromonas_pusilla_CCMP1545_v3.0 45 43
Cyanidioschyzon_merolae_strain_10D_22 31 31
Cyanidioschyzon_merolae 31 31
Porphyridium_purpureum_02_2012 41 41
Thecamonas_trahens_ATCC_50062_ 48 48
Bigelowiella_natans_CCMP2755_22 82 79
Cyanophora_paradoxa_ 58 57
Leishmania_mexicana_2.4 35 34
Leishmania_major_strain_Friedlin_ 42 41
Leishmania_infantum_JPCM5_2.4 37 36
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 35 34
Trypanosoma_vivax_ 32 31
Trypanosoma_cruzi_strain_CL_Brener 31 29
Trypanosoma_congolense_2.4 37 36
Trypanosoma_brucei_gambiense_v4.1 29 28
Trypanosoma_brucei_TREU927_v4.1 31 30
Ectocarpus_siliculosus 63 60
Aureococcus_anophagefferens_ 62 62
Albugo_laibachii_22 40 40
Pythium_iwayamai_DAOM_BR242034_22 47 47
Pythium_arrhenomanes_ATCC_12531_22 48 45
Pythium_ultimum_v1.7-2 47 47
Pythium_aphanidermatum_DAOM_BR444_22 46 46
Pythium_irregulare_DAOM_BR486_22 44 43
Pythium_vexans_DAOM_BR484_22 43 43
Phytophthora_ramorum_1.1   (Sudden oak death agent)   48 48
Phytophthora_sojae_1.1 46 46
Phytophthora_infestans_T30-4_ 50 50
Phytophthora_capsici_ 52 52
Hyaloperonospora_arabidopsidis_22 44 43
Phaeodactylum_tricornutumCCAP_1055/1 63 63
Fragilariopsis_cylindrus 97 97
Thalassiosira_pseudonana_CCMP1335 59 58
Perkinsus_marinus_ATCC_50983_ 62 62
Paramecium_tetraurelia_ 102 101
Tetrahymena_thermophila_SB210_1_ 56 54
Ichthyophthirius_multifiliis_strain_G5_ 43 42
Cryptosporidium_hominis 8 8
Cryptosporidium_muris 14 13
Cryptosporidium_parvum_Iowa_II 9 9
Neospora_caninum 23 20
Toxoplasma_gondii_VEG 25 22
Toxoplasma_gondii_ME49 25 22
Toxoplasma_gondii_GT1 26 23
Babesia_bovis_T2Bo_ 18 18
Theileria_parva__ 10 10
Theileria_annulata 10 10
Plasmodium_falciparum_3D7_ 15 13
Plasmodium_vivax_SaI-1_7.0 17 15
Plasmodium_knowlesi_strain_H_ 15 13
Plasmodium_yoelii_ssp._yoelii_1_ 12 11
Plasmodium_chabaudi_ 15 13
Plasmodium_berghei_ANKA_ 14 13
Symbiodinium_minutum_clade_B1_v1.2 108 103
Naegleria_gruberi_ 55 55
Trichomonas_vaginalis_ 6 6
Guillardia_theta_CCMP2712_v1.0_ 92 91
Emiliania_huxleyi_CCMP1516_ 179 175
Pelotomaculum_thermopropionicum_SI 1 1
Candidatus_Cardinium_hertigii 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Babela_massiliensis 1 1
Neorickettsia_sennetsu_str._Miyayama 2 2
Neorickettsia_risticii_str._Illinois 2 2
Legionella_longbeachae_NSW150 3 3
Legionella_pneumophila_str._Corby 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   126 126
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   86 86
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   43 43
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   39 38
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   45 45
Cryptococcus_neoformans_var._grubii_H99_ 38 37
Cryptococcus_neoformans_B-3501A_ 38 37
Cryptococcus_neoformans_JEC21_ 32 31
Paracoccidioides_brasiliensis_Pb01_ 35 35
Paracoccidioides_brasiliensis_Pb03_ 36 36
Coccidioides_posadasii_str._Silveira_ 37 37
Coccidioides_immitis_RMSCC_3703_ 34 34
Coccidioides_immitis_RMSCC_2394_ 34 34
Coccidioides_immitis_H538.4_ 36 36
Ajellomyces_dermatitidis_ER-3_ 35 35
Histoplasma_capsulatum_H143 36 36
Histoplasma_capsulatum_H88 35 35
Histoplasma_capsulatum_G186AR 35 35
Aspergillus_fumigatus_A1163_ 39 38
Candida_albicans_WO-1_ 34 34
Saccharomyces_cerevisiae_UC5 32 32
Saccharomyces_cerevisiae_PW5 29 29
Saccharomyces_cerevisiae_FL100 23 23
Saccharomyces_cerevisiae_CLIB382 4 4
Saccharomyces_cerevisiae_CLIB324 22 22
Saccharomyces_cerevisiae_CBS7960 28 28
Saccharomyces_cerevisiae_YJM269 30 30
Saccharomyces_cerevisiae_T7 35 35
Saccharomyces_cerevisiae_FostersB 35 35
Saccharomyces_cerevisiae_FostersO 33 33
Saccharomyces_cerevisiae_VL3 35 35
Saccharomyces_cerevisiae_Vin13 34 34
Saccharomyces_cerevisiae_LalvinQA23 35 35
Saccharomyces_cerevisiae_AWRI796 34 34
Saccharomyces_cerevisiae_Sigma1278b 35 35
Saccharomyces_cerevisiae_W303 35 35
Saccharomyces_cerevisiae_JAY291 35 35
Saccharomyces_cerevisiae_AWRI1631 26 26
Saccharomyces_cerevisiae_YPS163 21 21
Saccharomyces_cerevisiae_M22 12 12
Saccharomyces_cerevisiae_T73 18 18
Saccharomyces_cerevisiae_CLIB215 31 31
Saccharomyces_cerevisiae_Y10 19 19
Saccharomyces_cerevisiae_YJM789_ 35 35
Saccharomyces_cerevisiae_YJM789 35 35
Saccharomyces_cerevisiae_RM11-1a 35 35
Saccharomyces_cerevisiae_RM11-1a_ 35 35
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   35 35
Schizosaccharomyces_pombe_972h-_ 25 24
Batrachochytrium_dendrobatidis_JEL423_ 36 36
Batrachochytrium_dendrobatidis_JAM81_ 35 35
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   67 63
Hordeum_vulgare_22   (Domesticated barley)   137 136
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   69 65
Trypanosoma_brucei_Lister_427_v4.1 31 30
Neospora_caninum_Nc-Liverpool_6.2 23 20
Plasmodium_falciparum_HB3_ 13 12
Plasmodium_falciparum_Dd2_ 9 9
Cyanothece_sp._ATCC_51142 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   57 56
Pan_troglodytes_69_2.1.4   (Chimpanzee)   51 51
Gorilla_gorilla_69_3.1   (Western gorilla)   56 56
Pongo_abelii_69_2   (Sumatran orangutan)   52 51
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   51 50
Macaca_mulatta_69_1   (Rhesus monkey)   61 60
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   63 62
Otolemur_garnettii_69_3   (Small-eared galago)   55 55
Microcebus_murinus_69_1   (Gray mouse lemur)   63 53
Rattus_norvegicus_69_3.4   (Norway rat)   63 62
Mus_musculus_69_38   (House mouse)   52 52
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   58 49
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   54 54
Cavia_porcellus_69_3   (Domestic guinea pig)   51 51
Oryctolagus_cuniculus_69_2   (Rabbit)   50 50
Ochotona_princeps_69   (American pika)   50 45
Tupaia_belangeri_69   (Northern tree shrew)   52 43
Sus_scrofa_69_10.2   (Pig)   49 49
Bos_taurus_69_3.1   (Cattle)   54 54
Vicugna_pacos_69_1   (Alpaca)   43 37
Tursiops_truncatus_69_1   (Bottlenose dolphin)   52 49
Mustela_putorius_furo_69_1.0   (Domestic ferret)   51 51
Ailuropoda_melanoleuca_69_1   (Giant panda)   52 52
Canis_familiaris_69_3.1   (Dog)   57 57
Felis_catus_69   (Domestic cat)   49 44
Equus_caballus_69_2   (Horse)   51 51
Myotis_lucifugus_69_2.0   (Little brown bat)   55 55
Pteropus_vampyrus_69_1   (Large flying fox)   52 50
Sorex_araneus_69_1   (European shrew)   42 39
Erinaceus_europaeus_69   (Western European hedgehog)   57 45
Procavia_capensis_69_1   (Cape rock hyrax)   54 46
Loxodonta_africana_69_3   (African savanna elephant)   55 54
Echinops_telfairi_69   (Small Madagascar hedgehog)   63 57
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   42 36
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   33 29
Macropus_eugenii_69_1.0   (Tammar wallaby)   53 50
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   51 51
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   61 61
Ornithorhynchus_anatinus_69_5   (Platypus)   46 46
Petromyzon_marinus_69_7.0   (Sea lamprey)   28 27
Meleagris_gallopavo_69_2   (Turkey)   41 41
Gallus_gallus_69_2   (Chicken)   39 39
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   51 51
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   50 50
Anolis_carolinensis_69_2.0   (Green anole)   48 48
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   48 48
Latimeria_chalumnae_69_1   (Coelacanth)   56 56
Gadus_morhua_69_1   (Atlantic cod)   66 65
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   61 60
Takifugu_rubripes_69_4   (Torafugu)   65 65
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   61 61
Oryzias_latipes_69_1   (Japanese medaka)   63 62
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   65 65
Oreochromis_niloticus_69_1.0   (Nile tilapia)   67 67
Danio_rerio_69_9   (Zebrafish)   68 68
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   30 30
Ciona_intestinalis_69   (Vase tunicate)   29 29
Drosophila_melanogaster_69_5   (Fruit fly)   49 49
Caenorhabditis_elegans_69_215   (Roundworm)   38 38
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   35 35
Arabidopsis_thaliana_10   (Thale cress)   59 59

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   247 246
Homo_sapiens__(NCBI_version)   (Human)   75 75
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   52 52
Heliconius_numata__(Incomplete) 23 23
Loa_loa_v3.3_(Request)   (Eye worm)   29 28
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   20 18
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   24 23
Moniliophthora_perniciosa_FA553__(Genome_survey) 44 44
Picea_sitchensis__(Incomplete)   (Sitka spruce)   10 10
Lotus_japonicus__(Early_assembly) 92 92
Malus_x_domestica_(Duplicate)   (Apple)   174 165
Ricinus_communis__(Early_assembly)   (Castor bean)   66 66
Nicotiana_benthamiana_0.4.4_(Early_draft) 162 151
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   65 65
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   65 65
Phoenix_dactylifera__(Early_draft)   (Date palm)   58 55
Protozoadb_2010_08_(Protozoadb) 533 504
STRING_v9.0.5_(STRING) 5154 5091
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 23 23
NCBI_2017_08_genome 52101 51781
Uniprot_2018_03_genome 69169 68138
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_viral_sequences_(Viral) 8 8
Core_Eukaryotic_Genes_458_(CEGMA) 18 18
UniProt__viral_sequences_(Viral) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 20 10
TargetDB__(Targets) 222 221

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