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Domain combinations for Kelch motif superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Kelch motif domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   202 172
Pan_troglodytes_76_2.1.4   (Chimpanzee)   84 67
Gorilla_gorilla_76_3.1   (Western gorilla)   103 86
Pongo_abelii_76_2   (Sumatran orangutan)   81 71
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   73 65
Papio_anubis_76   (Olive baboon)   79 66
Macaca_mulatta_76_1   (Rhesus monkey)   130 112
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   150 128
Otolemur_garnettii_76_3   (Small-eared galago)   82 68
Microcebus_murinus_76_1   (Gray mouse lemur)   65 53
Rattus_norvegicus_76_5.0   (Norway rat)   84 72
Mus_musculus_76_38   (House mouse)   132 114
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   65 57
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   76 64
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   65 57
Cavia_porcellus_76_3   (Domestic guinea pig)   77 66
Oryctolagus_cuniculus_76_2   (Rabbit)   84 71
Ochotona_princeps_76   (American pika)   74 58
Tupaia_belangeri_76   (Northern tree shrew)   63 53
Sus_scrofa_76_10.2   (Pig)   78 73
Bos_taurus_76_3.1   (Cattle)   76 64
Ovis_aries_76_3.1   (Sheep)   78 64
Vicugna_pacos_76_1   (Alpaca)   58 46
Tursiops_truncatus_76_1   (Bottlenose dolphin)   71 61
Mustela_putorius_furo_76_1.0   (Domestic ferret)   79 67
Ailuropoda_melanoleuca_76_1   (Giant panda)   78 70
Canis_familiaris_76_3.1   (Dog)   84 70
Felis_catus_76_6.2   (Domestic cat)   70 63
Equus_caballus_76_2   (Horse)   73 66
Myotis_lucifugus_76_2.0   (Little brown bat)   78 67
Pteropus_vampyrus_76_1   (Large flying fox)   71 62
Sorex_araneus_76_1   (European shrew)   59 51
Erinaceus_europaeus_76   (Western European hedgehog)   69 56
Procavia_capensis_76_1   (Cape rock hyrax)   66 54
Loxodonta_africana_76_3   (African savanna elephant)   89 79
Echinops_telfairi_76   (Small Madagascar hedgehog)   71 57
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   79 69
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   48 39
Macropus_eugenii_76_1.0   (Tammar wallaby)   73 60
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   77 70
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   84 72
Ornithorhynchus_anatinus_76_5   (Platypus)   78 70
Saccoglossus_kowalevskii_v3.0 125 103
Petromyzon_marinus_76_7.0   (Sea lamprey)   50 41
Meleagris_gallopavo_76_2   (Turkey)   72 63
Gallus_gallus_76_4   (Chicken)   66 59
Anas_platyrhynchos_76_1.0   (Mallard)   72 63
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   72 63
Ficedula_albicollis_76_1.0   (Collared flycatcher)   69 59
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   82 69
Anolis_carolinensis_76_2.0   (Green anole)   84 75
Xenopus_laevis_   (African clawed frog)   73 68
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   86 75
Latimeria_chalumnae_76_1   (Coelacanth)   95 86
Lepisosteus_oculatus_76   (Spotted gar)   103 90
Gadus_morhua_76_1   (Atlantic cod)   94 80
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   107 91
Takifugu_rubripes_76_4   (Torafugu)   229 210
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   120 108
Oryzias_latipes_76_1   (Japanese medaka)   121 106
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   87 80
Poecilia_formosa_76   (Amazon molly)   90 80
Oreochromis_niloticus_76_1.0   (Nile tilapia)   113 95
Astyanax_mexicanus_76   (Mexican tetra)   97 85
Danio_rerio_76_9   (Zebrafish)   136 122
Oikopleura_dioica 161 151
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   85 70
Ciona_intestinalis_76   (Vase tunicate)   69 63
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   58 55
Adineta_vaga 228 182
Octopus_bimaculoides_280 63 49
Crassostrea_gigas_22   (Pacific oyster)   76 68
Lottia_gigantea_   (Owl limpet)   58 52
Helobdella_robusta_ 64 59
Capitella_sp._I_ 267 248
Danaus_plexippus_OGS1.0   (Monarch butterfly)   25 18
Heliconius_melpomene_   (Postman butterfly)   26 19
Bombyx_mori_   (Domestic silkworm)   24 21
Nasonia_vitripennis_   (Jewel wasp)   25 20
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   42 36
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   25 16
Linepithema_humile_v1.1   (Argentine ant)   21 16
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   28 24
Solenopsis_invicta_v.2.2.3   (Red fire ant)   23 19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   18 13
Atta_cephalotes_v1.1 20 17
Camponotus_floridanus_v3.3   (Florida carpenter ant)   20 16
Lucilia_cuprina   (Australian sheep blowfly)   15 10
Drosophila_grimshawi_1.3 30 26
Drosophila_willistoni_1.3 20 15
Drosophila_pseudoobscura_2.13 23 17
Drosophila_persimilis_1.3 23 17
Drosophila_suzukii 29 19
Drosophila_yakuba_1.3 21 15
Drosophila_simulans_1.3 18 14
Drosophila_sechellia_1.3 27 22
Drosophila_melanogaster_76_5   (Fruit fly)   50 39
Drosophila_erecta_1.3 23 17
Drosophila_ananassae_1.3 21 16
Drosophila_virilis_1.2 22 16
Drosophila_mojavensis_1.3 23 17
Megaselia_scalaris_22 7 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   28 20
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   27 18
Anopheles_darlingi_22   (American malaria mosquito)   11 10
Anopheles_gambiae_49_3j   (African malaria mosquito)   20 14
Tribolium_castaneum_3.0   (Red flour beetle)   26 21
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   22 18
Acyrthosiphon_pisum_   (Pea aphid)   111 90
Rhodnius_prolixus_22 28 25
Daphnia_pulex_   (Common water flea)   35 31
Strigamia_maritima_22 63 54
Sarcoptes_scabiei 17 13
Tetranychus_urticae_   (Two-spotted spider mite)   22 21
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   44 37
Pristionchus_pacificus_ 26 26
Meloidogyne_incognita_   (Southern root-knot nematode)   16 15
Meloidogyne_hapla_ 7 6
Onchocerca_volvulus_22 17 13
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   32 25
Caenorhabditis_japonica_ 15 12
Caenorhabditis_brenneri_ 21 19
Caenorhabditis_remanei_ 18 16
Caenorhabditis_elegans_76_235   (Roundworm)   32 25
Caenorhabditis_briggsae_2 14 12
Trichinella_spiralis_22 14 12
Hymenolepis_microstoma_ 39 35
Echinococcus_multilocularis_ 21 20
Echinococcus_granulosus_ 23 19
Taenia_solium_   (Pork tapeworm)   26 22
Schistosoma_mansoni_ 23 19
Mnemiopsis_leidyi   (Sea walnut)   46 40
Thelohanellus_kitauei 145 132
Acropora_digitifera_v1.0 94 82
Nematostella_vectensis_1.0   (Starlet sea anemone)   88 72
Hydra_vulgaris 30 25
Amphimedon_queenslandica 418 380
Trichoplax_adhaerens_ 30 24
Proterospongia_sp._ATCC_50818_ 45 32
Monosiga_brevicollis_ 47 36
Sphaeroforma_arctica_JP610_ 13 11
Capsaspora_owczarzaki_ATCC_30864_ 15 13
Conidiobolus_coronatus_NRRL28638_v1.0 79 76
Mortierella_verticillata_NRRL_6337_ 70 65
Phycomyces_blakesleeanus_ 45 41
Rhizopus_oryzae_RA_99-880_ 34 33
Mucor_circinelloides_ 47 40
Rhizomucor_miehei_CAU432_ 31 30
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 9 6
Ustilago_maydis_ 6 5
Mixia_osmundae_IAM_14324_v1.0 7 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 10 9
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 16 13
Melampsora_laricis-populina_ 10 10
Rhodotorula_graminis_WP1_v1.0 9 8
Sporobolomyces_roseus_IAM_13481_ 6 6
Microbotryum_violaceum_22 8 7
Wallemia_sebi_v1.0 5 5
Sphaerobolus_stellatus_v1.0 17 17
Piloderma_croceum_F_1598_v1.0 10 10
Serpula_lacrymans_var._lacrymans_S7.9_ 5 4
Coniophora_puteana 7 6
Hydnomerulius_pinastri_v2.0 8 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 9 7
Pisolithus_microcarpus_441_v1.0 9 8
Pisolithus_tinctorius_Marx_270_v1.0 9 8
Scleroderma_citrinum_Foug_A_v1.0 9 9
Coprinopsis_cinerea_okayama7_130_v3 9 7
Pleurotus_ostreatus_   (Oyster mushroom)   12 9
Amanita_thiersii_Skay4041_v1.0 7 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   9 6
Galerina_marginata_v1.0 20 18
Hebeloma_cylindrosporum_h7_v2.0 10 9
Laccaria_bicolor_S238N-H82_ 13 13
Agaricus_bisporus_var._bisporus_ 12 8
Schizophyllum_commune_ 7 6
Stereum_hirsutum_FP-91666_SS1__v1.0 11 9
Heterobasidion_annosum_ 5 4
Gloeophyllum_trabeumv1.0 9 9
Punctularia_strigosozonata_v1.0 7 7
Sebacina_vermifera_MAFF_305830_v1.0 7 6
Fomitiporia_mediterranea_v1.0 7 6
Tulasnella_calospora_AL13/4D_v1.0 22 21
Postia_placenta_ 12 12
Wolfiporia_cocos_MD-104_SS10__v1.0 8 8
Fomitopsis_pinicolav1.0 8 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8 7
Phanerochaete_chrysosporium_RP-78_2.1 9 8
Dichomitus_squalens 11 10
Trametes_versicolor_v1.0 10 9
Tremella_mesenterica_   (Witches' butter)   10 8
Daldinia_eschscholzii_EC12_v1.0 8 8
Apiospora_montagnei_NRRL_25634_v1.0 11 10
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 14 14
Podospora_anserina_ 8 7
Sporotrichum_thermophile_ATCC_42464_ 9 9
Thielavia_terrestris_NRRL_8126_ 11 10
Chaetomium_globosum_CBS_148.51_ 9 9
Neurospora_tetrasperma_ 12 12
Neurospora_discreta_FGSC_8579_ 11 11
Neurospora_crassa_OR74A_ 12 12
Cryphonectria_parasitica_   (Chestnut blight fungus)   9 9
Verticillium_albo-atrum_VaMs.102_ 14 14
Verticillium_dahliae_VdLs.17_ 14 13
Acremonium_alcalophilumv_1.0 7 7
Glomerella_graminicola_22 13 11
Fusarium_graminearum_ 13 12
Nectria_haematococca_mpVI_ 10 10
Fusarium_oxysporum_f._sp._lycopersici_4286_ 16 15
Fusarium_verticillioides_7600_ 10 10
Trichoderma_asperellum_CBS_433.97_v1.0 10 8
Trichoderma_atroviride_ 6 6
Trichoderma_citrinoviride_v1.0 9 8
Trichoderma_reesei_1.2 8 8
Trichoderma_virens_Gv29-8_ 8 7
Trichoderma_longibrachiatum_ATCC_18648_v1.0 9 8
Trichoderma_harzianum_CBS_226.95_v1.0 9 8
Amorphotheca_resinae_v1.0   (Creosote fungus)   9 8
Botrytis_cinerea_B05.10_ 14 13
Sclerotinia_sclerotiorum_ 10 10
Blumeria_graminis_22 8 7
Didymella_exigua_CBS_183.55_v1.0 10 10
Leptosphaeria_maculans_22 9 9
Setosphaeria_turcica_v1.0 10 10
Cochliobolus_miyabeanus_ATCC_44560_v1.0 8 8
Cochliobolus_victoriae_FI3_v1.0 8 8
Cochliobolus_carbonum_26-R-13_v1.0 8 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   10 10
Alternaria_brassicicola_ 11 10
Cochliobolus_lunatus_m118_v2.0 9 9
Pyrenophora_teres_f._teres_22 13 12
Pyrenophora_tritici-repentis_ 8 7
Stagonospora_nodorum_ 10 9
Mycosphaerella_graminicola_IPO323_ 10 9
Zasmidium_cellare_ATCC_36951_v1.0 12 12
Dothistroma_septosporum 8 8
Septoria_musiva_v1.0 8 8
Mycosphaerella_fijiensis_CIRAD86_ 7 7
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 10 9
Paracoccidioides_brasiliensis_Pb18_ 6 6
Coccidioides_posadasii_RMSCC_3488_ 5 5
Coccidioides_immitis_RS_ 4 4
Ajellomyces_dermatitidis_SLH14081_ 8 7
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7 7
Microsporum_canis_CBS_113480_ 5 5
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 5 5
Arthroderma_benhamiae_CBS_112371_ 5 5
Trichophyton_tonsurans_CBS_112818_ 4 4
Trichophyton_rubrum_CBS_118892_ 5 5
Uncinocarpus_reesii_1704_ 6 6
Aspergillus_zonatus_v1.0 6 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 6 6
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 9 9
Aspergillus_fumigatus_Af293 7 6
Aspergillus_brasiliensis_v1.0 7 7
Aspergillus_nidulans_FGSC_A4_ 7 7
Aspergillus_sydowii_v1.0 9 9
Aspergillus_versicolor_v1.0 9 8
Aspergillus_glaucus 6 6
Aspergillus_carbonarius_ITEM_5010_ 6 5
Neosartorya_fischeri_NRRL_181_ 7 6
Aspergillus_terreus_NIH2624_ 10 8
Aspergillus_tubingensis_v1.0 8 7
Aspergillus_wentii_v1.0 9 8
Aspergillus_oryzae_RIB40_ 8 8
Aspergillus_niger_22 7 7
Aspergillus_niger_ATCC_1015_ 6 5
Aspergillus_flavus_NRRL3357_ 7 7
Aspergillus_clavatus_NRRL_1_ 5 5
Penicillium_marneffei_ATCC_18224_ 8 8
Tuber_melanosporum_Mel28_22 5 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   15 15
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 7 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 7 7
Candida_tropicalis_MYA-3404_ 7 7
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 6 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 5
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 4 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 7 7
Wickerhamomyces_anomalus 6 6
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4 4
Yarrowia_lipolytica_CLIB122 7 7
Candida_lusitaniae_ATCC_42720_ 4 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 7 5
Candida_glabrata_CBS138 6 6
Kluyveromyces_thermotolerans_CBS_6340 3 3
Lachancea_kluyveri_ 4 4
Kluyveromyces_waltii 3 3
Ashbya_gossypii_ATCC_10895_ 5 4
Zygosaccharomyces_rouxii_ 3 3
Saccharomyces_mikatae_MIT 7 6
Saccharomyces_paradoxus_MIT 7 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   8 6
Saccharomyces_bayanus_MIT 6 6
Kluyveromyces_lactis 5 4
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 4 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 26 24
Allomyces_macrogynus_ATCC_38327_ 53 51
Spizellomyces_punctatus_DAOM_BR117_ 21 17
Dictyostelium_discoideum 38 27
Dictyostelium_purpureum_ 29 25
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 2 2
Entamoeba_histolytica_1 2 2
Selaginella_moellendorffii_ 196 188
Pinus_taeda   (Loblolly pine)   156 144
Picea_abies   (Norway spruce)   110 106
Eucalyptus_grandis_v201   (Rose gum)   79 71
Theobroma_cacao_B97-61/B2_v1   (Cacao)   60 57
Gossypium_raimondii_v221 162 157
Citrus_clementina_v165 68 64
Citrus_sinensis_v154   (Sweet orange)   95 90
Thellungiella_halophila_v173 199 192
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   240 235
Capsella_rubella_v183 194 187
Arabidopsis_lyrata_   (Lyrate rockcress)   218 208
Arabidopsis_thaliana_10   (Thale cress)   171 163
Carica_papaya_   (Papaya)   42 39
Medicago_truncatula_   (Barrel medic)   91 86
Phaseolus_vulgaris_v186   (French bean)   67 61
Glycine_max_v109   (Soybean)   148 137
Cucumis_sativus_v122   (Cucumber)   70 65
Fragaria_vesca_   (Wild strawberry)   100 97
Malus_domestica_v196   (Apple)   119 115
Prunus_persica_v139   (Peach)   54 51
Linum_usitatissimum_v200   (Flax)   78 70
Manihot_esculenta_v147   (Cassava)   71 69
Populus_trichocarpa_v156   (Black cottonwood)   84 79
Vitis_vinifera_   (Wine grape)   48 46
Mimulus_guttatus_v140   (Spotted monkey flower)   52 50
Solanum_lycopersicum_v.2.3   (Tomato)   58 54
Solanum_tuberosum_   (Potato)   88 83
Actinidia_chinensis_Hongyang_ 80 77
Aquilegia_coerulea_v195 109 95
Triticum_urartu_22 45 43
Triticum_aestivum_22   (Bread wheat)   157 148
Aegilops_tauschii_22 51 49
Brachypodium_distachyon_   (Stiff brome)   59 53
Oryza_barthii_22   (African wild rice)   56 51
Oryza_meridionalis_22 77 69
Oryza_glumaepatula_22 70 65
Oryza_glaberrima   (African rice)   55 51
Oryza_punctata_22 86 75
Oryza_nivara_22 89 82
Oryza_brachyantha_22   (Malo sina)   44 40
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   103 94
Oryza_sativa_v193   (Rice)   103 94
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   73 67
Panicum_virgatum_v202   (Switchgrass)   123 115
Setaria_italica_v164   (Foxtail millet)   64 61
Zea_mays_subsp._mays_   (Maize)   133 118
Zea_mays_v181   (Maize)   137 121
Sorghum_bicolor_   (Sorghum)   58 54
Musa_balbisiana   (Balbis banana)   89 83
Musa_acuminata_22   (Wild Malaysian banana)   79 75
Amborella_trichopoda_22 57 55
Physcomitrella_patens 129 125
Coccomyxa_subellipsoidea_sp._C-169_v2 22 17
Asterochloris_sp._Cgr/DA1pho_v1.0 13 10
Chlorella_variabilis_sp._NC64A_ 18 14
Chlorella_vulgaris_ 23 19
Volvox_carteri_f._nagariensis_ 24 20
Volvox_carteri_v199 26 22
Chlamydomonas_reinhardtii_4.0 27 23
Ostreococcus_sp._RCC809_ 14 11
Ostreococcus_lucimarinus_CCE9901_ 15 12
Ostreococcus_tauri_ 13 11
Bathycoccus_prasinos_ 10 7
Micromonas_sp._RCC299_ 17 15
Micromonas_pusilla_CCMP1545_v3.0 21 15
Cyanidioschyzon_merolae_strain_10D_22 23 20
Cyanidioschyzon_merolae 22 20
Porphyridium_purpureum_02_2012 7 5
Thecamonas_trahens_ATCC_50062_ 35 28
Bigelowiella_natans_CCMP2755_22 60 52
Giardia_lamblia_2.3 12 11
Cyanophora_paradoxa_ 104 94
Leishmania_mexicana_2.4 18 15
Leishmania_major_strain_Friedlin_ 17 15
Leishmania_infantum_JPCM5_2.4 17 15
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 17 13
Trypanosoma_vivax_ 17 13
Trypanosoma_cruzi_strain_CL_Brener 15 13
Trypanosoma_congolense_2.4 21 18
Trypanosoma_brucei_gambiense_v4.1 21 17
Trypanosoma_brucei_TREU927_v4.1 20 17
Ectocarpus_siliculosus 31 26
Aureococcus_anophagefferens_ 25 22
Albugo_laibachii_22 34 29
Pythium_iwayamai_DAOM_BR242034_22 23 20
Pythium_arrhenomanes_ATCC_12531_22 22 21
Pythium_ultimum_v1.7-2 27 21
Pythium_aphanidermatum_DAOM_BR444_22 21 18
Pythium_irregulare_DAOM_BR486_22 28 20
Pythium_vexans_DAOM_BR484_22 25 21
Phytophthora_ramorum_1.1   (Sudden oak death agent)   18 17
Phytophthora_sojae_1.1 23 17
Phytophthora_infestans_T30-4_ 32 27
Phytophthora_capsici_ 26 20
Hyaloperonospora_arabidopsidis_22 11 8
Phaeodactylum_tricornutumCCAP_1055/1 9 7
Fragilariopsis_cylindrus 24 19
Thalassiosira_pseudonana_CCMP1335 20 14
Perkinsus_marinus_ATCC_50983_ 37 27
Paramecium_tetraurelia_ 140 118
Tetrahymena_thermophila_SB210_1_ 74 63
Ichthyophthirius_multifiliis_strain_G5_ 41 39
Cryptosporidium_hominis 5 4
Cryptosporidium_muris 9 6
Cryptosporidium_parvum_Iowa_II 7 5
Neospora_caninum 14 12
Toxoplasma_gondii_VEG 13 9
Toxoplasma_gondii_ME49 15 11
Toxoplasma_gondii_GT1 16 12
Babesia_bovis_T2Bo_ 14 12
Theileria_parva__ 9 8
Theileria_annulata 10 7
Plasmodium_falciparum_3D7_ 10 9
Plasmodium_vivax_SaI-1_7.0 15 12
Plasmodium_knowlesi_strain_H_ 13 10
Plasmodium_yoelii_ssp._yoelii_1_ 15 12
Plasmodium_chabaudi_ 12 10
Plasmodium_berghei_ANKA_ 11 9
Symbiodinium_minutum_clade_B1_v1.2 133 105
Naegleria_gruberi_ 72 66
Trichomonas_vaginalis_ 43 43
Guillardia_theta_CCMP2712_v1.0_ 89 63
Emiliania_huxleyi_CCMP1516_ 61 55
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Gloeocapsa_sp._PCC_7428 1 1
Gloeobacter_violaceus_PCC_7421 4 4
Conexibacter_woesei_DSM_14684 2 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 1 1
Acidothermus_cellulolyticus_11B 2 1
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinosynnema_mirum_DSM_43827 2 1
Kribbella_flavida_DSM_17836 2 2
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 1 1
Rhodococcus_jostii_RHA1 2 1
Rhodococcus_opacus_B4 2 1
Amycolicicoccus_subflavus_DQS3-9A1 3 1
Mycobacterium_sp._JLS 1 1
Mycobacterium_intracellulare_ATCC_13950 3 1
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_rhodesiae_NBB3 1 1
Mycobacterium_chubuense_NBB4 3 1
Anaerolinea_thermophila_UNI-1 2 1
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 7 6
Roseiflexus_sp._RS-1 3 2
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 3 3
Chloroflexus_sp._Y-400-fl 4 3
Chloroflexus_aggregans_DSM_9485 2 2
Chloroflexus_aurantiacus_J-10-fl 4 3
Truepera_radiovictrix_DSM_17093 2 2
Deinococcus_deserti_VCD115 2 1
Deinococcus_geothermalis_DSM_11300 1 1
Meiothermus_silvanus_DSM_9946 1 1
Megamonas_hypermegale 1 1
Clostridium_clariflavum_DSM_19732 2 2
Clostridium_cellulolyticum_H10 4 2
Sulfobacillus_acidophilus_DSM_10332 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfotomaculum_kuznetsovii_DSM_6115 2 2
Eubacterium_limosum_KIST612 5 5
Clostridium_sp._BNL1100 3 3
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 9 5
Clostridium_botulinum_A_str._ATCC_3502 1 1
Mahella_australiensis_50-1_BON 1 1
Streptococcus_pneumoniae_P1031 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_mucilaginosus_3016 1 1
Bacillus_amyloliquefaciens_FZB42 2 1
Gemmatimonas_aurantiaca_T-27 1 1
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 1 1
Haliscomenobacter_hydrossis_DSM_1100 4 4
Niastella_koreensis_GR20-10 3 3
Chitinophaga_pinensis_DSM_2588 3 2
Rhodothermus_marinus_DSM_4252 1 1
Belliella_baltica_DSM_15883 1 1
Cyclobacterium_marinum_DSM_745 5 5
Fibrella_aestuarina 3 3
Leadbetterella_byssophila_DSM_17132 2 2
Dyadobacter_fermentans_DSM_18053 5 5
Cytophaga_hutchinsonii_ATCC_33406 4 2
Spirosoma_linguale_DSM_74 4 4
Parabacteroides_distasonis_ATCC_8503 4 3
Tannerella_forsythia_ATCC_43037 2 2
Paludibacter_propionicigenes_WB4 3 3
Odoribacter_splanchnicus_DSM_20712 5 4
Bacteroides_sp._CF50 2 1
Prevotella_melaninogenica_ATCC_25845 1 1
Prevotella_denticola_F0289 1 1
Prevotella_ruminicola_23 1 1
Bacteroides_salanitronis_DSM_18170 1 1
Bacteroides_helcogenes_P_36-108 2 2
Bacteroides_vulgatus_ATCC_8482 1 1
Bacteroides_thetaiotaomicron_VPI-5482 1 1
Bacteroides_fragilis_YCH46 8 8
Pedobacter_saltans_DSM_12145 1 1
Pedobacter_heparinus_DSM_2366 4 4
Sphingobacterium_sp._21 3 2
Fluviicola_taffensis_DSM_16823 1 1
Owenweeksia_hongkongensis_DSM_17368 3 3
Maribacter_sp._HTCC2170 5 4
Robiginitalea_biformata_HTCC2501 3 3
Aequorivita_sublithincola_DSM_14238 1 1
Zobellia_galactanivorans 5 5
Muricauda_ruestringensis_DSM_13258 4 4
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Ornithobacterium_rhinotracheale_DSM_15997 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Flavobacterium_johnsoniae_UW101 2 2
Phycisphaera_mikurensis_NBRC_102666 2 2
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 4 2
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 3 3
Pirellula_staleyi_DSM_6068 6 3
Opitutus_terrae_PB90-1 3 2
Akkermansia_muciniphila_ATCC_BAA-835 2 2
Turneriella_parva_DSM_21527 2 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 2 1
Leptospira_interrogans_serovar_Lai_str._IPAV 4 4
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 4 3
Brachyspira_murdochii_DSM_12563 1 1
Brachyspira_intermedia_PWS/A 1 1
Brachyspira_pilosicoli_95/1000 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Candidatus_Chloracidobacterium_thermophilum_B 3 1
Candidatus_Solibacter_usitatus_Ellin6076 2 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 8 5
Terriglobus_roseus_DSM_18391 1 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 2 1
Candidatus_Saccharimonas_aalborgensis 5 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Geobacter_daltonii_FRC-32 2 1
Haliangium_ochraceum_DSM_14365 4 3
Sorangium_cellulosum_'So_ce_56' 11 9
Stigmatella_aurantiaca_DW4/3-1 15 10
Corallococcus_coralloides_DSM_2259 20 12
Myxococcus_xanthus_DK_1622 7 4
Myxococcus_fulvus_HW-1 3 2
Thauera_sp._MZ1T 1 1
Azoarcus_sp._BH72 1 1
Cupriavidus_necator_N-1 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Variovorax_paradoxus_S110 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 3 2
Nitrosomonas_sp._Is79A3 1 1
Sideroxydans_lithotrophicus_ES-1 2 1
Caulobacter_sp._K31 1 1
Hyphomonas_neptunium_ATCC_15444 2 1
Azospirillum_brasilense_Sp245 2 2
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_populi_BJ001 1 1
Parvibaculum_lavamentivorans_DS-1 2 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Pelagibacterium_halotolerans_B2 1 1
Aggregatibacter_aphrophilus_NJ8700 1 1
Aggregatibacter_actinomycetemcomitans_D7S-1 1 1
Gallibacterium_anatis_UMN179 1 1
Pasteurella_multocida_subsp._multocida_str._3480 1 1
Haemophilus_influenzae_PittEE 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 3 2
Psychromonas_sp._CNPT3 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 2 2
Shewanella_loihica_PV-4 2 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_frigidimarina_NCIMB_400 2 1
Colwellia_psychrerythraea_34H 1 1
Pseudoalteromonas_atlantica_T6c 2 2
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Kangiella_koreensis_DSM_16069 2 1
Hahella_chejuensis_KCTC_2396 1 1
Methylomicrobium_alcaliphilum 2 2
Pseudoxanthomonas_suwonensis_11-1 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Nitrosopumilus_maritimus_SCM1 4 2
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Methanosphaerula_palustris_E1-9c 2 1
Methanoculleus_bourgensis_MS2 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Pyrococcus_furiosus_COM1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   118 103
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   44 33
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   20 14
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   17 14
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   27 21
Cryptococcus_neoformans_var._grubii_H99_ 3 2
Cryptococcus_neoformans_B-3501A_ 5 4
Cryptococcus_neoformans_JEC21_ 5 4
Paracoccidioides_brasiliensis_Pb01_ 7 7
Paracoccidioides_brasiliensis_Pb03_ 6 6
Coccidioides_posadasii_str._Silveira_ 5 5
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 6 6
Coccidioides_immitis_H538.4_ 5 5
Ajellomyces_dermatitidis_ER-3_ 6 6
Histoplasma_capsulatum_H143 9 8
Histoplasma_capsulatum_H88 9 8
Histoplasma_capsulatum_G186AR 8 8
Aspergillus_fumigatus_A1163_ 7 6
Candida_albicans_WO-1_ 4 4
Saccharomyces_cerevisiae_UC5 7 6
Saccharomyces_cerevisiae_PW5 4 4
Saccharomyces_cerevisiae_FL100 4 2
Saccharomyces_cerevisiae_CLIB324 3 3
Saccharomyces_cerevisiae_CBS7960 6 5
Saccharomyces_cerevisiae_YJM269 7 6
Saccharomyces_cerevisiae_T7 8 7
Saccharomyces_cerevisiae_FostersB 4 3
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 6 5
Saccharomyces_cerevisiae_Vin13 5 5
Saccharomyces_cerevisiae_LalvinQA23 5 4
Saccharomyces_cerevisiae_AWRI796 6 6
Saccharomyces_cerevisiae_Sigma1278b 8 6
Saccharomyces_cerevisiae_W303 8 6
Saccharomyces_cerevisiae_JAY291 9 7
Saccharomyces_cerevisiae_AWRI1631 5 4
Saccharomyces_cerevisiae_YPS163 3 2
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 7 6
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 8 6
Saccharomyces_cerevisiae_YJM789 8 6
Saccharomyces_cerevisiae_RM11-1a 8 6
Saccharomyces_cerevisiae_RM11-1a_ 8 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   8 6
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 10 9
Batrachochytrium_dendrobatidis_JAM81_ 10 9
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   55 52
Hordeum_vulgare_22   (Domesticated barley)   113 112
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   55 51
Trypanosoma_brucei_Lister_427_v4.1 21 17
Neospora_caninum_Nc-Liverpool_6.2 14 12
Plasmodium_falciparum_HB3_ 10 9
Plasmodium_falciparum_Dd2_ 12 10
Crinalium_epipsammum_PCC_9333 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Frankia_sp._CcI3 1 1
Streptomyces_venezuelae_ATCC_10712 2 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Actinoplanes_friuliensis_DSM_7358 2 2
Mycobacterium_sp._MOTT36Y 3 1
Mycobacterium_sp._KMS 3 1
Mycobacterium_sp._MCS 3 1
Mycobacterium_yongonense_05-1390 3 1
Mycobacterium_intracellulare_MOTT-64 1 1
Mycobacterium_indicus_pranii_MTCC_9506 2 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_kansasii_ATCC_12478 3 1
Deinococcus_peraridilitoris_DSM_19664 3 3
Clostridium_thermocellum_DSM_1313 1 1
Sulfobacillus_acidophilus_TPY 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_botulinum_H04402_065 2 2
Clostridium_botulinum_F_str._230613 2 1
Clostridium_botulinum_F_str._Langeland 3 2
Clostridium_botulinum_B1_str._Okra 2 2
Clostridium_botulinum_Ba4_str._657 3 2
Clostridium_botulinum_A2_str._Kyoto 3 2
Clostridium_botulinum_A3_str._Loch_Maree 2 2
Clostridium_botulinum_A_str._Hall 3 2
Clostridium_botulinum_A_str._ATCC_19397 2 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_R6 1 1
Paenibacillus_sp._Y412MC10 2 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 4 3
Paenibacillus_polymyxa_E681 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2 1
Bacillus_amyloliquefaciens_CC178 2 1
Bacillus_amyloliquefaciens_XH7 2 1
Bacillus_amyloliquefaciens_TA208 2 1
Bacillus_amyloliquefaciens_DSM_7 2 1
Rhodothermus_marinus_SG0.5JP17-172 2 2
Echinicola_vietnamensis_DSM_17526 2 2
Emticicia_oligotrophica_DSM_17448 1 1
Prevotella_sp._oral_taxon_299_str._F0039 1 1
Prevotella_dentalis_DSM_3688 1 1
Bacteroides_xylanisolvens_XB1A 2 2
Bacteroides_fragilis_638R 5 5
Bacteroides_fragilis_NCTC_9343 7 7
Nonlabens_dokdonensis_DSW-6 5 3
Singulisphaera_acidiphila_DSM_18658 4 3
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 2 2
Leptospira_interrogans_serovar_Lai_str._56601 4 4
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 2 2
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 4 3
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1 1
Sorangium_cellulosum_So0157-2 17 10
Anaeromyxobacter_dehalogenans_2CP-C 2 1
Myxococcus_stipitatus_DSM_14675 15 7
Ralstonia_solanacearum_PSI07 1 1
Burkholderia_thailandensis_MSMB121 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 2 1
Nitrosomonas_sp._AL212 3 3
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 2 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Aggregatibacter_actinomycetemcomitans_ANH9381 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Pasteurella_multocida_36950 1 1
Pasteurella_multocida_subsp._multocida_str._HN06 1 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1 1
Haemophilus_influenzae_KR494 1 1
Haemophilus_influenzae_F3047 1 1
Haemophilus_influenzae_F3031 1 1
Haemophilus_influenzae_10810 1 1
Haemophilus_influenzae_PittGG 1 1
Haemophilus_influenzae_86-028NP 1 1
Haemophilus_influenzae_R2866 1 1
Haemophilus_influenzae_R2846 1 1
Haemophilus_influenzae_Rd_KW20 1 1
Vibrio_sp._EJY3 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 3 2
Vibrio_cholerae_M66-2 3 2
Vibrio_cholerae_O395 3 2
Vibrio_cholerae_IEC224 3 2
Vibrio_cholerae_O1_str._2010EL-1786 3 2
Vibrio_cholerae_MJ-1236 3 2
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 3 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U4' 3 3
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2 2
Alteromonas_macleodii_str._'English_Channel_615' 2 2
Alteromonas_macleodii_AltDE1 3 3
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2 2
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Morganella_morganii_subsp._morganii_KT 1 1
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_boydii_Sb227 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 2 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 2 2
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_JJ1886 2 2
Escherichia_coli_LY180 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_str._'clone_D_i2' 2 2
Escherichia_coli_str._'clone_D_i14' 2 2
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_ABU_83972 2 2
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 2 2
Escherichia_coli_IAI39 1 1
Escherichia_coli_UMN026 2 2
Escherichia_coli_S88 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 2 2
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Pseudomonas_fluorescens_Pf0-1 2 2
Sulfolobus_islandicus_LAL14/1 2 1
Sulfolobus_islandicus_REY15A 2 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 2 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Methanolobus_psychrophilus_R15 3 3
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   84 69
Pan_troglodytes_69_2.1.4   (Chimpanzee)   84 67
Gorilla_gorilla_69_3.1   (Western gorilla)   77 65
Pongo_abelii_69_2   (Sumatran orangutan)   79 69
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   64 57
Macaca_mulatta_69_1   (Rhesus monkey)   76 64
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   80 67
Otolemur_garnettii_69_3   (Small-eared galago)   81 67
Microcebus_murinus_69_1   (Gray mouse lemur)   65 53
Rattus_norvegicus_69_3.4   (Norway rat)   71 61
Mus_musculus_69_38   (House mouse)   78 68
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   65 57
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   75 63
Cavia_porcellus_69_3   (Domestic guinea pig)   77 66
Oryctolagus_cuniculus_69_2   (Rabbit)   81 68
Ochotona_princeps_69   (American pika)   74 58
Tupaia_belangeri_69   (Northern tree shrew)   63 53
Sus_scrofa_69_10.2   (Pig)   73 68
Bos_taurus_69_3.1   (Cattle)   73 62
Vicugna_pacos_69_1   (Alpaca)   58 46
Tursiops_truncatus_69_1   (Bottlenose dolphin)   71 61
Mustela_putorius_furo_69_1.0   (Domestic ferret)   79 67
Ailuropoda_melanoleuca_69_1   (Giant panda)   71 63
Canis_familiaris_69_3.1   (Dog)   76 63
Felis_catus_69   (Domestic cat)   61 50
Equus_caballus_69_2   (Horse)   70 63
Myotis_lucifugus_69_2.0   (Little brown bat)   78 67
Pteropus_vampyrus_69_1   (Large flying fox)   71 62
Sorex_araneus_69_1   (European shrew)   59 51
Erinaceus_europaeus_69   (Western European hedgehog)   69 56
Procavia_capensis_69_1   (Cape rock hyrax)   66 54
Loxodonta_africana_69_3   (African savanna elephant)   73 64
Echinops_telfairi_69   (Small Madagascar hedgehog)   71 57
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   58 49
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   48 39
Macropus_eugenii_69_1.0   (Tammar wallaby)   73 60
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   68 61
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   80 69
Ornithorhynchus_anatinus_69_5   (Platypus)   72 64
Petromyzon_marinus_69_7.0   (Sea lamprey)   46 38
Meleagris_gallopavo_69_2   (Turkey)   67 58
Gallus_gallus_69_2   (Chicken)   70 60
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   71 62
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   68 59
Anolis_carolinensis_69_2.0   (Green anole)   79 72
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   72 62
Latimeria_chalumnae_69_1   (Coelacanth)   82 74
Gadus_morhua_69_1   (Atlantic cod)   83 70
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   94 81
Takifugu_rubripes_69_4   (Torafugu)   87 77
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   86 75
Oryzias_latipes_69_1   (Japanese medaka)   86 75
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   87 80
Oreochromis_niloticus_69_1.0   (Nile tilapia)   100 84
Danio_rerio_69_9   (Zebrafish)   92 83
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   38 31
Ciona_intestinalis_69   (Vase tunicate)   67 61
Drosophila_melanogaster_69_5   (Fruit fly)   24 17
Caenorhabditis_elegans_69_215   (Roundworm)   20 16
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   8 6
Arabidopsis_thaliana_10   (Thale cress)   141 136

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   224 190
Homo_sapiens__(NCBI_version)   (Human)   111 92
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   76 66
Heliconius_numata__(Incomplete) 4 4
Loa_loa_v3.3_(Request)   (Eye worm)   22 18
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   28 26
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   19 15
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   7 7
Lotus_japonicus__(Early_assembly) 51 49
Malus_x_domestica_(Duplicate)   (Apple)   119 115
Ricinus_communis__(Early_assembly)   (Castor bean)   48 48
Nicotiana_benthamiana_0.4.4_(Early_draft) 118 115
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   57 53
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   58 54
Phoenix_dactylifera__(Early_draft)   (Date palm)   35 32
NCBI_plasmid_sequences_(Plasmids) 11 8
PDB_chains_(SCOP_1.75)_(PDB) 4 4
UniProt__viral_sequences_(Viral) 231 231
TargetDB__(Targets) 155 139
Protozoadb_2010_08_(Protozoadb) 456 387
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 164 159
STRING_v9.0.5_(STRING) 5026 4406
Uniprot_2018_03_genome 62485 54891
NCBI_2017_08_genome 82849 73570
NCBI_viral_sequences_(Viral) 88 85
Protein_Data_Bank_(all_PDB_sequenc) 101 94

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