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Domain combinations for AF0625-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a AF0625-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 2 2
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   4 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 10 10
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   1 1
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   2 2
Arabidopsis_thaliana_10   (Thale cress)   1 1
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   3 3
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   9 7
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   1 1
Manihot_esculenta_v147   (Cassava)   5 5
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   2 2
Solanum_tuberosum_   (Potato)   8 8
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   6 6
Aegilops_tauschii_22 3 3
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   7 7
Oryza_meridionalis_22 3 3
Oryza_glumaepatula_22 6 5
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 8 5
Oryza_nivara_22 4 4
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3 3
Oryza_sativa_v193   (Rice)   3 3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4 4
Panicum_virgatum_v202   (Switchgrass)   3 3
Setaria_italica_v164   (Foxtail millet)   2 2
Zea_mays_subsp._mays_   (Maize)   4 4
Zea_mays_v181   (Maize)   4 4
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   4 4
Amborella_trichopoda_22 1 1
Physcomitrella_patens 2 2
Bigelowiella_natans_CCMP2755_22 1 1
Ectocarpus_siliculosus 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Clostridium_difficile_630 1 1
Clostridium_sticklandii_DSM_519 1 1
Thermovirga_lienii_DSM_17291 1 1
Burkholderia_vietnamiensis_G4 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Acidilobus_saccharovorans_345-15 1 1
Fervidicoccus_fontis_Kam940 1 1
Pyrolobus_fumarii_1A 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Thermogladius_cellulolyticus_1633 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Aeropyrum_pernix_K1 1 1
Ignicoccus_hospitalis_KIN4/I 1 1
Thermosphaera_aggregans_DSM_11486 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Desulfurococcus_mucosus_DSM_2162 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 1 1
halophilic_archaeon_DL31 1 1
Methanocella_conradii_HZ254 1 1
Methanocella_paludicola_SANAE 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 1 1
Methanospirillum_hungatei_JF-1 1 1
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Methanopyrus_kandleri_AV19 1 1
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 1 1
Thermoplasma_volcanium_GSS1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 1 1
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_fervens_AG86 1 1
Methanocaldococcus_vulcanius_M7 1 1
methanocaldococcus_infernus_ME 1 1
Methanocaldococcus_jannaschii_DSM_2661 1 1
Methanothermococcus_okinawensis_IH1 1 1
Methanococcus_aeolicus_Nankai-3 1 1
Methanococcus_maripaludis_C5 1 1
Methanococcus_voltae_A3 1 1
Methanococcus_vannielii_SB 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   4 4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 3
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Burkholderia_sp._KJ006 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Aeropyrum_camini_SY1_=_JCM_12091 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1
Ferroplasma_acidarmanus_fer1 1 1
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 1 1
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1
Methanococcus_maripaludis_X1 1 1
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1
Methanococcus_maripaludis_S2 1 1

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Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   1 1

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   9 7
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 2
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 1
PDB_chains_(SCOP_1.75)_(PDB) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 20 20
STRING_v9.0.5_(STRING) 80 80
NCBI_viral_sequences_(Viral) 1 1
Uniprot_2018_03_genome 1354 1350
TargetDB__(Targets) 7 7
NCBI_2017_08_genome 1757 1757
Protein_Data_Bank_(all_PDB_sequenc) 4 4

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