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Domain combinations for At5g01610-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a At5g01610-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 14 14
Pinus_taeda   (Loblolly pine)   31 30
Picea_abies   (Norway spruce)   37 35
Eucalyptus_grandis_v201   (Rose gum)   37 37
Theobroma_cacao_B97-61/B2_v1   (Cacao)   21 20
Gossypium_raimondii_v221 54 54
Citrus_clementina_v165 25 25
Citrus_sinensis_v154   (Sweet orange)   26 26
Thellungiella_halophila_v173 27 27
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   41 41
Capsella_rubella_v183 22 22
Arabidopsis_lyrata_   (Lyrate rockcress)   22 22
Arabidopsis_thaliana_10   (Thale cress)   24 24
Carica_papaya_   (Papaya)   17 17
Medicago_truncatula_   (Barrel medic)   29 29
Phaseolus_vulgaris_v186   (French bean)   23 23
Glycine_max_v109   (Soybean)   41 41
Cucumis_sativus_v122   (Cucumber)   23 23
Fragaria_vesca_   (Wild strawberry)   23 23
Malus_domestica_v196   (Apple)   53 49
Prunus_persica_v139   (Peach)   20 20
Linum_usitatissimum_v200   (Flax)   46 46
Manihot_esculenta_v147   (Cassava)   29 29
Populus_trichocarpa_v156   (Black cottonwood)   34 34
Vitis_vinifera_   (Wine grape)   19 19
Mimulus_guttatus_v140   (Spotted monkey flower)   25 25
Solanum_lycopersicum_v.2.3   (Tomato)   26 26
Solanum_tuberosum_   (Potato)   37 37
Actinidia_chinensis_Hongyang_ 38 38
Aquilegia_coerulea_v195 18 18
Triticum_urartu_22 38 37
Triticum_aestivum_22   (Bread wheat)   107 107
Aegilops_tauschii_22 35 34
Brachypodium_distachyon_   (Stiff brome)   37 37
Oryza_barthii_22   (African wild rice)   43 39
Oryza_meridionalis_22 40 38
Oryza_glumaepatula_22 49 38
Oryza_glaberrima   (African rice)   30 30
Oryza_punctata_22 43 41
Oryza_nivara_22 46 44
Oryza_brachyantha_22   (Malo sina)   38 38
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   42 42
Oryza_sativa_v193   (Rice)   42 42
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   26 26
Panicum_virgatum_v202   (Switchgrass)   92 92
Setaria_italica_v164   (Foxtail millet)   52 52
Zea_mays_subsp._mays_   (Maize)   50 50
Zea_mays_v181   (Maize)   51 51
Sorghum_bicolor_   (Sorghum)   50 50
Musa_balbisiana   (Balbis banana)   42 42
Musa_acuminata_22   (Wild Malaysian banana)   30 30
Amborella_trichopoda_22 15 15
Physcomitrella_patens 8 8

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   21 21
Hordeum_vulgare_22   (Domesticated barley)   39 39
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   43 43
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   22 22

Others
Genome     Number   Proteins
Pinus_sylvestris__(Incomplete)   (Scots pine)   6 6
Picea_sitchensis__(Incomplete)   (Sitka spruce)   15 15
Lotus_japonicus__(Early_assembly) 23 23
Malus_x_domestica_(Duplicate)   (Apple)   53 49
Ricinus_communis__(Early_assembly)   (Castor bean)   21 21
Nicotiana_benthamiana_0.4.4_(Early_draft) 55 51
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   26 26
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   26 26
Phoenix_dactylifera__(Early_draft)   (Date palm)   10 10
STRING_v9.0.5_(STRING) 263 263
NCBI_2017_08_genome 2512 2506
Uniprot_2018_03_genome 3279 3233
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 1 1
TargetDB__(Targets) 27 27
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3 3

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