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Domain combinations for GTF2I-like repeat superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a GTF2I-like repeat domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   54 14
Pan_troglodytes_76_2.1.4   (Chimpanzee)   14 4
Gorilla_gorilla_76_3.1   (Western gorilla)   8 3
Pongo_abelii_76_2   (Sumatran orangutan)   19 5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9 5
Papio_anubis_76   (Olive baboon)   16 4
Macaca_mulatta_76_1   (Rhesus monkey)   25 5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   18 7
Otolemur_garnettii_76_3   (Small-eared galago)   12 3
Microcebus_murinus_76_1   (Gray mouse lemur)   9 3
Rattus_norvegicus_76_5.0   (Norway rat)   24 5
Mus_musculus_76_38   (House mouse)   120 25
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   9 2
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 3
Cavia_porcellus_76_3   (Domestic guinea pig)   17 5
Oryctolagus_cuniculus_76_2   (Rabbit)   18 4
Ochotona_princeps_76   (American pika)   8 2
Tupaia_belangeri_76   (Northern tree shrew)   6 2
Sus_scrofa_76_10.2   (Pig)   25 5
Bos_taurus_76_3.1   (Cattle)   13 3
Ovis_aries_76_3.1   (Sheep)   30 7
Vicugna_pacos_76_1   (Alpaca)   6 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   11 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   12 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   13 3
Canis_familiaris_76_3.1   (Dog)   18 4
Felis_catus_76_6.2   (Domestic cat)   12 3
Equus_caballus_76_2   (Horse)   36 7
Myotis_lucifugus_76_2.0   (Little brown bat)   13 3
Pteropus_vampyrus_76_1   (Large flying fox)   12 3
Sorex_araneus_76_1   (European shrew)   6 1
Erinaceus_europaeus_76   (Western European hedgehog)   3 1
Loxodonta_africana_76_3   (African savanna elephant)   18 4
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   25 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   10 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 1
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   10 4
Ornithorhynchus_anatinus_76_5   (Platypus)   11 2
Meleagris_gallopavo_76_2   (Turkey)   10 2
Gallus_gallus_76_4   (Chicken)   11 2
Anas_platyrhynchos_76_1.0   (Mallard)   11 2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   11 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   11 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   22 4
Anolis_carolinensis_76_2.0   (Green anole)   4 2
Xenopus_laevis_   (African clawed frog)   32 6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   15 4
Latimeria_chalumnae_76_1   (Coelacanth)   11 2
Lepisosteus_oculatus_76   (Spotted gar)   6 2
Gadus_morhua_76_1   (Atlantic cod)   5 1
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5 1
Takifugu_rubripes_76_4   (Torafugu)   25 6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5 1
Oryzias_latipes_76_1   (Japanese medaka)   5 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5 1
Poecilia_formosa_76   (Amazon molly)   5 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5 1
Astyanax_mexicanus_76   (Mexican tetra)   5 1
Danio_rerio_76_9   (Zebrafish)   12 4
Ciona_intestinalis_76   (Vase tunicate)   1 1
Capitella_sp._I_ 10 10
Amphimedon_queenslandica 1 1
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Galerina_marginata_v1.0 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   17 5

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   26 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   14 4
Gorilla_gorilla_69_3.1   (Western gorilla)   8 3
Pongo_abelii_69_2   (Sumatran orangutan)   14 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 3
Macaca_mulatta_69_1   (Rhesus monkey)   13 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10 4
Otolemur_garnettii_69_3   (Small-eared galago)   12 3
Microcebus_murinus_69_1   (Gray mouse lemur)   9 3
Rattus_norvegicus_69_3.4   (Norway rat)   14 3
Mus_musculus_69_38   (House mouse)   14 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9 2
Cavia_porcellus_69_3   (Domestic guinea pig)   16 4
Oryctolagus_cuniculus_69_2   (Rabbit)   13 3
Ochotona_princeps_69   (American pika)   8 2
Tupaia_belangeri_69   (Northern tree shrew)   6 2
Sus_scrofa_69_10.2   (Pig)   13 3
Bos_taurus_69_3.1   (Cattle)   13 3
Vicugna_pacos_69_1   (Alpaca)   6 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   11 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   12 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   13 3
Canis_familiaris_69_3.1   (Dog)   13 3
Felis_catus_69   (Domestic cat)   10 2
Equus_caballus_69_2   (Horse)   13 3
Myotis_lucifugus_69_2.0   (Little brown bat)   13 3
Pteropus_vampyrus_69_1   (Large flying fox)   12 3
Sorex_araneus_69_1   (European shrew)   6 1
Erinaceus_europaeus_69   (Western European hedgehog)   3 1
Loxodonta_africana_69_3   (African savanna elephant)   12 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   10 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   10 4
Ornithorhynchus_anatinus_69_5   (Platypus)   11 2
Meleagris_gallopavo_69_2   (Turkey)   10 2
Gallus_gallus_69_2   (Chicken)   11 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   11 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   11 2
Anolis_carolinensis_69_2.0   (Green anole)   3 2
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   10 2
Latimeria_chalumnae_69_1   (Coelacanth)   11 2
Gadus_morhua_69_1   (Atlantic cod)   5 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 1
Takifugu_rubripes_69_4   (Torafugu)   5 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 1
Oryzias_latipes_69_1   (Japanese medaka)   5 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5 1
Danio_rerio_69_9   (Zebrafish)   9 4
Ciona_intestinalis_69   (Vase tunicate)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   89 25
Homo_sapiens__(NCBI_version)   (Human)   49 10
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   14 3
Uniprot_2018_03_genome 2922 757
NCBI_2017_08_genome 9263 2016
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 30 30
Protein_Data_Bank_(all_PDB_sequenc) 10 10
TargetDB__(Targets) 34 18
PDB_chains_(SCOP_1.75)_(PDB) 1 1
STRING_v9.0.5_(STRING) 260 65

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