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Domain combinations for YbiA-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YbiA-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Saccoglossus_kowalevskii_v3.0 1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 9 9
Crassostrea_gigas_22   (Pacific oyster)   58 57
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 3 3
Capitella_sp._I_ 3 2
Tetranychus_urticae_   (Two-spotted spider mite)   11 11
Pristionchus_pacificus_ 14 11
Meloidogyne_incognita_   (Southern root-knot nematode)   55 51
Meloidogyne_hapla_ 11 11
Onchocerca_volvulus_22 9 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   16 12
Caenorhabditis_japonica_ 8 6
Caenorhabditis_brenneri_ 9 7
Caenorhabditis_remanei_ 11 9
Caenorhabditis_elegans_76_235   (Roundworm)   15 11
Caenorhabditis_briggsae_2 9 7
Trichinella_spiralis_22 10 4
Mnemiopsis_leidyi   (Sea walnut)   1 1
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 1 1
Amphimedon_queenslandica 2 2
Proterospongia_sp._ATCC_50818_ 1 1
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Mortierella_verticillata_NRRL_6337_ 2 2
Mucor_circinelloides_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 5 5
Serpula_lacrymans_var._lacrymans_S7.9_ 8 7
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 4 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 4 4
Pisolithus_microcarpus_441_v1.0 4 4
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 4 4
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 11 11
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4 4
Galerina_marginata_v1.0 7 7
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 6 6
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 7 7
Stereum_hirsutum_FP-91666_SS1__v1.0 6 6
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 9 9
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 12 12
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 6 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5 5
Phanerochaete_chrysosporium_RP-78_2.1 7 5
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 2 2
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 3 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 1
Fusarium_verticillioides_7600_ 2 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Sclerotinia_sclerotiorum_ 3 3
Didymella_exigua_CBS_183.55_v1.0 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 3 3
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Catenaria_anguillulae_PL171_v1.0 6 5
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 3 3
Eucalyptus_grandis_v201   (Rose gum)   2 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 4 4
Citrus_clementina_v165 6 6
Citrus_sinensis_v154   (Sweet orange)   1 1
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   1 1
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   2 2
Phaseolus_vulgaris_v186   (French bean)   2 2
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   3 3
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   4 4
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Actinidia_chinensis_Hongyang_ 1 1
Aquilegia_coerulea_v195 1 1
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   3 3
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 1 1
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 1 1
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   4 4
Setaria_italica_v164   (Foxtail millet)   2 2
Zea_mays_subsp._mays_   (Maize)   1 1
Zea_mays_v181   (Maize)   1 1
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 2 2
Physcomitrella_patens 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Thecamonas_trahens_ATCC_50062_ 5 5
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 5 5
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 2 2
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 4 4
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 2 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_capsici_ 1 1
Perkinsus_marinus_ATCC_50983_ 4 4
Paramecium_tetraurelia_ 2 2
Tetrahymena_thermophila_SB210_1_ 4 4
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 7 7
Naegleria_gruberi_ 5 5
Trichomonas_vaginalis_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 6 6
Emiliania_huxleyi_CCMP1516_ 11 11
Leptolyngbya_sp._PCC_7376 1 1
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 2 2
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_6312 1 1
Microcoleus_sp._PCC_7113 2 2
Trichodesmium_erythraeum_IMS101 1 1
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 1 1
Halothece_sp._PCC_7418 1 1
Rivularia_sp._PCC_7116 2 2
Calothrix_sp._PCC_7507 2 2
Anabaena_variabilis_ATCC_29413 1 1
'Nostoc_azollae'_0708 1 1
Nostoc_sp._PCC_7107 2 2
Nostoc_punctiforme_PCC_73102 2 2
Nostoc_sp._PCC_7120 1 1
Nostoc_sp._PCC_7524 2 2
Anabaena_sp._90 1 1
Nakamurella_multipartita_DSM_44233 1 1
Catenulispora_acidiphila_DSM_44928 2 2
Frankia_symbiont_of_Datisca_glomerata 1 1
Frankia_alni_ACN14a 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Streptosporangium_roseum_DSM_43021 1 1
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinosynnema_mirum_DSM_43827 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 1 1
Propionibacterium_propionicum_F0230a 1 1
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 3 3
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 2 2
Rothia_dentocariosa_ATCC_17931 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 1 1
Ruminococcus_sp. 1 1
Ruminococcus_albus_7 1 1
butyrate-producing_bacterium_SM4/1 1 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Clostridium_lentocellum_DSM_5427 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Coprococcus_sp._ART55/1 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 1 1
Streptococcus_parasanguinis_ATCC_15912 1 1
Brevibacillus_brevis_NBRC_100599 2 2
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_mucilaginosus_3016 1 1
Paenibacillus_polymyxa_M1 1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1 1
Haliscomenobacter_hydrossis_DSM_1100 2 2
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 1 1
Fibrella_aestuarina 2 2
Spirosoma_linguale_DSM_74 1 1
Prevotella_ruminicola_23 2 2
Solitalea_canadensis_DSM_3403 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Parachlamydia_acanthamoebae_UV-7 2 2
Simkania_negevensis_Z 3 3
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 1 1
Brachyspira_murdochii_DSM_12563 1 1
Brachyspira_intermedia_PWS/A 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Treponema_primitia_ZAS-2 1 1
Sebaldella_termitidis_ATCC_33386 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Campylobacter_concisus_13826 1 1
Geobacter_sp._M21 1 1
Geobacter_bemidjiensis_Bem 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Methylibium_petroleiphilum_PM1 1 1
Burkholderia_phymatum_STM815 1 1
Ralstonia_pickettii_12D 2 2
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 3 3
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 1 1
Rhodoferax_ferrireducens_T118 1 1
Comamonas_testosteroni_CNB-2 1 1
Pusillimonas_sp._T7-7 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Magnetococcus_marinus_MC-1 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Jannaschia_sp._CCS1 1 1
Ruegeria_sp._TM1040 1 1
Methylocystis_sp._SC2 1 1
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_splendidus_LGP32 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Photobacterium_profundum_SS9 1 1
Shewanella_baltica_OS185 1 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_sp._BSs20148 1 1
Hahella_chejuensis_KCTC_2396 2 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Xenorhabdus_nematophila_ATCC_19061 1 1
Providencia_stuartii_MRSN_2154 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Shigella_boydii_CDC_3083-94 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_fergusonii_ATCC_35469 2 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Acinetobacter_oleivorans_DR1 1 1
Acinetobacter_baumannii_ATCC_17978 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_ruminantium_M1 1 1

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Strains
Genome     Number   Proteins
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   9 7
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 1
Hordeum_vulgare_22   (Domesticated barley)   6 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Chamaesiphon_minutus_PCC_6605 4 4
Dactylococcopsis_salina_PCC_8305 1 1
Synechococcus_sp._PCC_7002 1 1
Crinalium_epipsammum_PCC_9333 2 2
Oscillatoria_nigro-viridis_PCC_7112 2 2
Oscillatoria_acuminata_PCC_6304 2 2
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Stanieria_cyanosphaera_PCC_7437 2 2
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Cylindrospermum_stagnale_PCC_7417 2 2
Anabaena_cylindrica_PCC_7122 3 3
Frankia_sp._EuI1c 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 2 2
Actinoplanes_friuliensis_DSM_7358 1 1
Nocardia_brasiliensis_ATCC_700358 2 2
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Ruminococcus_champanellensis_18P13 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 3 3
Roseburia_intestinalis_XB6B4 1 1
Clostridium_sp._SY8519 2 2
Clostridium_saccharobutylicum_DSM_13864 2 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2 2
Clostridium_perfringens_SM101 2 2
Clostridium_perfringens_str._13 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Enterococcus_mundtii_QU_25 1 1
Streptococcus_oligofermentans_AS_1.3089 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Listeria_monocytogenes_EGD_sequence 1 1
Listeria_monocytogenes_serotype_4b_str._LL195 1 1
Listeria_monocytogenes_07PF0776 1 1
Listeria_monocytogenes_M7 3 3
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_SLCC2376 1 1
Listeria_monocytogenes_SLCC5850 1 1
Listeria_monocytogenes_ATCC_19117 1 1
Listeria_monocytogenes_L312 1 1
Listeria_monocytogenes_SLCC7179 1 1
Listeria_monocytogenes_SLCC2540 1 1
Listeria_monocytogenes_SLCC2378 1 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 2 2
Listeria_monocytogenes_L99 3 3
Listeria_monocytogenes_HCC23 3 3
Listeria_monocytogenes_10403S 1 1
Listeria_monocytogenes_Finland_1998 1 1
Listeria_monocytogenes_serotype_4b_str._F2365 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Brachyspira_pilosicoli_B2904 1 1
Fusobacterium_nucleatum_subsp._animalis_4_8 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Desulfobacula_toluolica_Tol2 1 1
Sorangium_cellulosum_So0157-2 2 2
Myxococcus_stipitatus_DSM_14675 2 2
Burkholderia_ambifaria_MC40-6 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS195 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_boydii_Sb227 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_JJ1886 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_NA114 1 1
Escherichia_coli_P12b 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_str._K-12_substr._MDS42 1 1
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1
Escherichia_coli_B_str._REL606 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 2 2
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_D1279779 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_SDF 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_ACICU 1 1

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Longest transcript per gene
Genome     Number   Proteins
Caenorhabditis_elegans_69_215   (Roundworm)   9 7
Arabidopsis_thaliana_10   (Thale cress)   1 1

Others
Genome     Number   Proteins
Loa_loa_v3.3_(Request)   (Eye worm)   11 9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8 6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   10 9
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   3 3
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 22 22
NCBI_2017_08_genome 19983 19949
TargetDB__(Targets) 23 19
Protozoadb_2010_08_(Protozoadb) 25 25
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2 2
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_viral_sequences_(Viral) 105 105
UniProt__viral_sequences_(Viral) 138 138
STRING_v9.0.5_(STRING) 252 242
Uniprot_2018_03_genome 6584 6236
Protein_Data_Bank_(all_PDB_sequenc) 1 1

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