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Domain combinations for KRAB domain (Kruppel-associated box) superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a KRAB domain (Kruppel-associated box) domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1581 1566
Pan_troglodytes_76_2.1.4   (Chimpanzee)   349 343
Gorilla_gorilla_76_3.1   (Western gorilla)   368 363
Pongo_abelii_76_2   (Sumatran orangutan)   327 321
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   304 298
Papio_anubis_76   (Olive baboon)   370 363
Macaca_mulatta_76_1   (Rhesus monkey)   575 570
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   517 512
Otolemur_garnettii_76_3   (Small-eared galago)   253 249
Microcebus_murinus_76_1   (Gray mouse lemur)   149 147
Rattus_norvegicus_76_5.0   (Norway rat)   236 230
Mus_musculus_76_38   (House mouse)   712 704
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   70 70
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   88 85
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   168 161
Cavia_porcellus_76_3   (Domestic guinea pig)   30 29
Oryctolagus_cuniculus_76_2   (Rabbit)   99 98
Ochotona_princeps_76   (American pika)   85 85
Tupaia_belangeri_76   (Northern tree shrew)   190 189
Sus_scrofa_76_10.2   (Pig)   198 195
Bos_taurus_76_3.1   (Cattle)   248 245
Ovis_aries_76_3.1   (Sheep)   241 232
Vicugna_pacos_76_1   (Alpaca)   102 101
Tursiops_truncatus_76_1   (Bottlenose dolphin)   189 186
Mustela_putorius_furo_76_1.0   (Domestic ferret)   211 205
Ailuropoda_melanoleuca_76_1   (Giant panda)   272 264
Canis_familiaris_76_3.1   (Dog)   249 243
Felis_catus_76_6.2   (Domestic cat)   209 203
Equus_caballus_76_2   (Horse)   266 265
Myotis_lucifugus_76_2.0   (Little brown bat)   145 145
Pteropus_vampyrus_76_1   (Large flying fox)   155 153
Sorex_araneus_76_1   (European shrew)   52 52
Erinaceus_europaeus_76   (Western European hedgehog)   47 46
Procavia_capensis_76_1   (Cape rock hyrax)   115 115
Loxodonta_africana_76_3   (African savanna elephant)   62 60
Echinops_telfairi_76   (Small Madagascar hedgehog)   95 95
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   189 183
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   132 128
Macropus_eugenii_76_1.0   (Tammar wallaby)   39 38
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   203 202
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   467 463
Ornithorhynchus_anatinus_76_5   (Platypus)   38 38
Meleagris_gallopavo_76_2   (Turkey)   26 26
Gallus_gallus_76_4   (Chicken)   17 17
Anas_platyrhynchos_76_1.0   (Mallard)   10 10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   129 123
Anolis_carolinensis_76_2.0   (Green anole)   141 140
Xenopus_laevis_   (African clawed frog)   15 15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   37 37
Latimeria_chalumnae_76_1   (Coelacanth)   12 12

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   56 55

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   423 416
Pan_troglodytes_69_2.1.4   (Chimpanzee)   309 303
Gorilla_gorilla_69_3.1   (Western gorilla)   273 268
Pongo_abelii_69_2   (Sumatran orangutan)   312 306
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   304 299
Macaca_mulatta_69_1   (Rhesus monkey)   322 318
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   259 255
Otolemur_garnettii_69_3   (Small-eared galago)   244 240
Microcebus_murinus_69_1   (Gray mouse lemur)   149 147
Rattus_norvegicus_69_3.4   (Norway rat)   206 204
Mus_musculus_69_38   (House mouse)   353 350
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   70 70
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   86 83
Cavia_porcellus_69_3   (Domestic guinea pig)   24 23
Oryctolagus_cuniculus_69_2   (Rabbit)   43 43
Ochotona_princeps_69   (American pika)   85 85
Tupaia_belangeri_69   (Northern tree shrew)   190 189
Sus_scrofa_69_10.2   (Pig)   176 173
Bos_taurus_69_3.1   (Cattle)   215 212
Vicugna_pacos_69_1   (Alpaca)   102 101
Tursiops_truncatus_69_1   (Bottlenose dolphin)   189 186
Mustela_putorius_furo_69_1.0   (Domestic ferret)   211 205
Ailuropoda_melanoleuca_69_1   (Giant panda)   207 201
Canis_familiaris_69_3.1   (Dog)   196 192
Felis_catus_69   (Domestic cat)   133 130
Equus_caballus_69_2   (Horse)   216 215
Myotis_lucifugus_69_2.0   (Little brown bat)   136 136
Pteropus_vampyrus_69_1   (Large flying fox)   155 153
Sorex_araneus_69_1   (European shrew)   52 52
Erinaceus_europaeus_69   (Western European hedgehog)   47 46
Procavia_capensis_69_1   (Cape rock hyrax)   115 115
Loxodonta_africana_69_3   (African savanna elephant)   54 53
Echinops_telfairi_69   (Small Madagascar hedgehog)   95 95
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   129 128
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   132 128
Macropus_eugenii_69_1.0   (Tammar wallaby)   39 38
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   198 197
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   451 447
Ornithorhynchus_anatinus_69_5   (Platypus)   33 33
Meleagris_gallopavo_69_2   (Turkey)   17 17
Gallus_gallus_69_2   (Chicken)   28 28
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   116 110
Anolis_carolinensis_69_2.0   (Green anole)   103 102
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   31 31
Latimeria_chalumnae_69_1   (Coelacanth)   12 12

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1614 1600
Homo_sapiens__(NCBI_version)   (Human)   571 563
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   346 343
PDB_chains_(SCOP_1.75)_(PDB) 1 1
TargetDB__(Targets) 60 60
Protein_Data_Bank_(all_PDB_sequenc) 1 1
STRING_v9.0.5_(STRING) 3383 3342
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2 2
Uniprot_2018_03_genome 24944 24364
NCBI_2017_08_genome 65710 63839

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