SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for BSD domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BSD domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   15 12
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4 3
Gorilla_gorilla_76_3.1   (Western gorilla)   7 5
Pongo_abelii_76_2   (Sumatran orangutan)   6 4
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 3
Papio_anubis_76   (Olive baboon)   7 5
Macaca_mulatta_76_1   (Rhesus monkey)   5 5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14 11
Otolemur_garnettii_76_3   (Small-eared galago)   4 3
Microcebus_murinus_76_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_76_5.0   (Norway rat)   4 3
Mus_musculus_76_38   (House mouse)   7 5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   5 4
Cavia_porcellus_76_3   (Domestic guinea pig)   4 3
Oryctolagus_cuniculus_76_2   (Rabbit)   5 4
Ochotona_princeps_76   (American pika)   3 3
Tupaia_belangeri_76   (Northern tree shrew)   3 3
Sus_scrofa_76_10.2   (Pig)   7 6
Bos_taurus_76_3.1   (Cattle)   4 3
Ovis_aries_76_3.1   (Sheep)   4 3
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   4 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   4 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   5 4
Canis_familiaris_76_3.1   (Dog)   6 5
Felis_catus_76_6.2   (Domestic cat)   4 3
Equus_caballus_76_2   (Horse)   5 4
Myotis_lucifugus_76_2.0   (Little brown bat)   4 3
Pteropus_vampyrus_76_1   (Large flying fox)   4 3
Sorex_araneus_76_1   (European shrew)   3 2
Erinaceus_europaeus_76   (Western European hedgehog)   3 2
Procavia_capensis_76_1   (Cape rock hyrax)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   4 3
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   5 4
Ornithorhynchus_anatinus_76_5   (Platypus)   4 3
Saccoglossus_kowalevskii_v3.0 5 4
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   4 3
Gallus_gallus_76_4   (Chicken)   4 3
Anas_platyrhynchos_76_1.0   (Mallard)   4 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4 3
Anolis_carolinensis_76_2.0   (Green anole)   4 3
Xenopus_laevis_   (African clawed frog)   14 12
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5 4
Latimeria_chalumnae_76_1   (Coelacanth)   4 3
Lepisosteus_oculatus_76   (Spotted gar)   5 5
Gadus_morhua_76_1   (Atlantic cod)   4 3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   4 3
Takifugu_rubripes_76_4   (Torafugu)   12 9
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 6
Oryzias_latipes_76_1   (Japanese medaka)   6 5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5 4
Poecilia_formosa_76   (Amazon molly)   5 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6 5
Astyanax_mexicanus_76   (Mexican tetra)   4 3
Danio_rerio_76_9   (Zebrafish)   8 5
Oikopleura_dioica 5 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5 3
Ciona_intestinalis_76   (Vase tunicate)   3 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   8 5
Adineta_vaga 9 9
Octopus_bimaculoides_280 6 5
Crassostrea_gigas_22   (Pacific oyster)   4 3
Lottia_gigantea_   (Owl limpet)   4 3
Helobdella_robusta_ 4 3
Capitella_sp._I_ 4 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 3
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 2
Linepithema_humile_v1.1   (Argentine ant)   4 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 2
Atta_cephalotes_v1.1 4 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 2
Lucilia_cuprina   (Australian sheep blowfly)   3 2
Drosophila_grimshawi_1.3 3 2
Drosophila_willistoni_1.3 3 2
Drosophila_pseudoobscura_2.13 3 2
Drosophila_persimilis_1.3 3 2
Drosophila_suzukii 3 2
Drosophila_yakuba_1.3 3 2
Drosophila_simulans_1.3 2 1
Drosophila_sechellia_1.3 2 1
Drosophila_melanogaster_76_5   (Fruit fly)   17 13
Drosophila_erecta_1.3 3 2
Drosophila_ananassae_1.3 3 2
Drosophila_virilis_1.2 3 2
Drosophila_mojavensis_1.3 3 2
Megaselia_scalaris_22 2 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7 6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 4
Anopheles_darlingi_22   (American malaria mosquito)   3 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 3
Tribolium_castaneum_3.0   (Red flour beetle)   4 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4 3
Acyrthosiphon_pisum_   (Pea aphid)   3 2
Rhodnius_prolixus_22 3 2
Daphnia_pulex_   (Common water flea)   6 4
Strigamia_maritima_22 4 3
Sarcoptes_scabiei 4 3
Tetranychus_urticae_   (Two-spotted spider mite)   4 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 4 3
Meloidogyne_incognita_   (Southern root-knot nematode)   5 5
Meloidogyne_hapla_ 4 3
Onchocerca_volvulus_22 4 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8 5
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 6 5
Caenorhabditis_remanei_ 4 3
Caenorhabditis_elegans_76_235   (Roundworm)   4 3
Caenorhabditis_briggsae_2 4 3
Trichinella_spiralis_22 4 3
Hymenolepis_microstoma_ 3 2
Echinococcus_multilocularis_ 3 2
Echinococcus_granulosus_ 3 2
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 3 2
Mnemiopsis_leidyi   (Sea walnut)   4 3
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 2
Hydra_vulgaris 5 4
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 4 3
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 4 3
Conidiobolus_coronatus_NRRL28638_v1.0 5 3
Mortierella_verticillata_NRRL_6337_ 4 3
Phycomyces_blakesleeanus_ 4 3
Rhizopus_oryzae_RA_99-880_ 4 4
Mucor_circinelloides_ 4 3
Rhizomucor_miehei_CAU432_ 4 3
Malassezia_globosa_CBS_7966_ 4 2
Sporisorium_reilianum_22 2 1
Ustilago_maydis_ 2 1
Mixia_osmundae_IAM_14324_v1.0 3 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 2 1
Sporobolomyces_roseus_IAM_13481_ 3 2
Microbotryum_violaceum_22 3 2
Wallemia_sebi_v1.0 2 1
Sphaerobolus_stellatus_v1.0 3 2
Piloderma_croceum_F_1598_v1.0 3 2
Serpula_lacrymans_var._lacrymans_S7.9_ 3 2
Coniophora_puteana 3 2
Hydnomerulius_pinastri_v2.0 3 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 3 2
Pisolithus_microcarpus_441_v1.0 3 2
Pisolithus_tinctorius_Marx_270_v1.0 3 2
Scleroderma_citrinum_Foug_A_v1.0 3 2
Coprinopsis_cinerea_okayama7_130_v3 3 2
Pleurotus_ostreatus_   (Oyster mushroom)   3 2
Amanita_thiersii_Skay4041_v1.0 3 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   3 2
Galerina_marginata_v1.0 3 2
Hebeloma_cylindrosporum_h7_v2.0 2 1
Laccaria_bicolor_S238N-H82_ 3 2
Agaricus_bisporus_var._bisporus_ 3 2
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2 1
Heterobasidion_annosum_ 3 2
Gloeophyllum_trabeumv1.0 3 2
Punctularia_strigosozonata_v1.0 3 2
Sebacina_vermifera_MAFF_305830_v1.0 2 1
Fomitiporia_mediterranea_v1.0 3 2
Tulasnella_calospora_AL13/4D_v1.0 3 2
Postia_placenta_ 5 4
Wolfiporia_cocos_MD-104_SS10__v1.0 3 2
Fomitopsis_pinicolav1.0 3 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 2
Dichomitus_squalens 3 2
Trametes_versicolor_v1.0 3 2
Tremella_mesenterica_   (Witches' butter)   3 2
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 2 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 2
Candida_dubliniensis_CD36_ 3 2
Candida_tropicalis_MYA-3404_ 3 2
Candida_parapsilosis_ 3 2
Candida_albicans_SC5314 3 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Pichia_stipitis_CBS_6054_ 3 2
Candida_guilliermondii_ATCC_6260_ 3 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 2
Debaromyces_hansenii 3 2
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 2 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 3 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 2
Vanderwaltozyma_polyspora_DSM_70294_ 3 2
Candida_glabrata_CBS138 3 2
Kluyveromyces_thermotolerans_CBS_6340 3 2
Lachancea_kluyveri_ 3 2
Kluyveromyces_waltii 3 2
Ashbya_gossypii_ATCC_10895_ 3 2
Zygosaccharomyces_rouxii_ 3 2
Saccharomyces_mikatae_MIT 2 1
Saccharomyces_paradoxus_MIT 3 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   3 2
Saccharomyces_bayanus_MIT 3 2
Kluyveromyces_lactis 3 2
Schizosaccharomyces_cryophilus_OY26_22 2 2
Schizosaccharomyces_octosporus_yFS286_ 2 2
Schizosaccharomyces_japonicus_yFS275_ 2 2
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 3 2
Allomyces_macrogynus_ATCC_38327_ 5 3
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Dictyostelium_discoideum 6 5
Dictyostelium_purpureum_ 6 5
Entamoeba_dispar_1.2 3 3
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 14 13
Pinus_taeda   (Loblolly pine)   2 2
Picea_abies   (Norway spruce)   3 3
Eucalyptus_grandis_v201   (Rose gum)   13 10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10 9
Gossypium_raimondii_v221 31 27
Citrus_clementina_v165 23 17
Citrus_sinensis_v154   (Sweet orange)   25 20
Thellungiella_halophila_v173 11 10
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11 10
Capsella_rubella_v183 10 9
Arabidopsis_lyrata_   (Lyrate rockcress)   10 8
Arabidopsis_thaliana_10   (Thale cress)   14 12
Carica_papaya_   (Papaya)   9 8
Medicago_truncatula_   (Barrel medic)   17 15
Phaseolus_vulgaris_v186   (French bean)   11 10
Glycine_max_v109   (Soybean)   23 19
Cucumis_sativus_v122   (Cucumber)   10 10
Fragaria_vesca_   (Wild strawberry)   10 9
Malus_domestica_v196   (Apple)   24 21
Prunus_persica_v139   (Peach)   13 10
Linum_usitatissimum_v200   (Flax)   15 13
Manihot_esculenta_v147   (Cassava)   15 14
Populus_trichocarpa_v156   (Black cottonwood)   18 16
Vitis_vinifera_   (Wine grape)   9 8
Mimulus_guttatus_v140   (Spotted monkey flower)   9 9
Solanum_lycopersicum_v.2.3   (Tomato)   12 11
Solanum_tuberosum_   (Potato)   12 12
Actinidia_chinensis_Hongyang_ 12 11
Aquilegia_coerulea_v195 16 13
Triticum_urartu_22 9 9
Triticum_aestivum_22   (Bread wheat)   33 29
Aegilops_tauschii_22 8 8
Brachypodium_distachyon_   (Stiff brome)   11 10
Oryza_barthii_22   (African wild rice)   10 10
Oryza_meridionalis_22 12 12
Oryza_glumaepatula_22 12 12
Oryza_glaberrima   (African rice)   11 10
Oryza_punctata_22 14 13
Oryza_nivara_22 14 14
Oryza_brachyantha_22   (Malo sina)   10 9
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   12 11
Oryza_sativa_v193   (Rice)   12 11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   12 11
Panicum_virgatum_v202   (Switchgrass)   17 16
Setaria_italica_v164   (Foxtail millet)   13 12
Zea_mays_subsp._mays_   (Maize)   15 13
Zea_mays_v181   (Maize)   17 15
Sorghum_bicolor_   (Sorghum)   10 9
Musa_balbisiana   (Balbis banana)   13 12
Musa_acuminata_22   (Wild Malaysian banana)   15 14
Amborella_trichopoda_22 7 6
Physcomitrella_patens 11 10
Coccomyxa_subellipsoidea_sp._C-169_v2 4 3
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 4 3
Chlorella_vulgaris_ 4 3
Volvox_carteri_f._nagariensis_ 4 3
Volvox_carteri_v199 4 3
Chlamydomonas_reinhardtii_4.0 4 3
Ostreococcus_sp._RCC809_ 3 2
Ostreococcus_lucimarinus_CCE9901_ 3 2
Ostreococcus_tauri_ 3 2
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Porphyridium_purpureum_02_2012 3 3
Thecamonas_trahens_ATCC_50062_ 3 2
Bigelowiella_natans_CCMP2755_22 8 7
Cyanophora_paradoxa_ 2 2
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 3 3
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 4 4
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 3 3
Pythium_irregulare_DAOM_BR486_22 3 3
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4 4
Phytophthora_sojae_1.1 3 3
Phytophthora_infestans_T30-4_ 5 5
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 3 3
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 2 2
Tetrahymena_thermophila_SB210_1_ 2 2
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 3 3
Naegleria_gruberi_ 4 3
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 13 12

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   12 9
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14 11
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   7 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 3
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Candida_albicans_WO-1_ 3 2
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 3 2
Saccharomyces_cerevisiae_FL100 3 2
Saccharomyces_cerevisiae_CLIB324 3 2
Saccharomyces_cerevisiae_CBS7960 3 2
Saccharomyces_cerevisiae_YJM269 3 2
Saccharomyces_cerevisiae_T7 3 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 2 1
Saccharomyces_cerevisiae_VL3 3 2
Saccharomyces_cerevisiae_Vin13 3 2
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 3 2
Saccharomyces_cerevisiae_Sigma1278b 3 2
Saccharomyces_cerevisiae_W303 3 2
Saccharomyces_cerevisiae_JAY291 3 2
Saccharomyces_cerevisiae_AWRI1631 3 2
Saccharomyces_cerevisiae_CLIB215 3 2
Saccharomyces_cerevisiae_YJM789_ 3 2
Saccharomyces_cerevisiae_YJM789 3 2
Saccharomyces_cerevisiae_RM11-1a 3 2
Saccharomyces_cerevisiae_RM11-1a_ 3 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3 2
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 4 3
Batrachochytrium_dendrobatidis_JAM81_ 4 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   10 9
Hordeum_vulgare_22   (Domesticated barley)   36 24
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 8
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4 3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4 3
Gorilla_gorilla_69_3.1   (Western gorilla)   4 3
Pongo_abelii_69_2   (Sumatran orangutan)   6 4
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4 3
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4 3
Otolemur_garnettii_69_3   (Small-eared galago)   4 3
Microcebus_murinus_69_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_69_3.4   (Norway rat)   4 3
Mus_musculus_69_38   (House mouse)   4 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4 3
Cavia_porcellus_69_3   (Domestic guinea pig)   4 3
Oryctolagus_cuniculus_69_2   (Rabbit)   5 4
Ochotona_princeps_69   (American pika)   3 3
Tupaia_belangeri_69   (Northern tree shrew)   3 3
Sus_scrofa_69_10.2   (Pig)   4 3
Bos_taurus_69_3.1   (Cattle)   4 3
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   4 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   4 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   4 3
Canis_familiaris_69_3.1   (Dog)   4 3
Felis_catus_69   (Domestic cat)   4 3
Equus_caballus_69_2   (Horse)   4 3
Myotis_lucifugus_69_2.0   (Little brown bat)   4 3
Pteropus_vampyrus_69_1   (Large flying fox)   4 3
Sorex_araneus_69_1   (European shrew)   3 2
Erinaceus_europaeus_69   (Western European hedgehog)   3 2
Procavia_capensis_69_1   (Cape rock hyrax)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   4 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   5 4
Ornithorhynchus_anatinus_69_5   (Platypus)   4 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   4 3
Gallus_gallus_69_2   (Chicken)   4 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4 3
Anolis_carolinensis_69_2.0   (Green anole)   4 3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   4 3
Latimeria_chalumnae_69_1   (Coelacanth)   4 3
Gadus_morhua_69_1   (Atlantic cod)   4 3
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4 3
Takifugu_rubripes_69_4   (Torafugu)   5 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 4
Oryzias_latipes_69_1   (Japanese medaka)   4 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   6 5
Danio_rerio_69_9   (Zebrafish)   6 4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 2
Ciona_intestinalis_69   (Vase tunicate)   3 2
Drosophila_melanogaster_69_5   (Fruit fly)   3 2
Caenorhabditis_elegans_69_215   (Roundworm)   4 3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3 2
Arabidopsis_thaliana_10   (Thale cress)   13 11

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   16 13
Homo_sapiens__(NCBI_version)   (Human)   9 7
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   4 3
Loa_loa_v3.3_(Request)   (Eye worm)   5 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 2
Moniliophthora_perniciosa_FA553__(Genome_survey) 2 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 6 5
Malus_x_domestica_(Duplicate)   (Apple)   24 21
Ricinus_communis__(Early_assembly)   (Castor bean)   10 9
Nicotiana_benthamiana_0.4.4_(Early_draft) 17 16
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   12 11
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12 11
Phoenix_dactylifera__(Early_draft)   (Date palm)   6 5
Protein_Data_Bank_(all_PDB_sequenc) 6 4
PDB_chains_(SCOP_1.75)_(PDB) 2 2
TargetDB__(Targets) 30 22
Protozoadb_2010_08_(Protozoadb) 51 51
STRING_v9.0.5_(STRING) 421 342
NCBI_2017_08_genome 4843 3936
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5 5
Uniprot_2018_03_genome 5555 4594

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