SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for NAP-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a NAP-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   73 73
Pan_troglodytes_76_2.1.4   (Chimpanzee)   32 32
Gorilla_gorilla_76_3.1   (Western gorilla)   18 18
Pongo_abelii_76_2   (Sumatran orangutan)   13 13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   12 12
Papio_anubis_76   (Olive baboon)   17 17
Macaca_mulatta_76_1   (Rhesus monkey)   23 23
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   41 41
Otolemur_garnettii_76_3   (Small-eared galago)   19 18
Microcebus_murinus_76_1   (Gray mouse lemur)   9 8
Rattus_norvegicus_76_5.0   (Norway rat)   16 16
Mus_musculus_76_38   (House mouse)   16 16
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12 12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   23 22
Cavia_porcellus_76_3   (Domestic guinea pig)   13 13
Oryctolagus_cuniculus_76_2   (Rabbit)   18 18
Ochotona_princeps_76   (American pika)   7 7
Tupaia_belangeri_76   (Northern tree shrew)   9 7
Sus_scrofa_76_10.2   (Pig)   11 11
Bos_taurus_76_3.1   (Cattle)   33 33
Ovis_aries_76_3.1   (Sheep)   28 27
Vicugna_pacos_76_1   (Alpaca)   8 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   16 16
Ailuropoda_melanoleuca_76_1   (Giant panda)   15 15
Canis_familiaris_76_3.1   (Dog)   22 22
Felis_catus_76_6.2   (Domestic cat)   17 17
Equus_caballus_76_2   (Horse)   12 12
Myotis_lucifugus_76_2.0   (Little brown bat)   17 17
Pteropus_vampyrus_76_1   (Large flying fox)   8 7
Sorex_araneus_76_1   (European shrew)   5 5
Erinaceus_europaeus_76   (Western European hedgehog)   5 5
Procavia_capensis_76_1   (Cape rock hyrax)   7 6
Loxodonta_africana_76_3   (African savanna elephant)   15 15
Echinops_telfairi_76   (Small Madagascar hedgehog)   5 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   19 19
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 11 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   4 4
Gallus_gallus_76_4   (Chicken)   3 3
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_76_2.0   (Green anole)   4 4
Xenopus_laevis_   (African clawed frog)   23 23
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7 7
Latimeria_chalumnae_76_1   (Coelacanth)   8 8
Lepisosteus_oculatus_76   (Spotted gar)   6 6
Gadus_morhua_76_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7 7
Takifugu_rubripes_76_4   (Torafugu)   16 16
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5 5
Poecilia_formosa_76   (Amazon molly)   5 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   8 8
Astyanax_mexicanus_76   (Mexican tetra)   8 8
Danio_rerio_76_9   (Zebrafish)   9 9
Oikopleura_dioica 3 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   8 8
Ciona_intestinalis_76   (Vase tunicate)   4 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 9 9
Octopus_bimaculoides_280 5 5
Crassostrea_gigas_22   (Pacific oyster)   3 3
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 6 6
Capitella_sp._I_ 4 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 6 6
Drosophila_persimilis_1.3 6 6
Drosophila_suzukii 7 7
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 5 5
Drosophila_melanogaster_76_5   (Fruit fly)   6 6
Drosophila_erecta_1.3 4 4
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 4 4
Drosophila_mojavensis_1.3 4 4
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6 6
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   19 18
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   2 2
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 5 5
Caenorhabditis_remanei_ 4 4
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 4 4
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 3 3
Mnemiopsis_leidyi   (Sea walnut)   2 2
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 3
Hydra_vulgaris 3 3
Amphimedon_queenslandica 2 2
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 1 1
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 3 3
Mortierella_verticillata_NRRL_6337_ 3 3
Phycomyces_blakesleeanus_ 3 3
Rhizopus_oryzae_RA_99-880_ 6 6
Mucor_circinelloides_ 3 3
Rhizomucor_miehei_CAU432_ 3 3
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 2 2
Mixia_osmundae_IAM_14324_v1.0 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 12 12
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Melampsora_laricis-populina_ 3 3
Rhodotorula_graminis_WP1_v1.0 3 2
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 2 2
Wallemia_sebi_v1.0 2 2
Sphaerobolus_stellatus_v1.0 6 6
Piloderma_croceum_F_1598_v1.0 2 2
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 2 2
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 2 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 3 3
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 2 2
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 4 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 2 2
Tremella_mesenterica_   (Witches' butter)   2 2
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 2 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 2 2
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   3 3
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 2 2
Nectria_haematococca_mpVI_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 2 2
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 2 2
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 2 2
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 2 2
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 2 2
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 2 2
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 2 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 2 2
Candida_dubliniensis_CD36_ 2 2
Candida_tropicalis_MYA-3404_ 2 2
Candida_parapsilosis_ 2 2
Candida_albicans_SC5314 2 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Pichia_stipitis_CBS_6054_ 2 2
Candida_guilliermondii_ATCC_6260_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 2 2
Debaromyces_hansenii 2 2
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 2 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 2 2
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Candida_glabrata_CBS138 2 2
Kluyveromyces_thermotolerans_CBS_6340 2 2
Lachancea_kluyveri_ 2 2
Kluyveromyces_waltii 2 2
Ashbya_gossypii_ATCC_10895_ 4 4
Zygosaccharomyces_rouxii_ 2 2
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 2 2
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 3 3
Allomyces_macrogynus_ATCC_38327_ 4 4
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 13 13
Entamoeba_invadens_1.2 12 12
Entamoeba_histolytica_1 13 13
Selaginella_moellendorffii_ 8 8
Pinus_taeda   (Loblolly pine)   6 6
Picea_abies   (Norway spruce)   5 5
Eucalyptus_grandis_v201   (Rose gum)   10 10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3 3
Gossypium_raimondii_v221 37 37
Citrus_clementina_v165 19 14
Citrus_sinensis_v154   (Sweet orange)   15 14
Thellungiella_halophila_v173 16 16
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11 11
Capsella_rubella_v183 6 6
Arabidopsis_lyrata_   (Lyrate rockcress)   7 7
Arabidopsis_thaliana_10   (Thale cress)   11 11
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   18 18
Phaseolus_vulgaris_v186   (French bean)   6 6
Glycine_max_v109   (Soybean)   30 30
Cucumis_sativus_v122   (Cucumber)   9 8
Fragaria_vesca_   (Wild strawberry)   32 24
Malus_domestica_v196   (Apple)   11 11
Prunus_persica_v139   (Peach)   5 5
Linum_usitatissimum_v200   (Flax)   15 15
Manihot_esculenta_v147   (Cassava)   14 14
Populus_trichocarpa_v156   (Black cottonwood)   11 11
Vitis_vinifera_   (Wine grape)   4 4
Mimulus_guttatus_v140   (Spotted monkey flower)   8 8
Solanum_lycopersicum_v.2.3   (Tomato)   13 13
Solanum_tuberosum_   (Potato)   15 15
Actinidia_chinensis_Hongyang_ 9 9
Aquilegia_coerulea_v195 9 9
Triticum_urartu_22 5 5
Triticum_aestivum_22   (Bread wheat)   16 16
Aegilops_tauschii_22 4 4
Brachypodium_distachyon_   (Stiff brome)   9 9
Oryza_barthii_22   (African wild rice)   7 7
Oryza_meridionalis_22 7 7
Oryza_glumaepatula_22 8 8
Oryza_glaberrima   (African rice)   6 6
Oryza_punctata_22 7 7
Oryza_nivara_22 12 12
Oryza_brachyantha_22   (Malo sina)   4 4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11 11
Oryza_sativa_v193   (Rice)   11 11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9 8
Panicum_virgatum_v202   (Switchgrass)   12 12
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   6 6
Zea_mays_v181   (Maize)   6 6
Sorghum_bicolor_   (Sorghum)   6 4
Musa_balbisiana   (Balbis banana)   9 9
Musa_acuminata_22   (Wild Malaysian banana)   9 9
Amborella_trichopoda_22 4 4
Physcomitrella_patens 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 3 3
Volvox_carteri_v199 5 5
Chlamydomonas_reinhardtii_4.0 5 4
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Porphyridium_purpureum_02_2012 2 2
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 6 5
Cyanophora_paradoxa_ 2 2
Leishmania_mexicana_2.4 4 4
Leishmania_major_strain_Friedlin_ 4 4
Leishmania_infantum_JPCM5_2.4 4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4 4
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 4 4
Trypanosoma_congolense_2.4 5 5
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 2 2
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 2 2
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 7 7
Paramecium_tetraurelia_ 17 17
Tetrahymena_thermophila_SB210_1_ 3 3
Ichthyophthirius_multifiliis_strain_G5_ 4 4
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 3 3
Toxoplasma_gondii_ME49 3 3
Toxoplasma_gondii_GT1 3 3
Babesia_bovis_T2Bo_ 6 6
Theileria_parva__ 3 3
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 2 2
Naegleria_gruberi_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 3 2
Emiliania_huxleyi_CCMP1516_ 6 6

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   15 15
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 2 2
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 2 2
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 4 3
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 2 2
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 2 2
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_T73 1 1
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 2 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   4 4
Hordeum_vulgare_22   (Domesticated barley)   7 7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 8
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 1 1
Helicobacter_pylori_SouthAfrica20 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   20 20
Pan_troglodytes_69_2.1.4   (Chimpanzee)   23 23
Gorilla_gorilla_69_3.1   (Western gorilla)   17 17
Pongo_abelii_69_2   (Sumatran orangutan)   13 13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   11 11
Macaca_mulatta_69_1   (Rhesus monkey)   17 17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   28 28
Otolemur_garnettii_69_3   (Small-eared galago)   18 17
Microcebus_murinus_69_1   (Gray mouse lemur)   9 8
Rattus_norvegicus_69_3.4   (Norway rat)   16 16
Mus_musculus_69_38   (House mouse)   12 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   12 12
Cavia_porcellus_69_3   (Domestic guinea pig)   12 12
Oryctolagus_cuniculus_69_2   (Rabbit)   18 18
Ochotona_princeps_69   (American pika)   7 7
Tupaia_belangeri_69   (Northern tree shrew)   9 7
Sus_scrofa_69_10.2   (Pig)   10 10
Bos_taurus_69_3.1   (Cattle)   31 31
Vicugna_pacos_69_1   (Alpaca)   8 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15 15
Ailuropoda_melanoleuca_69_1   (Giant panda)   15 15
Canis_familiaris_69_3.1   (Dog)   21 21
Felis_catus_69   (Domestic cat)   7 6
Equus_caballus_69_2   (Horse)   11 11
Myotis_lucifugus_69_2.0   (Little brown bat)   17 17
Pteropus_vampyrus_69_1   (Large flying fox)   8 7
Sorex_araneus_69_1   (European shrew)   5 5
Erinaceus_europaeus_69   (Western European hedgehog)   5 5
Procavia_capensis_69_1   (Cape rock hyrax)   7 6
Loxodonta_africana_69_3   (African savanna elephant)   12 12
Echinops_telfairi_69   (Small Madagascar hedgehog)   5 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   3 3
Gallus_gallus_69_2   (Chicken)   3 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_69_2.0   (Green anole)   4 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   4 4
Latimeria_chalumnae_69_1   (Coelacanth)   5 5
Gadus_morhua_69_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_69_4   (Torafugu)   5 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 5
Oryzias_latipes_69_1   (Japanese medaka)   5 5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5 5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5 5
Danio_rerio_69_9   (Zebrafish)   6 6
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_69   (Vase tunicate)   4 4
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   6 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   79 78
Homo_sapiens__(NCBI_version)   (Human)   32 32
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   11 11
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 6 6
Malus_x_domestica_(Duplicate)   (Apple)   11 11
Ricinus_communis__(Early_assembly)   (Castor bean)   3 3
Nicotiana_benthamiana_0.4.4_(Early_draft) 21 19
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   13 13
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   13 13
Phoenix_dactylifera__(Early_draft)   (Date palm)   6 6
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 73 73
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 84 84
Protozoadb_2010_08_(Protozoadb) 128 128
TargetDB__(Targets) 29 29
STRING_v9.0.5_(STRING) 577 571
NCBI_2017_08_genome 6067 6007
Uniprot_2018_03_genome 6496 6437

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