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Domain combinations for CalX-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CalX-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   119 33
Pan_troglodytes_76_2.1.4   (Chimpanzee)   59 9
Gorilla_gorilla_76_3.1   (Western gorilla)   97 13
Pongo_abelii_76_2   (Sumatran orangutan)   55 9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   59 9
Papio_anubis_76   (Olive baboon)   64 10
Macaca_mulatta_76_1   (Rhesus monkey)   85 19
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   110 26
Otolemur_garnettii_76_3   (Small-eared galago)   54 8
Microcebus_murinus_76_1   (Gray mouse lemur)   41 8
Rattus_norvegicus_76_5.0   (Norway rat)   51 17
Mus_musculus_76_38   (House mouse)   110 25
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   51 8
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   19 8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   44 11
Cavia_porcellus_76_3   (Domestic guinea pig)   59 10
Oryctolagus_cuniculus_76_2   (Rabbit)   56 10
Ochotona_princeps_76   (American pika)   46 8
Tupaia_belangeri_76   (Northern tree shrew)   44 7
Sus_scrofa_76_10.2   (Pig)   23 9
Bos_taurus_76_3.1   (Cattle)   56 9
Ovis_aries_76_3.1   (Sheep)   67 12
Vicugna_pacos_76_1   (Alpaca)   54 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   55 8
Mustela_putorius_furo_76_1.0   (Domestic ferret)   55 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   55 8
Canis_familiaris_76_3.1   (Dog)   66 10
Felis_catus_76_6.2   (Domestic cat)   61 10
Equus_caballus_76_2   (Horse)   59 11
Myotis_lucifugus_76_2.0   (Little brown bat)   54 7
Pteropus_vampyrus_76_1   (Large flying fox)   53 8
Sorex_araneus_76_1   (European shrew)   44 7
Erinaceus_europaeus_76   (Western European hedgehog)   32 6
Procavia_capensis_76_1   (Cape rock hyrax)   42 8
Loxodonta_africana_76_3   (African savanna elephant)   86 9
Echinops_telfairi_76   (Small Madagascar hedgehog)   45 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   56 9
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   41 5
Macropus_eugenii_76_1.0   (Tammar wallaby)   51 9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   29 12
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   57 8
Ornithorhynchus_anatinus_76_5   (Platypus)   58 9
Saccoglossus_kowalevskii_v3.0 67 15
Petromyzon_marinus_76_7.0   (Sea lamprey)   53 6
Meleagris_gallopavo_76_2   (Turkey)   18 6
Gallus_gallus_76_4   (Chicken)   54 7
Anas_platyrhynchos_76_1.0   (Mallard)   55 8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   54 7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   56 8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   44 12
Anolis_carolinensis_76_2.0   (Green anole)   54 10
Xenopus_laevis_   (African clawed frog)   10 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   63 12
Latimeria_chalumnae_76_1   (Coelacanth)   64 12
Lepisosteus_oculatus_76   (Spotted gar)   113 15
Gadus_morhua_76_1   (Atlantic cod)   67 16
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   50 20
Takifugu_rubripes_76_4   (Torafugu)   271 66
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   114 20
Oryzias_latipes_76_1   (Japanese medaka)   71 14
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   68 15
Poecilia_formosa_76   (Amazon molly)   72 13
Oreochromis_niloticus_76_1.0   (Nile tilapia)   87 21
Astyanax_mexicanus_76   (Mexican tetra)   71 25
Danio_rerio_76_9   (Zebrafish)   105 25
Oikopleura_dioica 31 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   62 25
Ciona_intestinalis_76   (Vase tunicate)   23 10
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   60 11
Adineta_vaga 16 8
Octopus_bimaculoides_280 18 9
Crassostrea_gigas_22   (Pacific oyster)   69 13
Lottia_gigantea_   (Owl limpet)   40 9
Helobdella_robusta_ 3 2
Capitella_sp._I_ 31 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 2
Heliconius_melpomene_   (Postman butterfly)   3 2
Bombyx_mori_   (Domestic silkworm)   2 1
Nasonia_vitripennis_   (Jewel wasp)   4 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   12 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 1
Linepithema_humile_v1.1   (Argentine ant)   2 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 1
Atta_cephalotes_v1.1 2 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 1
Lucilia_cuprina   (Australian sheep blowfly)   2 1
Drosophila_grimshawi_1.3 2 1
Drosophila_willistoni_1.3 2 1
Drosophila_pseudoobscura_2.13 2 1
Drosophila_persimilis_1.3 2 1
Drosophila_suzukii 6 2
Drosophila_yakuba_1.3 2 1
Drosophila_simulans_1.3 2 1
Drosophila_sechellia_1.3 2 1
Drosophila_melanogaster_76_5   (Fruit fly)   14 7
Drosophila_erecta_1.3 2 1
Drosophila_ananassae_1.3 2 1
Drosophila_virilis_1.2 2 1
Drosophila_mojavensis_1.3 2 1
Megaselia_scalaris_22 2 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 1
Anopheles_darlingi_22   (American malaria mosquito)   2 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 1
Tribolium_castaneum_3.0   (Red flour beetle)   2 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4 2
Acyrthosiphon_pisum_   (Pea aphid)   2 1
Rhodnius_prolixus_22 3 3
Daphnia_pulex_   (Common water flea)   13 7
Strigamia_maritima_22 5 3
Sarcoptes_scabiei 4 2
Tetranychus_urticae_   (Two-spotted spider mite)   2 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 3
Pristionchus_pacificus_ 9 5
Meloidogyne_incognita_   (Southern root-knot nematode)   2 1
Onchocerca_volvulus_22 4 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 1
Caenorhabditis_japonica_ 6 3
Caenorhabditis_brenneri_ 4 2
Caenorhabditis_remanei_ 6 3
Caenorhabditis_elegans_76_235   (Roundworm)   13 7
Caenorhabditis_briggsae_2 6 3
Trichinella_spiralis_22 4 2
Hymenolepis_microstoma_ 3 2
Echinococcus_multilocularis_ 2 1
Echinococcus_granulosus_ 2 1
Taenia_solium_   (Pork tapeworm)   2 1
Schistosoma_mansoni_ 3 2
Mnemiopsis_leidyi   (Sea walnut)   4 2
Acropora_digitifera_v1.0 47 13
Nematostella_vectensis_1.0   (Starlet sea anemone)   175 33
Hydra_vulgaris 27 5
Amphimedon_queenslandica 260 79
Trichoplax_adhaerens_ 6 3
Proterospongia_sp._ATCC_50818_ 89 6
Monosiga_brevicollis_ 88 7
Capsaspora_owczarzaki_ATCC_30864_ 119 18
Chlamydomonas_reinhardtii_4.0 2 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 2 1
Micromonas_pusilla_CCMP1545_v3.0 2 1
Thecamonas_trahens_ATCC_50062_ 56 12
Bigelowiella_natans_CCMP2755_22 3 3
Ectocarpus_siliculosus 5 4
Aureococcus_anophagefferens_ 4 3
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 13 6
Pythium_arrhenomanes_ATCC_12531_22 19 8
Pythium_ultimum_v1.7-2 18 9
Pythium_aphanidermatum_DAOM_BR444_22 17 10
Pythium_irregulare_DAOM_BR486_22 20 8
Pythium_vexans_DAOM_BR484_22 12 6
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 3
Phytophthora_sojae_1.1 5 4
Phytophthora_infestans_T30-4_ 13 6
Phytophthora_capsici_ 5 4
Thalassiosira_pseudonana_CCMP1335 2 1
Perkinsus_marinus_ATCC_50983_ 4 2
Symbiodinium_minutum_clade_B1_v1.2 33 29
Trichomonas_vaginalis_ 4 2
Guillardia_theta_CCMP2712_v1.0_ 7 4
Emiliania_huxleyi_CCMP1516_ 2 1
Pseudanabaena_sp._PCC_7367 14 7
Acaryochloris_marina_MBIC11017 10 4
Synechocystis_sp._PCC_6803 5 5
Synechococcus_sp._PCC_7502 4 2
Synechococcus_sp._PCC_6312 6 3
Synechococcus_sp._CC9311 7 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 45 13
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 6 1
Gloeocapsa_sp._PCC_7428 5 2
Halothece_sp._PCC_7418 6 5
Microcystis_aeruginosa_NIES-843 45 15
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 15 8
Calothrix_sp._PCC_7507 1 1
Anabaena_variabilis_ATCC_29413 6 3
Nostoc_sp._PCC_7107 5 3
Nostoc_punctiforme_PCC_73102 7 4
Nostoc_sp._PCC_7120 18 6
Nostoc_sp._PCC_7524 12 9
Anabaena_sp._90 12 9
Conexibacter_woesei_DSM_14684 6 5
Ilumatobacter_coccineus 2 2
Kineococcus_radiotolerans_SRS30216 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinosynnema_mirum_DSM_43827 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 4 3
Nocardioides_sp._JS614 1 1
Salinispora_arenicola_CNS-205 4 3
Salinispora_tropica_CNB-440 2 2
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 5 1
Actinoplanes_sp._SE50/110 6 2
Actinoplanes_missouriensis_431 5 1
Mycobacterium_vanbaalenii_PYR-1 6 1
Mycobacterium_gilvum_PYR-GCK 6 1
Cellulomonas_fimi_ATCC_484 2 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 2 1
Herpetosiphon_aurantiacus_DSM_785 12 7
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 7 3
Chloroflexus_sp._Y-400-fl 7 2
Chloroflexus_aggregans_DSM_9485 5 2
Chloroflexus_aurantiacus_J-10-fl 7 2
Clostridium_cellulolyticum_H10 8 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Clostridium_sp._BNL1100 8 1
Clostridium_perfringens_ATCC_13124 1 1
Streptococcus_sp._I-P16 1 1
Streptococcus_sp._I-G2 1 1
Streptococcus_parasanguinis_ATCC_15912 1 1
Streptococcus_oralis_Uo5 2 2
Paenibacillus_mucilaginosus_3016 4 1
Chlorobium_chlorochromatii_CaD3 6 2
Haliscomenobacter_hydrossis_DSM_1100 14 3
Saprospira_grandis_str._Lewin 2 2
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 32 3
Salinibacter_ruber_M8 2 2
Flexibacter_litoralis_DSM_6794 1 1
Marivirga_tractuosa_DSM_4126 3 2
Fibrella_aestuarina 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 3 3
Tannerella_forsythia_ATCC_43037 1 1
Paludibacter_propionicigenes_WB4 1 1
Odoribacter_splanchnicus_DSM_20712 1 1
Prevotella_melaninogenica_ATCC_25845 1 1
Alistipes_finegoldii_DSM_17242 1 1
Bacteroides_helcogenes_P_36-108 3 2
Bacteroides_thetaiotaomicron_VPI-5482 1 1
Bacteroides_fragilis_YCH46 2 1
Pedobacter_saltans_DSM_12145 46 1
Solitalea_canadensis_DSM_3403 43 5
Pedobacter_heparinus_DSM_2366 1 1
Fluviicola_taffensis_DSM_16823 5 5
Owenweeksia_hongkongensis_DSM_17368 1 1
Zunongwangia_profunda_SM-A87 1 1
Krokinobacter_sp._4H-3-7-5 23 1
Lacinutrix_sp._5H-3-7-4 3 3
Maribacter_sp._HTCC2170 4 2
Robiginitalea_biformata_HTCC2501 10 4
Croceibacter_atlanticus_HTCC2559 4 4
Zobellia_galactanivorans 5 3
Muricauda_ruestringensis_DSM_13258 6 2
Cellulophaga_algicola_DSM_14237 3 2
Cellulophaga_lytica_DSM_7489 3 2
Polaribacter_sp._MED152 4 2
Flavobacterium_indicum_GPTSA100-9 2 2
Flavobacterium_psychrophilum_JIP02/86 16 3
Isosphaera_pallida_ATCC_43644 23 6
Rhodopirellula_baltica_SH_1 39 7
Pirellula_staleyi_DSM_6068 6 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Candidatus_Nitrospira_defluvii 1 1
Bdellovibrio_bacteriovorus_HD100 8 6
Arcobacter_sp._L 7 2
Arcobacter_butzleri_RM4018 2 1
Campylobacter_hominis_ATCC_BAA-381 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 10 4
Sulfuricurvum_kujiense_DSM_16994 1 1
Sulfurimonas_denitrificans_DSM_1251 1 1
Desulfobacca_acetoxidans_DSM_11109 2 2
Syntrophobacter_fumaroxidans_MPOB 3 3
Desulfobulbus_propionicus_DSM_2032 5 1
Geobacter_sulfurreducens_KN400 37 1
Pelobacter_carbinolicus_DSM_2380 4 1
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 9 2
Azoarcus_sp._KH32C 1 1
Azoarcus_sp._BH72 1 1
Laribacter_hongkongensis_HLHK9 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
beta_proteobacterium_CB 2 1
Leptothrix_cholodnii_SP-6 7 3
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 1 1
Acidovorax_sp._KKS102 9 3
Methylotenera_versatilis_301 2 1
Phenylobacterium_zucineum_HLK1 2 1
Sphingobium_japonicum_UT26S 1 1
Sphingobium_chlorophenolicum_L-1 1 1
Pseudovibrio_sp._FO-BEG1 1 1
Rhodobacter_sphaeroides_ATCC_17029 6 1
Azospirillum_lipoferum_4B 2 2
Azospirillum_sp._B510 2 2
Azospirillum_brasilense_Sp245 12 6
Azorhizobium_caulinodans_ORS_571 8 1
Methylobacterium_chloromethanicum_CM4 2 1
Methylobacterium_extorquens_AM1 2 1
Bradyrhizobium_japonicum_USDA_110 5 1
Saccharophagus_degradans_2-40 2 2
Teredinibacter_turnerae_T7901 3 3
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 3 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 3 2
Vibrio_sp._Ex25 16 3
Vibrio_harveyi_ATCC_BAA-1116 7 1
Vibrio_parahaemolyticus_RIMD_2210633 14 2
Vibrio_splendidus_LGP32 6 1
Vibrio_cholerae_O395 3 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 3 2
Shewanella_loihica_PV-4 2 2
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 5 4
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 6 5
Shewanella_amazonensis_SB2B 2 1
Shewanella_violacea_DSS12 2 2
Shewanella_putrefaciens_CN-32 1 1
Colwellia_psychrerythraea_34H 1 1
Glaciecola_sp._4H-3-7+YE-5 6 3
Glaciecola_nitratireducens_FR1064 2 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 5 5
Marinomonas_sp._MWYL1 5 1
Marinomonas_mediterranea_MMB-1 1 1
Methylococcus_capsulatus_str._Bath 1 1
Dichelobacter_nodosus_VCS1703A 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 1
Xanthomonas_campestris_pv._campestris_str._B100 3 2
Thiocystis_violascens_DSM_198 3 2
Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_fulva_12-X 15 1
Pseudomonas_putida_F1 8 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._PRwf-1 19 2
Methanocella_conradii_HZ254 2 1
Methanocella_paludicola_SANAE 18 6

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   72 18
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   13 7
Chamaesiphon_minutus_PCC_6605 21 3
Synechocystis_sp._PCC_6803_substr._PCC-P 4 4
Synechocystis_sp._PCC_6803_substr._PCC-N 4 4
Synechocystis_sp._PCC_6803_substr._GT-I 4 4
Synechocystis_sp._PCC_6803 5 5
Cyanobium_gracile_PCC_6307 15 3
Dactylococcopsis_salina_PCC_8305 5 3
Synechococcus_sp._WH_8102 2 2
Synechococcus_sp._WH_7803 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 16 8
Oscillatoria_acuminata_PCC_6304 32 9
Arthrospira_platensis_NIES-39 43 11
Cyanothece_sp._PCC_7822 25 10
Cyanothece_sp._PCC_7424 9 2
Cyanothece_sp._ATCC_51142 28 7
Cyanothece_sp._PCC_8801 6 1
Cyanobacterium_aponinum_PCC_10605 12 6
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Stanieria_cyanosphaera_PCC_7437 5 3
Calothrix_parietina_Calothrix_sp._PCC_6303 6 3
Cylindrospermum_stagnale_PCC_7417 2 2
Anabaena_cylindrica_PCC_7122 30 11
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 2 2
Actinoplanes_friuliensis_DSM_7358 6 2
Mycobacterium_gilvum_Spyr1 6 1
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Streptococcus_parasanguinis_FW213 1 1
Streptococcus_pneumoniae_JJA 1 1
Paenibacillus_mucilaginosus_KNP414 4 1
Paenibacillus_mucilaginosus_K02 4 1
Salinibacter_ruber_DSM_13855 1 1
Echinicola_vietnamensis_DSM_17526 2 1
Bacteroides_xylanisolvens_XB1A 2 2
Bacteroides_fragilis_638R 2 1
Bacteroides_fragilis_NCTC_9343 2 1
Nonlabens_dokdonensis_DSW-6 56 3
Psychroflexus_torquis_ATCC_700755 5 3
Singulisphaera_acidiphila_DSM_18658 11 6
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Bdellovibrio_exovorus_JSS 2 1
Bdellovibrio_bacteriovorus_str._Tiberius 10 8
Arcobacter_butzleri_7h1h 2 1
Arcobacter_butzleri_ED-1 4 1
Desulfovibrio_vulgaris_RCH1 3 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 5 2
Desulfovibrio_vulgaris_str._Hildenborough 3 1
Geobacter_sulfurreducens_PCA 37 1
Nitrosomonas_sp._AL212 7 1
Octadecabacter_arcticus_238 7 1
Rhodobacter_sphaeroides_KD131 6 1
Rhodobacter_sphaeroides_2.4.1 6 1
Methylobacterium_extorquens_DM4 2 1
Rhizobium_etli_CFN_42 2 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 3 2
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Aeromonas_hydrophila_ML09-119 3 2
Vibrio_parahaemolyticus_BB22OP 9 2
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 28 10
Vibrio_cholerae_M66-2 3 1
Vibrio_cholerae_O395 3 1
Vibrio_cholerae_O1_str._2010EL-1786 3 1
Vibrio_cholerae_MJ-1236 3 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 2 2
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_putrefaciens_200 1 1
Glaciecola_psychrophila_170 4 3
Alteromonas_macleodii_str._'English_Channel_673' 4 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2 1
Alteromonas_macleodii_str._'Black_Sea_11' 2 1
Alteromonas_macleodii_ATCC_27126 2 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 5 2
Xanthomonas_axonopodis_pv._citrumelo_F1 5 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 3 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 1
Xanthomonas_campestris_pv._raphani_756C 3 2
Xanthomonas_campestris_pv._campestris_str._8004 3 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 3 2
Spiribacter_salinus_M19-40 2 2
Pseudomonas_monteilii_SB3101 3 1
Pseudomonas_monteilii_SB3078 3 1
Pseudomonas_putida_HB3267 10 1
Pseudomonas_putida_NBRC_14164 5 1
Pseudomonas_putida_S16 3 1
Pseudomonas_putida_BIRD-1 10 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 5 2
Pseudomonas_putida_KT2440 10 1
Pseudomonas_putida_GB-1 8 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 2 1
Pseudomonas_resinovorans_NBRC_106553 11 1
Methylophaga_sp._JAM7 1 1
Thermococcus_litoralis_DSM_5473 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   59 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   59 9
Gorilla_gorilla_69_3.1   (Western gorilla)   56 9
Pongo_abelii_69_2   (Sumatran orangutan)   55 9
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   59 9
Macaca_mulatta_69_1   (Rhesus monkey)   55 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   62 11
Otolemur_garnettii_69_3   (Small-eared galago)   54 8
Microcebus_murinus_69_1   (Gray mouse lemur)   41 8
Rattus_norvegicus_69_3.4   (Norway rat)   35 9
Mus_musculus_69_38   (House mouse)   61 10
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   51 8
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   19 8
Cavia_porcellus_69_3   (Domestic guinea pig)   56 8
Oryctolagus_cuniculus_69_2   (Rabbit)   51 9
Ochotona_princeps_69   (American pika)   46 8
Tupaia_belangeri_69   (Northern tree shrew)   44 7
Sus_scrofa_69_10.2   (Pig)   16 6
Bos_taurus_69_3.1   (Cattle)   54 8
Vicugna_pacos_69_1   (Alpaca)   54 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   55 8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   55 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   55 8
Canis_familiaris_69_3.1   (Dog)   55 7
Felis_catus_69   (Domestic cat)   39 9
Equus_caballus_69_2   (Horse)   57 9
Myotis_lucifugus_69_2.0   (Little brown bat)   54 7
Pteropus_vampyrus_69_1   (Large flying fox)   53 8
Sorex_araneus_69_1   (European shrew)   44 7
Erinaceus_europaeus_69   (Western European hedgehog)   32 6
Procavia_capensis_69_1   (Cape rock hyrax)   42 8
Loxodonta_africana_69_3   (African savanna elephant)   45 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   45 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   43 7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   41 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   51 9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   27 10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   57 8
Ornithorhynchus_anatinus_69_5   (Platypus)   53 8
Petromyzon_marinus_69_7.0   (Sea lamprey)   49 5
Meleagris_gallopavo_69_2   (Turkey)   18 6
Gallus_gallus_69_2   (Chicken)   52 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   54 7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   40 9
Anolis_carolinensis_69_2.0   (Green anole)   52 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   62 11
Latimeria_chalumnae_69_1   (Coelacanth)   63 11
Gadus_morhua_69_1   (Atlantic cod)   63 15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   39 15
Takifugu_rubripes_69_4   (Torafugu)   77 15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   67 14
Oryzias_latipes_69_1   (Japanese medaka)   65 12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   68 15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   77 15
Danio_rerio_69_9   (Zebrafish)   75 14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   14 5
Ciona_intestinalis_69   (Vase tunicate)   18 9
Drosophila_melanogaster_69_5   (Fruit fly)   2 1
Caenorhabditis_elegans_69_215   (Roundworm)   6 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   131 39
Homo_sapiens__(NCBI_version)   (Human)   74 18
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   59 9
Loa_loa_v3.3_(Request)   (Eye worm)   4 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 7 1
NCBI_plasmid_sequences_(Plasmids) 108 34
Protein_Data_Bank_(all_PDB_sequenc) 39 32
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 62 62
UniProt__viral_sequences_(Viral) 6 3
STRING_v9.0.5_(STRING) 2616 611
PDB_chains_(SCOP_1.75)_(PDB) 3 3
NCBI_viral_sequences_(Viral) 13 13
Uniprot_2018_03_genome 32196 12754
NCBI_2017_08_genome 52077 16545
Protozoadb_2010_08_(Protozoadb) 8 4
TargetDB__(Targets) 81 28

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