SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for TSP type-3 repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TSP type-3 repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   36 13
Pan_troglodytes_76_2.1.4   (Chimpanzee)   14 5
Gorilla_gorilla_76_3.1   (Western gorilla)   14 5
Pongo_abelii_76_2   (Sumatran orangutan)   15 5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14 5
Papio_anubis_76   (Olive baboon)   15 5
Macaca_mulatta_76_1   (Rhesus monkey)   17 6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   34 13
Otolemur_garnettii_76_3   (Small-eared galago)   15 5
Microcebus_murinus_76_1   (Gray mouse lemur)   10 4
Rattus_norvegicus_76_5.0   (Norway rat)   15 5
Mus_musculus_76_38   (House mouse)   18 7
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   15 5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15 5
Cavia_porcellus_76_3   (Domestic guinea pig)   14 5
Oryctolagus_cuniculus_76_2   (Rabbit)   12 4
Ochotona_princeps_76   (American pika)   9 5
Tupaia_belangeri_76   (Northern tree shrew)   11 4
Sus_scrofa_76_10.2   (Pig)   21 8
Bos_taurus_76_3.1   (Cattle)   15 5
Ovis_aries_76_3.1   (Sheep)   14 6
Vicugna_pacos_76_1   (Alpaca)   5 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   17 6
Canis_familiaris_76_3.1   (Dog)   18 6
Felis_catus_76_6.2   (Domestic cat)   15 5
Equus_caballus_76_2   (Horse)   15 5
Myotis_lucifugus_76_2.0   (Little brown bat)   15 5
Pteropus_vampyrus_76_1   (Large flying fox)   11 5
Sorex_araneus_76_1   (European shrew)   11 4
Erinaceus_europaeus_76   (Western European hedgehog)   11 4
Procavia_capensis_76_1   (Cape rock hyrax)   14 5
Loxodonta_africana_76_3   (African savanna elephant)   21 7
Echinops_telfairi_76   (Small Madagascar hedgehog)   11 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12 4
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   7 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   11 4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   18 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   15 5
Ornithorhynchus_anatinus_76_5   (Platypus)   8 4
Saccoglossus_kowalevskii_v3.0 14 4
Petromyzon_marinus_76_7.0   (Sea lamprey)   9 4
Meleagris_gallopavo_76_2   (Turkey)   11 4
Gallus_gallus_76_4   (Chicken)   12 4
Anas_platyrhynchos_76_1.0   (Mallard)   12 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   15 6
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   21 8
Anolis_carolinensis_76_2.0   (Green anole)   14 5
Xenopus_laevis_   (African clawed frog)   36 12
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   12 5
Latimeria_chalumnae_76_1   (Coelacanth)   15 5
Lepisosteus_oculatus_76   (Spotted gar)   20 7
Gadus_morhua_76_1   (Atlantic cod)   24 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   18 6
Takifugu_rubripes_76_4   (Torafugu)   63 21
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27 9
Oryzias_latipes_76_1   (Japanese medaka)   31 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   22 8
Poecilia_formosa_76   (Amazon molly)   27 9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   30 10
Astyanax_mexicanus_76   (Mexican tetra)   23 8
Danio_rerio_76_9   (Zebrafish)   43 15
Oikopleura_dioica 5 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   29 10
Ciona_intestinalis_76   (Vase tunicate)   11 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   17 8
Octopus_bimaculoides_280 5 2
Crassostrea_gigas_22   (Pacific oyster)   5 2
Lottia_gigantea_   (Owl limpet)   3 1
Helobdella_robusta_ 4 3
Capitella_sp._I_ 10 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 1
Heliconius_melpomene_   (Postman butterfly)   3 1
Bombyx_mori_   (Domestic silkworm)   3 1
Nasonia_vitripennis_   (Jewel wasp)   3 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 1
Linepithema_humile_v1.1   (Argentine ant)   3 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 1
Atta_cephalotes_v1.1 3 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 1
Lucilia_cuprina   (Australian sheep blowfly)   10 2
Drosophila_grimshawi_1.3 4 2
Drosophila_willistoni_1.3 4 2
Drosophila_pseudoobscura_2.13 3 1
Drosophila_persimilis_1.3 3 1
Drosophila_suzukii 4 2
Drosophila_yakuba_1.3 3 1
Drosophila_simulans_1.3 3 1
Drosophila_sechellia_1.3 3 1
Drosophila_melanogaster_76_5   (Fruit fly)   8 3
Drosophila_erecta_1.3 3 1
Drosophila_ananassae_1.3 3 1
Drosophila_virilis_1.2 4 2
Drosophila_mojavensis_1.3 3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   18 6
Anopheles_darlingi_22   (American malaria mosquito)   5 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 1
Tribolium_castaneum_3.0   (Red flour beetle)   3 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 1
Acyrthosiphon_pisum_   (Pea aphid)   3 1
Rhodnius_prolixus_22 3 1
Daphnia_pulex_   (Common water flea)   4 2
Strigamia_maritima_22 3 1
Sarcoptes_scabiei 3 1
Tetranychus_urticae_   (Two-spotted spider mite)   3 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 1
Hymenolepis_microstoma_ 8 1
Echinococcus_multilocularis_ 9 1
Echinococcus_granulosus_ 9 1
Taenia_solium_   (Pork tapeworm)   9 1
Schistosoma_mansoni_ 4 3
Mnemiopsis_leidyi   (Sea walnut)   3 2
Acropora_digitifera_v1.0 16 7
Nematostella_vectensis_1.0   (Starlet sea anemone)   13 6
Hydra_vulgaris 6 2
Amphimedon_queenslandica 2 1
Trichoplax_adhaerens_ 3 1
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Phytophthora_capsici_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 12 3
Guillardia_theta_CCMP2712_v1.0_ 7 1
Emiliania_huxleyi_CCMP1516_ 1 1
Nostoc_sp._PCC_7107 1 1
Conexibacter_woesei_DSM_14684 1 1
Blastococcus_saxobsidens_DD2 1 1
Stackebrandtia_nassauensis_DSM_44728 3 3
Frankia_sp._EAN1pec 1 1
Streptosporangium_roseum_DSM_43021 1 1
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 1 1
Propionibacterium_acnes_SK137 3 3
Microlunatus_phosphovorus_NM-1 5 2
Verrucosispora_maris_AB-18-032 2 2
Micromonospora_sp._L5 2 2
Micromonospora_aurantiaca_ATCC_27029 2 2
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 1 1
Gordonia_sp._KTR9 3 3
Gordonia_bronchialis_DSM_43247 2 2
Nocardia_cyriacigeorgica_GUH-2 1 1
Mycobacterium_abscessus_ATCC_19977 2 1
Mycobacterium_sp._JLS 1 1
Mycobacterium_intracellulare_ATCC_13950 2 1
Mycobacterium_avium_104 2 1
Mycobacterium_vanbaalenii_PYR-1 2 1
Mycobacterium_canettii_CIPT_140010059 2 1
Mycobacterium_africanum_GM041182 2 1
Mycobacterium_tuberculosis_KZN_1435 2 1
Mycobacterium_tuberculosis 2 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 2 1
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_chubuense_NBB4 2 1
Mycobacterium_marinum_M 2 1
Mycobacterium_smegmatis_str._MC2_155 2 1
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_urealyticum_DSM_7109 1 1
Corynebacterium_jeikeium_K411 3 1
Gardnerella_vaginalis_409-05 1 1
Mobiluncus_curtisii_ATCC_43063 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Herpetosiphon_aurantiacus_DSM_785 4 4
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 5 2
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 5 2
Chloroflexus_aurantiacus_J-10-fl 1 1
Meiothermus_ruber_DSM_1279 1 1
Finegoldia_magna_ATCC_29328 11 1
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridium_clariflavum_DSM_19732 1 1
Clostridium_thermocellum_ATCC_27405 2 1
Eubacterium_rectale_M104/1 2 1
Eubacterium_rectale_ATCC_33656 1 1
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_lactoaceticus_6A 3 2
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1 1
Caldicellulosiruptor_bescii_DSM_6725 3 3
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 2 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Ignavibacterium_album_JCM_16511 6 5
Haliscomenobacter_hydrossis_DSM_1100 23 6
Saprospira_grandis_str._Lewin 5 4
Niastella_koreensis_GR20-10 4 4
Chitinophaga_pinensis_DSM_2588 2 2
Belliella_baltica_DSM_15883 1 1
Cyclobacterium_marinum_DSM_745 1 1
Marivirga_tractuosa_DSM_4126 2 2
Fibrella_aestuarina 1 1
Leadbetterella_byssophila_DSM_17132 1 1
Cytophaga_hutchinsonii_ATCC_33406 2 1
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 6 2
Paludibacter_propionicigenes_WB4 4 2
Pedobacter_saltans_DSM_12145 4 4
Solitalea_canadensis_DSM_3403 2 2
Pedobacter_heparinus_DSM_2366 2 2
Sphingobacterium_sp._21 2 2
Fluviicola_taffensis_DSM_16823 2 2
Owenweeksia_hongkongensis_DSM_17368 2 2
Zunongwangia_profunda_SM-A87 2 1
Krokinobacter_sp._4H-3-7-5 5 5
Gramella_forsetii_KT0803 3 3
Lacinutrix_sp._5H-3-7-4 4 4
Maribacter_sp._HTCC2170 7 5
Robiginitalea_biformata_HTCC2501 12 7
Croceibacter_atlanticus_HTCC2559 4 4
Aequorivita_sublithincola_DSM_14238 2 2
Zobellia_galactanivorans 12 8
Muricauda_ruestringensis_DSM_13258 5 3
Cellulophaga_algicola_DSM_14237 12 6
Cellulophaga_lytica_DSM_7489 8 6
Flavobacteriaceae_bacterium_3519-10 3 3
Polaribacter_sp._MED152 5 4
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 4 4
Ornithobacterium_rhinotracheale_DSM_15997 2 2
Capnocytophaga_canimorsus_Cc5 3 2
Capnocytophaga_ochracea_DSM_7271 4 2
Weeksella_virosa_DSM_16922 3 3
Flavobacterium_indicum_GPTSA100-9 2 2
Flavobacterium_psychrophilum_JIP02/86 3 2
Flavobacterium_branchiophilum_FL-15 2 2
Flavobacterium_columnare_ATCC_49512 3 3
Flavobacterium_johnsoniae_UW101 7 4
Blattabacterium_sp._(Nauphoeta_cinerea) 1 1
Blattabacterium_sp._(Blattella_germanica)_str._Bge 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 10 4
Opitutus_terrae_PB90-1 1 1
Denitrovibrio_acetiphilus_DSM_12809 1 1
Granulicella_tundricola_MP5ACTX9 1 1
Terriglobus_roseus_DSM_18391 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Nautilia_profundicola_AmH 1 1
Sulfurospirillum_deleyianum_DSM_6946 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Arcobacter_sp._L 2 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Arcobacter_butzleri_RM4018 3 2
Campylobacter_curvus_525.92 1 1
Campylobacter_concisus_13826 1 1
Campylobacter_sp._03-427 1 1
Campylobacter_fetus_subsp._fetus_82-40 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 2 2
Sulfuricurvum_kujiense_DSM_16994 2 2
Sulfurimonas_denitrificans_DSM_1251 1 1
Wolinella_succinogenes_DSM_1740 1 1
Sulfurovum_sp._NBC37-1 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Desulfatibacillum_alkenivorans_AK-01 10 7
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 4 4
Desulfohalobium_retbaense_DSM_5692 1 1
Desulfomicrobium_baculatum_DSM_4028 2 2
Geobacter_daltonii_FRC-32 1 1
Geobacter_sp._M21 1 1
Geobacter_sulfurreducens_KN400 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_propionicus_DSM_2379 1 1
Pelobacter_carbinolicus_DSM_2380 3 3
Haliangium_ochraceum_DSM_14365 24 16
Sorangium_cellulosum_'So_ce_56' 46 27
Anaeromyxobacter_sp._Fw109-5 6 5
Anaeromyxobacter_dehalogenans_2CP-1 3 2
Stigmatella_aurantiaca_DW4/3-1 18 13
Corallococcus_coralloides_DSM_2259 14 11
Myxococcus_xanthus_DK_1622 16 13
Myxococcus_fulvus_HW-1 17 14
Neisseria_meningitidis_FAM18 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_sp._KKS102 2 2
Herminiimonas_arsenicoxydans 1 1
Thiobacillus_denitrificans_ATCC_25259 2 2
Magnetococcus_marinus_MC-1 2 1
Saccharophagus_degradans_2-40 16 6
Teredinibacter_turnerae_T7901 13 5
Cellvibrio_japonicus_Ueda107 16 3
Gallibacterium_anatis_UMN179 2 2
Oceanimonas_sp._GK1 1 1
Aliivibrio_salmonicida_LFI1238 2 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 2 2
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 2 1
Vibrio_furnissii_NCTC_11218 3 2
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Psychromonas_ingrahamii_37 4 2
Ferrimonas_balearica_DSM_9799 5 2
Shewanella_piezotolerans_WP3 3 3
Shewanella_loihica_PV-4 2 2
Shewanella_halifaxensis_HAW-EB4 2 2
Shewanella_sediminis_HAW-EB3 2 2
Shewanella_denitrificans_OS217 3 3
Shewanella_pealeana_ATCC_700345 4 4
Shewanella_oneidensis_MR-1 2 2
Shewanella_baltica_OS185 2 2
Shewanella_woodyi_ATCC_51908 5 3
Shewanella_sp._MR-4 3 3
Shewanella_amazonensis_SB2B 11 3
Shewanella_violacea_DSS12 10 8
Shewanella_frigidimarina_NCIMB_400 3 3
Shewanella_putrefaciens_CN-32 2 2
Colwellia_psychrerythraea_34H 12 4
Pseudoalteromonas_atlantica_T6c 3 3
Glaciecola_sp._4H-3-7+YE-5 2 2
Glaciecola_nitratireducens_FR1064 5 3
Marinobacter_adhaerens_HP15 1 1
Marinobacter_sp._BSs20148 2 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Alteromonas_sp._SN2 4 4
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 5 3
Alcanivorax_borkumensis_SK2 7 4
Marinomonas_mediterranea_MMB-1 2 1
Chromohalobacter_salexigens_DSM_3043 1 1
Halomonas_elongata_DSM_2581 1 1
Methylomicrobium_alcaliphilum 2 2
Methylomonas_methanica_MC09 3 3
Methylococcus_capsulatus_str._Bath 1 1
Rhodanobacter_denitrificans 1 1
Frateuria_aurantia_DSM_6220 2 2
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Xylella_fastidiosa_M23 4 4
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
gamma_proteobacterium_HdN1 3 2
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 3 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 3 3
Pseudomonas_entomophila_L48 3 3
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_putida_F1 3 3
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 3 3
Psychrobacter_sp._G 3 3
Psychrobacter_sp._PRwf-1 2 2
Psychrobacter_arcticus_273-4 1 1
Psychrobacter_cryohalolentis_K5 5 5
Moraxella_catarrhalis_RH4 1 1
Methylophaga_sp._JAM1 1 1
Cycloclasticus_sp._P1 2 2
Thiomicrospira_crunogena_XCL-2 1 1
Cenarchaeum_symbiosum_A 20 4
Candidatus_Nitrosopumilus_sp._AR2 21 5
Nitrosopumilus_maritimus_SCM1 13 4
Methanohalobium_evestigatum_Z-7303 2 1
Methanoculleus_marisnigri_JR1 1 1
Archaeoglobus_veneficus_SNP6 1 1
Thermococcus_kodakarensis_KOD1 4 2
Salinarchaeum_sp._Harcht-Bsk1 2 2
Natrinema_sp._J7-2 2 2
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 2 2
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 4 3
Halorhabdus_utahensis_DSM_12940 1 1
Haloarcula_hispanica_ATCC_33960 4 3
Haloarcula_marismortui_ATCC_43049 3 3
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Aciduliprofundum_boonei_T469 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   23 8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 1
Synechococcus_sp._PCC_7002 1 1
Cyanothece_sp._PCC_7822 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 16 2
Saccharothrix_espanaensis_DSM_44229 2 2
Propionibacterium_avidum_44067 1 1
Propionibacterium_acnes_ATCC_11828 2 2
Propionibacterium_acnes_TypeIA2_P.acn31 2 2
Propionibacterium_acnes_TypeIA2_P.acn17 3 3
Propionibacterium_acnes_TypeIA2_P.acn33 3 3
Propionibacterium_acnes_C1 3 3
Propionibacterium_acnes_6609 1 1
Propionibacterium_acnes_266 3 3
Propionibacterium_acnes_KPA171202 3 3
Propionibacterium_acidipropionici_ATCC_4875 3 3
Actinoplanes_friuliensis_DSM_7358 1 1
Mycobacterium_sp._MOTT36Y 2 1
Mycobacterium_sp._JDM601 2 1
Mycobacterium_abscessus_subsp._bolletii_50594 2 1
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Mycobacterium_yongonense_05-1390 2 1
Mycobacterium_intracellulare_MOTT-64 2 1
Mycobacterium_indicus_pranii_MTCC_9506 2 1
Mycobacterium_intracellulare_MOTT-02 2 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 2 1
Mycobacterium_canettii_CIPT_140070017 2 1
Mycobacterium_canettii_CIPT_140060008 2 1
Mycobacterium_canettii_CIPT_140070008 2 1
Mycobacterium_canettii_CIPT_140070010 2 1
Mycobacterium_tuberculosis_EAI5/NITR206 2 1
Mycobacterium_tuberculosis_EAI5 2 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 2 1
Mycobacterium_tuberculosis_UT205 2 1
Mycobacterium_tuberculosis_RGTB423 2 1
Mycobacterium_tuberculosis_RGTB327 2 1
Mycobacterium_tuberculosis_CTRI-2 2 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 2 1
Mycobacterium_tuberculosis_KZN_605 2 1
Mycobacterium_tuberculosis_KZN_4207 2 1
Mycobacterium_tuberculosis_CCDC5180 2 1
Mycobacterium_tuberculosis_CCDC5079 2 1
Mycobacterium_tuberculosis_CCDC5079 2 1
Mycobacterium_tuberculosis_H37Ra 2 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1 1
Mycobacterium_tuberculosis_str._Haarlem 2 1
Mycobacterium_tuberculosis_F11 2 1
Mycobacterium_tuberculosis_H37Rv 2 1
Mycobacterium_tuberculosis_CDC1551 2 1
Mycobacterium_bovis_AF2122/97 2 1
Mycobacterium_bovis_BCG_str._Korea_1168P 2 1
Mycobacterium_bovis_BCG_str._Mexico 2 1
Mycobacterium_bovis_BCG_str._Tokyo_172 2 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_smegmatis_str._MC2_155 2 1
Mycobacterium_kansasii_ATCC_12478 2 1
Gardnerella_vaginalis_HMP9231 1 1
Gardnerella_vaginalis_ATCC_14019 1 1
Bifidobacterium_thermophilum_RBL67 1 1
Clostridium_thermocellum_DSM_1313 2 1
Ruminococcus_champanellensis_18P13 2 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Streptococcus_agalactiae_09mas018883 3 2
Streptococcus_suis_T15 2 2
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_D12 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 2 2
Streptococcus_suis_SC84 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Exiguobacterium_antarcticum_B7 1 1
Geobacillus_sp._C56-T3 1 1
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Amphibacillus_xylanus_NBRC_15112 1 1
Echinicola_vietnamensis_DSM_17526 3 2
Emticicia_oligotrophica_DSM_17448 1 1
Nonlabens_dokdonensis_DSW-6 5 3
Psychroflexus_torquis_ATCC_700755 4 3
Riemerella_anatipestifer_RA-CH-2 4 4
Riemerella_anatipestifer_RA-CH-1 3 3
Riemerella_anatipestifer_RA-GD 4 4
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 4 4
Blattabacterium_sp._(Panesthia_angustipennis_spadica)_Blattabacterium_sp._(Panesthia_angustipennis_spadica)_str._BPAA 1 1
Blattabacterium_sp._(Blaberus_giganteus) 1 1
Blattabacterium_sp._(Blatta_orientalis)_Blattabacterium_sp._(Blatta_orientalis)_str._Tarazona 1 1
Blattabacterium_sp._(Periplaneta_americana)_str._BPLAN 1 1
Blattabacterium_sp._(Cryptocercus_punctulatus)_str._Cpu 1 1
Blattabacterium_sp._(Mastotermes_darwiniensis)_str._MADAR 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 10 4
Bdellovibrio_exovorus_JSS 1 1
Arcobacter_butzleri_7h1h 3 2
Arcobacter_butzleri_ED-1 3 2
Desulfocapsa_sulfexigens_DSM_10523 1 1
Desulfobacula_toluolica_Tol2 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2 2
Geobacter_sulfurreducens_PCA 2 2
Sorangium_cellulosum_So0157-2 47 28
Anaeromyxobacter_sp._K 3 2
Anaeromyxobacter_dehalogenans_2CP-C 3 2
Myxococcus_stipitatus_DSM_14675 13 12
Neisseria_meningitidis_M01-240355 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 10 7
Vibrio_sp._EJY3 3 2
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 2 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 2 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_sp._W3-18-1 2 2
Shewanella_sp._ANA-3 2 2
Shewanella_baltica_BA175 2 2
Shewanella_baltica_OS678 2 2
Shewanella_baltica_OS117 2 2
Shewanella_baltica_OS223 2 2
Shewanella_baltica_OS195 2 2
Shewanella_baltica_OS155 2 2
Shewanella_sp._MR-7 3 3
Shewanella_putrefaciens_200 2 2
Glaciecola_psychrophila_170 9 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 4 4
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_str._'English_Channel_615' 1 1
Alteromonas_macleodii_AltDE1 4 4
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Alcanivorax_dieselolei_B5 5 4
Thalassolituus_oleivorans_MIL-1 20 8
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 4 4
Xylella_fastidiosa_M12 3 3
Xylella_fastidiosa_Temecula1 4 4
Xylella_fastidiosa_9a5c 4 4
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_monteilii_SB3101 3 3
Pseudomonas_monteilii_SB3078 3 3
Pseudomonas_putida_H8234 3 3
Pseudomonas_putida_HB3267 3 3
Pseudomonas_putida_NBRC_14164 3 3
Pseudomonas_putida_DOT-T1E 3 3
Pseudomonas_putida_S16 3 3
Pseudomonas_putida_BIRD-1 3 3
Pseudomonas_putida_W619 3 3
Pseudomonas_putida_ND6 3 3
Pseudomonas_putida_KT2440 3 3
Pseudomonas_putida_GB-1 3 3
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_fluorescens_F113 3 3
Pseudomonas_fluorescens_R124 2 2
Pseudomonas_fluorescens_Pf0-1 3 3
Pseudomonas_resinovorans_NBRC_106553 3 3
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 2 2
Pseudomonas_aeruginosa_PA1 2 2
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Methylophaga_sp._JAM7 1 1
Cycloclasticus_zancles_7-ME 2 2
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 20 7
Methanolobus_psychrophilus_R15 4 1
Thermococcus_sp._AM4 2 2
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Halovivax_ruber_XH-70 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 5 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   15 5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   12 4
Gorilla_gorilla_69_3.1   (Western gorilla)   14 5
Pongo_abelii_69_2   (Sumatran orangutan)   12 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 5
Macaca_mulatta_69_1   (Rhesus monkey)   15 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   15 5
Otolemur_garnettii_69_3   (Small-eared galago)   15 5
Microcebus_murinus_69_1   (Gray mouse lemur)   10 4
Rattus_norvegicus_69_3.4   (Norway rat)   9 3
Mus_musculus_69_38   (House mouse)   15 5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   15 5
Cavia_porcellus_69_3   (Domestic guinea pig)   14 5
Oryctolagus_cuniculus_69_2   (Rabbit)   12 4
Ochotona_princeps_69   (American pika)   9 5
Tupaia_belangeri_69   (Northern tree shrew)   11 4
Sus_scrofa_69_10.2   (Pig)   18 7
Bos_taurus_69_3.1   (Cattle)   15 5
Vicugna_pacos_69_1   (Alpaca)   5 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   15 5
Canis_familiaris_69_3.1   (Dog)   15 5
Felis_catus_69   (Domestic cat)   11 5
Equus_caballus_69_2   (Horse)   15 5
Myotis_lucifugus_69_2.0   (Little brown bat)   15 5
Pteropus_vampyrus_69_1   (Large flying fox)   11 5
Sorex_araneus_69_1   (European shrew)   11 4
Erinaceus_europaeus_69   (Western European hedgehog)   11 4
Procavia_capensis_69_1   (Cape rock hyrax)   14 5
Loxodonta_africana_69_3   (African savanna elephant)   15 5
Echinops_telfairi_69   (Small Madagascar hedgehog)   11 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   7 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   11 4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   15 5
Ornithorhynchus_anatinus_69_5   (Platypus)   8 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   9 4
Meleagris_gallopavo_69_2   (Turkey)   11 4
Gallus_gallus_69_2   (Chicken)   12 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   15 6
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   19 7
Anolis_carolinensis_69_2.0   (Green anole)   14 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 5
Latimeria_chalumnae_69_1   (Coelacanth)   15 5
Gadus_morhua_69_1   (Atlantic cod)   24 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18 6
Takifugu_rubripes_69_4   (Torafugu)   21 7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   24 8
Oryzias_latipes_69_1   (Japanese medaka)   23 8
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   22 8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   24 8
Danio_rerio_69_9   (Zebrafish)   28 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   11 4
Ciona_intestinalis_69   (Vase tunicate)   11 4
Drosophila_melanogaster_69_5   (Fruit fly)   3 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   31 12
Homo_sapiens__(NCBI_version)   (Human)   15 5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   15 5
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 2 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 9 7
STRING_v9.0.5_(STRING) 1106 588
Protein_Data_Bank_(all_PDB_sequenc) 20 10
Uniprot_2018_03_genome 26620 17028
NCBI_2017_08_genome 42720 27432
TargetDB__(Targets) 7 5
PDB_chains_(SCOP_1.75)_(PDB) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 18 8

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]