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Domain combinations for Hermes dimerisation domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Hermes dimerisation domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   9 9
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_76_3.1   (Western gorilla)   4 4
Pongo_abelii_76_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 3
Papio_anubis_76   (Olive baboon)   4 4
Macaca_mulatta_76_1   (Rhesus monkey)   6 6
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2 2
Otolemur_garnettii_76_3   (Small-eared galago)   3 3
Microcebus_murinus_76_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_76_5.0   (Norway rat)   3 3
Mus_musculus_76_38   (House mouse)   6 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_76_2   (Rabbit)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   2 2
Bos_taurus_76_3.1   (Cattle)   3 3
Ovis_aries_76_3.1   (Sheep)   6 6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 3
Canis_familiaris_76_3.1   (Dog)   4 4
Felis_catus_76_6.2   (Domestic cat)   4 4
Equus_caballus_76_2   (Horse)   5 5
Myotis_lucifugus_76_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   1 1
Loxodonta_africana_76_3   (African savanna elephant)   5 5
Echinops_telfairi_76   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   4 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_76_5   (Platypus)   3 3
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   2 2
Gallus_gallus_76_4   (Chicken)   3 3
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_76_2.0   (Green anole)   12 12
Xenopus_laevis_   (African clawed frog)   1 1
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_76_1   (Coelacanth)   44 44
Lepisosteus_oculatus_76   (Spotted gar)   7 7
Gadus_morhua_76_1   (Atlantic cod)   22 22
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_76_4   (Torafugu)   6 6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   9 9
Oryzias_latipes_76_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4 4
Poecilia_formosa_76   (Amazon molly)   6 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   34 34
Astyanax_mexicanus_76   (Mexican tetra)   12 12
Danio_rerio_76_9   (Zebrafish)   13 13
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_76   (Vase tunicate)   3 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   7 7
Adineta_vaga 4 4
Octopus_bimaculoides_280 3 3
Crassostrea_gigas_22   (Pacific oyster)   1 1
Helobdella_robusta_ 6 6
Capitella_sp._I_ 1 1
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9 9
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   14 14
Lucilia_cuprina   (Australian sheep blowfly)   5 5
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 1 1
Drosophila_suzukii 1 1
Drosophila_yakuba_1.3 2 2
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 4 4
Megaselia_scalaris_22 1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   4 4
Acyrthosiphon_pisum_   (Pea aphid)   7 7
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   4 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4 4
Pristionchus_pacificus_ 1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   10 10
Meloidogyne_hapla_ 2 2
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 4 4
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Thelohanellus_kitauei 1 1
Hydra_vulgaris 75 75
Amphimedon_queenslandica 80 80
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Phycomyces_blakesleeanus_ 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 8 8
Sphaerobolus_stellatus_v1.0 5 5
Piloderma_croceum_F_1598_v1.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 7 7
Pisolithus_microcarpus_441_v1.0 4 4
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Scleroderma_citrinum_Foug_A_v1.0 19 19
Amanita_muscaria_Koide_v1.0   (Fly agaric)   18 18
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 5 5
Agaricus_bisporus_var._bisporus_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Fomitopsis_pinicolav1.0 9 9
Fomitopsis_pinicola_FP-58527_SS1_v3.0 9 9
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 3 3
Chaetomium_globosum_CBS_148.51_ 3 3
Mycosphaerella_graminicola_IPO323_ 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   21 21
Gossypium_raimondii_v221 10 10
Citrus_clementina_v165 3 3
Capsella_rubella_v183 1 1
Medicago_truncatula_   (Barrel medic)   5 5
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   2 1
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   6 6
Malus_domestica_v196   (Apple)   6 6
Prunus_persica_v139   (Peach)   38 38
Populus_trichocarpa_v156   (Black cottonwood)   26 26
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   6 6
Actinidia_chinensis_Hongyang_ 12 12
Aquilegia_coerulea_v195 3 3
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   1 1
Brachypodium_distachyon_   (Stiff brome)   3 3
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5 5
Oryza_sativa_v193   (Rice)   6 6
Panicum_virgatum_v202   (Switchgrass)   3 3
Sorghum_bicolor_   (Sorghum)   2 2
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Perkinsus_marinus_ATCC_50983_ 5 5

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11 11
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 8
Hordeum_vulgare_22   (Domesticated barley)   3 3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   7 7

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4 4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_69_3.1   (Western gorilla)   4 4
Pongo_abelii_69_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 3
Macaca_mulatta_69_1   (Rhesus monkey)   4 4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1 1
Otolemur_garnettii_69_3   (Small-eared galago)   3 3
Microcebus_murinus_69_1   (Gray mouse lemur)   2 2
Rattus_norvegicus_69_3.4   (Norway rat)   2 2
Mus_musculus_69_38   (House mouse)   3 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   2 2
Oryctolagus_cuniculus_69_2   (Rabbit)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   2 2
Bos_taurus_69_3.1   (Cattle)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   2 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   3 3
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   4 4
Myotis_lucifugus_69_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   1 1
Loxodonta_africana_69_3   (African savanna elephant)   4 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   2 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_69_2.0   (Green anole)   11 11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9 9
Latimeria_chalumnae_69_1   (Coelacanth)   42 42
Gadus_morhua_69_1   (Atlantic cod)   20 20
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_69_4   (Torafugu)   3 3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   8 8
Oryzias_latipes_69_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   29 29
Danio_rerio_69_9   (Zebrafish)   12 12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_69   (Vase tunicate)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   8 8
Homo_sapiens__(NCBI_version)   (Human)   6 6
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   2 2
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   6 6
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 8 8
STRING_v9.0.5_(STRING) 191 191
Uniprot_2018_03_genome 3066 3060
NCBI_2017_08_genome 3663 3661
PDB_chains_(SCOP_1.75)_(PDB) 2 2
TargetDB__(Targets) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 11 11

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