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Domain combinations for RUN domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RUN domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   82 77
Pan_troglodytes_76_2.1.4   (Chimpanzee)   23 21
Gorilla_gorilla_76_3.1   (Western gorilla)   30 28
Pongo_abelii_76_2   (Sumatran orangutan)   23 20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   22 19
Papio_anubis_76   (Olive baboon)   22 20
Macaca_mulatta_76_1   (Rhesus monkey)   27 24
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   46 43
Otolemur_garnettii_76_3   (Small-eared galago)   21 19
Microcebus_murinus_76_1   (Gray mouse lemur)   20 17
Rattus_norvegicus_76_5.0   (Norway rat)   25 23
Mus_musculus_76_38   (House mouse)   48 45
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   18 16
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   20 18
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   23 20
Cavia_porcellus_76_3   (Domestic guinea pig)   19 18
Oryctolagus_cuniculus_76_2   (Rabbit)   21 19
Ochotona_princeps_76   (American pika)   19 17
Tupaia_belangeri_76   (Northern tree shrew)   17 14
Sus_scrofa_76_10.2   (Pig)   24 22
Bos_taurus_76_3.1   (Cattle)   26 25
Ovis_aries_76_3.1   (Sheep)   24 21
Vicugna_pacos_76_1   (Alpaca)   12 10
Tursiops_truncatus_76_1   (Bottlenose dolphin)   21 19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   19 17
Ailuropoda_melanoleuca_76_1   (Giant panda)   21 19
Canis_familiaris_76_3.1   (Dog)   34 30
Felis_catus_76_6.2   (Domestic cat)   18 16
Equus_caballus_76_2   (Horse)   24 22
Myotis_lucifugus_76_2.0   (Little brown bat)   21 19
Pteropus_vampyrus_76_1   (Large flying fox)   20 18
Sorex_araneus_76_1   (European shrew)   13 13
Erinaceus_europaeus_76   (Western European hedgehog)   13 12
Procavia_capensis_76_1   (Cape rock hyrax)   20 18
Loxodonta_africana_76_3   (African savanna elephant)   29 27
Echinops_telfairi_76   (Small Madagascar hedgehog)   17 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   30 28
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   13 11
Macropus_eugenii_76_1.0   (Tammar wallaby)   20 17
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   24 22
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   22 20
Ornithorhynchus_anatinus_76_5   (Platypus)   25 24
Saccoglossus_kowalevskii_v3.0 21 18
Petromyzon_marinus_76_7.0   (Sea lamprey)   14 13
Meleagris_gallopavo_76_2   (Turkey)   19 17
Gallus_gallus_76_4   (Chicken)   20 18
Anas_platyrhynchos_76_1.0   (Mallard)   18 16
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   25 23
Ficedula_albicollis_76_1.0   (Collared flycatcher)   21 19
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   18 16
Anolis_carolinensis_76_2.0   (Green anole)   21 20
Xenopus_laevis_   (African clawed frog)   9 9
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   26 23
Latimeria_chalumnae_76_1   (Coelacanth)   19 18
Lepisosteus_oculatus_76   (Spotted gar)   26 24
Gadus_morhua_76_1   (Atlantic cod)   24 21
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   28 27
Takifugu_rubripes_76_4   (Torafugu)   72 65
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   30 26
Oryzias_latipes_76_1   (Japanese medaka)   26 23
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   24 22
Poecilia_formosa_76   (Amazon molly)   23 21
Oreochromis_niloticus_76_1.0   (Nile tilapia)   41 35
Astyanax_mexicanus_76   (Mexican tetra)   22 20
Danio_rerio_76_9   (Zebrafish)   41 37
Oikopleura_dioica 7 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   17 17
Ciona_intestinalis_76   (Vase tunicate)   9 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   15 14
Adineta_vaga 31 29
Octopus_bimaculoides_280 27 24
Crassostrea_gigas_22   (Pacific oyster)   11 10
Lottia_gigantea_   (Owl limpet)   13 12
Helobdella_robusta_ 10 9
Capitella_sp._I_ 15 14
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9 8
Heliconius_melpomene_   (Postman butterfly)   9 8
Bombyx_mori_   (Domestic silkworm)   9 8
Nasonia_vitripennis_   (Jewel wasp)   6 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   21 17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   11 10
Linepithema_humile_v1.1   (Argentine ant)   10 9
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6 6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   11 10
Atta_cephalotes_v1.1 11 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   11 10
Lucilia_cuprina   (Australian sheep blowfly)   10 9
Drosophila_grimshawi_1.3 10 9
Drosophila_willistoni_1.3 10 9
Drosophila_pseudoobscura_2.13 13 12
Drosophila_persimilis_1.3 10 9
Drosophila_suzukii 11 10
Drosophila_yakuba_1.3 10 9
Drosophila_simulans_1.3 9 8
Drosophila_sechellia_1.3 9 8
Drosophila_melanogaster_76_5   (Fruit fly)   15 13
Drosophila_erecta_1.3 10 9
Drosophila_ananassae_1.3 11 10
Drosophila_virilis_1.2 10 9
Drosophila_mojavensis_1.3 10 9
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8 7
Anopheles_darlingi_22   (American malaria mosquito)   6 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   7 6
Tribolium_castaneum_3.0   (Red flour beetle)   10 9
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   12 11
Acyrthosiphon_pisum_   (Pea aphid)   5 5
Rhodnius_prolixus_22 11 10
Daphnia_pulex_   (Common water flea)   9 8
Strigamia_maritima_22 12 11
Sarcoptes_scabiei 7 6
Tetranychus_urticae_   (Two-spotted spider mite)   5 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7 7
Pristionchus_pacificus_ 5 4
Meloidogyne_incognita_   (Southern root-knot nematode)   8 7
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 8 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   14 13
Caenorhabditis_japonica_ 5 4
Caenorhabditis_brenneri_ 7 7
Caenorhabditis_remanei_ 8 7
Caenorhabditis_elegans_76_235   (Roundworm)   8 7
Caenorhabditis_briggsae_2 7 6
Trichinella_spiralis_22 6 6
Hymenolepis_microstoma_ 9 8
Echinococcus_multilocularis_ 9 8
Echinococcus_granulosus_ 8 7
Taenia_solium_   (Pork tapeworm)   9 8
Schistosoma_mansoni_ 13 10
Mnemiopsis_leidyi   (Sea walnut)   9 8
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 10 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   13 12
Hydra_vulgaris 10 10
Amphimedon_queenslandica 11 10
Trichoplax_adhaerens_ 9 9
Proterospongia_sp._ATCC_50818_ 10 9
Monosiga_brevicollis_ 7 7
Sphaeroforma_arctica_JP610_ 5 5
Capsaspora_owczarzaki_ATCC_30864_ 12 11
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2 1
Micromonas_sp._RCC299_ 1 1
Thecamonas_trahens_ATCC_50062_ 11 11
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 4 4
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 5 5
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 4 4
Pythium_irregulare_DAOM_BR486_22 4 4
Pythium_vexans_DAOM_BR484_22 4 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 3
Phytophthora_sojae_1.1 3 3
Phytophthora_infestans_T30-4_ 3 3
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 2 2
Paramecium_tetraurelia_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 4 4
Guillardia_theta_CCMP2712_v1.0_ 1 1
Emiliania_huxleyi_CCMP1516_ 4 4

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   34 30
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14 12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9 8
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7 6
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   23 21
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22 20
Gorilla_gorilla_69_3.1   (Western gorilla)   23 21
Pongo_abelii_69_2   (Sumatran orangutan)   20 18
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   19 17
Macaca_mulatta_69_1   (Rhesus monkey)   18 16
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21 19
Otolemur_garnettii_69_3   (Small-eared galago)   20 18
Microcebus_murinus_69_1   (Gray mouse lemur)   20 17
Rattus_norvegicus_69_3.4   (Norway rat)   18 17
Mus_musculus_69_38   (House mouse)   21 19
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   18 16
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   19 17
Cavia_porcellus_69_3   (Domestic guinea pig)   19 18
Oryctolagus_cuniculus_69_2   (Rabbit)   21 19
Ochotona_princeps_69   (American pika)   19 17
Tupaia_belangeri_69   (Northern tree shrew)   17 14
Sus_scrofa_69_10.2   (Pig)   20 18
Bos_taurus_69_3.1   (Cattle)   20 19
Vicugna_pacos_69_1   (Alpaca)   12 10
Tursiops_truncatus_69_1   (Bottlenose dolphin)   21 19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   19 17
Ailuropoda_melanoleuca_69_1   (Giant panda)   21 19
Canis_familiaris_69_3.1   (Dog)   21 19
Felis_catus_69   (Domestic cat)   16 14
Equus_caballus_69_2   (Horse)   21 19
Myotis_lucifugus_69_2.0   (Little brown bat)   21 19
Pteropus_vampyrus_69_1   (Large flying fox)   20 18
Sorex_araneus_69_1   (European shrew)   13 13
Erinaceus_europaeus_69   (Western European hedgehog)   13 12
Procavia_capensis_69_1   (Cape rock hyrax)   20 18
Loxodonta_africana_69_3   (African savanna elephant)   21 19
Echinops_telfairi_69   (Small Madagascar hedgehog)   17 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   17 15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   13 11
Macropus_eugenii_69_1.0   (Tammar wallaby)   20 17
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   20 18
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   19 17
Ornithorhynchus_anatinus_69_5   (Platypus)   21 20
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 7
Meleagris_gallopavo_69_2   (Turkey)   17 15
Gallus_gallus_69_2   (Chicken)   18 16
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   23 21
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17 15
Anolis_carolinensis_69_2.0   (Green anole)   19 18
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   18 16
Latimeria_chalumnae_69_1   (Coelacanth)   17 16
Gadus_morhua_69_1   (Atlantic cod)   24 21
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   22 21
Takifugu_rubripes_69_4   (Torafugu)   26 23
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   23 20
Oryzias_latipes_69_1   (Japanese medaka)   21 18
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   24 22
Oreochromis_niloticus_69_1.0   (Nile tilapia)   25 22
Danio_rerio_69_9   (Zebrafish)   25 23
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 7
Ciona_intestinalis_69   (Vase tunicate)   9 9
Drosophila_melanogaster_69_5   (Fruit fly)   10 9
Caenorhabditis_elegans_69_215   (Roundworm)   7 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   85 79
Homo_sapiens__(NCBI_version)   (Human)   39 37
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   21 19
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   10 7
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   9 8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   8 7
STRING_v9.0.5_(STRING) 759 692
Uniprot_2018_03_genome 8028 7280
TargetDB__(Targets) 22 20
NCBI_2017_08_genome 15193 13864
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 12 12
Protein_Data_Bank_(all_PDB_sequenc) 8 8
PDB_chains_(SCOP_1.75)_(PDB) 1 1

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