SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for AF1104-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a AF1104-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   7 7
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_76_3.1   (Western gorilla)   2 2
Pongo_abelii_76_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   2 2
Papio_anubis_76   (Olive baboon)   2 2
Macaca_mulatta_76_1   (Rhesus monkey)   4 4
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_76_3   (Small-eared galago)   4 3
Microcebus_murinus_76_1   (Gray mouse lemur)   3 2
Rattus_norvegicus_76_5.0   (Norway rat)   2 2
Mus_musculus_76_38   (House mouse)   7 6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2 2
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   2 2
Bos_taurus_76_3.1   (Cattle)   2 2
Ovis_aries_76_3.1   (Sheep)   2 2
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   2 2
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   3 2
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_76_1   (Large flying fox)   2 2
Sorex_araneus_76_1   (European shrew)   3 2
Erinaceus_europaeus_76   (Western European hedgehog)   2 2
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   3 2
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   3 2
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   2 2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4 3
Anolis_carolinensis_76_2.0   (Green anole)   2 2
Xenopus_laevis_   (African clawed frog)   3 3
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_76_1   (Coelacanth)   2 2
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Gadus_morhua_76_1   (Atlantic cod)   3 2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_76_4   (Torafugu)   5 5
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5 4
Oryzias_latipes_76_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   3 2
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Danio_rerio_76_9   (Zebrafish)   2 2
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 2 2
Octopus_bimaculoides_280 3 2
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 2 2
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   3 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   3 2
Drosophila_grimshawi_1.3 5 5
Drosophila_willistoni_1.3 5 5
Drosophila_pseudoobscura_2.13 5 5
Drosophila_persimilis_1.3 5 5
Drosophila_suzukii 5 4
Drosophila_yakuba_1.3 5 5
Drosophila_simulans_1.3 5 5
Drosophila_sechellia_1.3 5 5
Drosophila_melanogaster_76_5   (Fruit fly)   7 7
Drosophila_erecta_1.3 5 5
Drosophila_ananassae_1.3 5 5
Drosophila_virilis_1.2 5 5
Drosophila_mojavensis_1.3 5 5
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 3 3
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   2 2
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 4 4
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 3 3
Mnemiopsis_leidyi   (Sea walnut)   2 2
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 3
Hydra_vulgaris 5 4
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 3 3
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Phycomyces_blakesleeanus_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 6 4
Sporisorium_reilianum_22 3 2
Ustilago_maydis_ 3 2
Mixia_osmundae_IAM_14324_v1.0 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Melampsora_laricis-populina_ 3 3
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 2 2
Wallemia_sebi_v1.0 2 2
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 2 2
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 2 2
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 4 4
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 2 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 2 2
Laccaria_bicolor_S238N-H82_ 2 2
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 2 2
Punctularia_strigosozonata_v1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 3 3
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 2 2
Tremella_mesenterica_   (Witches' butter)   2 2
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 3
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 4 4
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Selaginella_moellendorffii_ 4 4
Pinus_taeda   (Loblolly pine)   2 2
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   5 5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 12 12
Citrus_clementina_v165 4 4
Citrus_sinensis_v154   (Sweet orange)   9 9
Thellungiella_halophila_v173 3 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4 4
Capsella_rubella_v183 6 6
Arabidopsis_lyrata_   (Lyrate rockcress)   4 4
Arabidopsis_thaliana_10   (Thale cress)   6 6
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   10 10
Phaseolus_vulgaris_v186   (French bean)   4 4
Glycine_max_v109   (Soybean)   7 7
Cucumis_sativus_v122   (Cucumber)   5 5
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   28 28
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   5 4
Manihot_esculenta_v147   (Cassava)   3 3
Populus_trichocarpa_v156   (Black cottonwood)   6 6
Vitis_vinifera_   (Wine grape)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   3 3
Solanum_tuberosum_   (Potato)   8 7
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 3 2
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   6 6
Aegilops_tauschii_22 2 2
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   3 3
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 3 3
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 2 2
Oryza_nivara_22 3 3
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5 5
Oryza_sativa_v193   (Rice)   5 5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4 4
Panicum_virgatum_v202   (Switchgrass)   8 8
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   6 6
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   2 2
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 3 3
Physcomitrella_patens 3 3
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 3 3
Volvox_carteri_v199 2 2
Chlamydomonas_reinhardtii_4.0 3 3
Ostreococcus_sp._RCC809_ 4 4
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 4 4
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 3 3
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 3 3
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 5
Phytophthora_sojae_1.1 5 5
Phytophthora_infestans_T30-4_ 3 3
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 1 1
Thalassiosira_pseudonana_CCMP1335 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 2 2
Leptolyngbya_sp._PCC_7376 1 1
Synechocystis_sp._PCC_6803 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 1 1
Rivularia_sp._PCC_7116 1 1
'Nostoc_azollae'_0708 1 1
Nostoc_punctiforme_PCC_73102 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Streptosporangium_roseum_DSM_43021 1 1
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Thermincola_potens_JR 1 1
Pelotomaculum_thermopropionicum_SI 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_sticklandii_DSM_519 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_obeum 1 1
[Ruminococcus]_torques 1 1
Butyrivibrio_fibrisolvens 2 2
Alkaliphilus_oremlandii_OhILAs 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_cellulovorans_743B 1 1
Mahella_australiensis_50-1_BON 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_owensensis_OL 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermodesulfobium_narugense_DSM_14796 1 1
Ammonifex_degensii_KC4 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Halothermothrix_orenii_H_168 1 1
Halanaerobium_hydrogeniformans 1 1
Halanaerobium_praevalens_DSM_2228 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_limicola_DSM_245 1 1
Chlorobaculum_parvum_NCIB_8327 1 1
Prosthecochloris_aestuarii_DSM_271 1 1
Salinibacter_ruber_M8 1 1
Rhodothermus_marinus_DSM_4252 1 1
Phycisphaera_mikurensis_NBRC_102666 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Sphaerochaeta_globus_str._Buddy 1 1
Treponema_brennaborense_DSM_12168 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Thermodesulfobacterium_sp._OPB45 1 1
Marinitoga_piezophila_KA3 1 1
Petrotoga_mobilis_SJ95 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Thermotoga_sp._RQ2 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 1 1
Thermovibrio_ammonificans_HB-1 1 1
Desulfurobacterium_thermolithotrophum_DSM_11699 1 1
Thermocrinis_albus_DSM_14484 1 1
Aquifex_aeolicus_VF5 1 1
Dictyoglomus_turgidum_DSM_6724 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Caldisericum_exile_AZM16c01 1 1
Nautilia_profundicola_AmH 1 1
Nitratifractor_salsuginis_DSM_16511 1 1
Sulfurospirillum_deleyianum_DSM_6946 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 1 1
Sulfuricurvum_kujiense_DSM_16994 1 1
Sulfurimonas_autotrophica_DSM_16294 1 1
Sulfurimonas_denitrificans_DSM_1251 1 1
Wolinella_succinogenes_DSM_1740 1 1
Helicobacter_hepaticus_ATCC_51449 1 1
Helicobacter_mustelae_12198 1 1
Helicobacter_cinaedi_PAGU611 1 1
Nitratiruptor_sp._SB155-2 1 1
Sulfurovum_sp._NBC37-1 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Desulfobulbus_propionicus_DSM_2032 2 2
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 1 1
Desulfohalobium_retbaense_DSM_5692 2 2
Desulfomicrobium_baculatum_DSM_4028 1 1
Desulfovibrio_piezophilus 2 2
Desulfovibrio_aespoeensis_Aspo-2 2 2
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_alaskensis_G20 2 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 2 2
Desulfovibrio_salexigens_DSM_2638 2 2
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Hippea_maritima_DSM_10411 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Thiocystis_violascens_DSM_198 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Pyrolobus_fumarii_1A 2 2
Hyperthermus_butylicus_DSM_5456 1 1
Thermogladius_cellulolyticus_1633 1 1
Ignisphaera_aggregans_DSM_17230 2 2
Ignicoccus_hospitalis_KIN4/I 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Desulfurococcus_mucosus_DSM_2162 1 1
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 1 1
Vulcanisaeta_moutnovskia_768-28 2 2
Vulcanisaeta_distributa_DSM_14429 2 2
Caldivirga_maquilingensis_IC-167 2 2
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_conradii_HZ254 1 1
Methanocella_paludicola_SANAE 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 1 1
Methanospirillum_hungatei_JF-1 1 1
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 2 2
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Methanopyrus_kandleri_AV19 1 1
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 2 2
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 1 1
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_fervens_AG86 1 1
Methanocaldococcus_vulcanius_M7 1 1
methanocaldococcus_infernus_ME 1 1
Methanocaldococcus_jannaschii_DSM_2661 1 1
Methanothermococcus_okinawensis_IH1 1 1
Methanococcus_aeolicus_Nankai-3 1 1
Methanococcus_maripaludis_C5 1 1
Methanococcus_voltae_A3 1 1
Methanococcus_vannielii_SB 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   5 5
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   6 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Synechocystis_sp._PCC_6803 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7424 1 1
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Thermacetogenium_phaeum_DSM_12270 3 3
Salinibacter_ruber_DSM_13855 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Thermotoga_maritima_MSB8 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Desulfobacula_toluolica_Tol2 3 3
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 4 4
Desulfovibrio_vulgaris_RCH1 2 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Desulfovibrio_vulgaris_str._Hildenborough 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Desulfovibrio_desulfuricans_ND132 2 2
Thioflavicoccus_mobilis_8321 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1
Methanococcus_maripaludis_X1 1 1
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1
Methanococcus_maripaludis_S2 1 1
Methanobacterium_sp._SWAN-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   2 2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_69_3.1   (Western gorilla)   2 2
Pongo_abelii_69_2   (Sumatran orangutan)   2 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2 2
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_69_3   (Small-eared galago)   3 2
Microcebus_murinus_69_1   (Gray mouse lemur)   3 2
Rattus_norvegicus_69_3.4   (Norway rat)   3 2
Mus_musculus_69_38   (House mouse)   3 2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 2
Cavia_porcellus_69_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   2 2
Bos_taurus_69_3.1   (Cattle)   2 2
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   2 2
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_69_1   (Large flying fox)   2 2
Sorex_araneus_69_1   (European shrew)   3 2
Erinaceus_europaeus_69   (Western European hedgehog)   2 2
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   3 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   3 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 2
Anolis_carolinensis_69_2.0   (Green anole)   2 2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_69_1   (Coelacanth)   2 2
Gadus_morhua_69_1   (Atlantic cod)   3 2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_69_4   (Torafugu)   2 2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 2
Oryzias_latipes_69_1   (Japanese medaka)   2 2
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Danio_rerio_69_9   (Zebrafish)   2 2
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   5 5
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   4 4

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   6 6
Homo_sapiens__(NCBI_version)   (Human)   2 2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 2
Heliconius_numata__(Incomplete) 4 4
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Lotus_japonicus__(Early_assembly) 7 7
Malus_x_domestica_(Duplicate)   (Apple)   28 28
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 6 6
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3 3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   3 3
NCBI_plasmid_sequences_(Plasmids) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 25 25
PDB_chains_(SCOP_1.75)_(PDB) 3 3
TargetDB__(Targets) 49 49
STRING_v9.0.5_(STRING) 348 341
NCBI_2017_08_genome 3840 3808
Uniprot_2018_03_genome 4818 4753
Protein_Data_Bank_(all_PDB_sequenc) 11 11
Protozoadb_2010_08_(Protozoadb) 19 19

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