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Domain combinations for E2F-DP heterodimerization region superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a E2F-DP heterodimerization region domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   30 30
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9 9
Gorilla_gorilla_76_3.1   (Western gorilla)   17 17
Pongo_abelii_76_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9 9
Papio_anubis_76   (Olive baboon)   12 12
Macaca_mulatta_76_1   (Rhesus monkey)   17 17
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   25 25
Otolemur_garnettii_76_3   (Small-eared galago)   10 10
Microcebus_murinus_76_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_76_5.0   (Norway rat)   8 8
Mus_musculus_76_38   (House mouse)   19 19
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   9 9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 11
Cavia_porcellus_76_3   (Domestic guinea pig)   8 8
Oryctolagus_cuniculus_76_2   (Rabbit)   11 11
Ochotona_princeps_76   (American pika)   8 8
Tupaia_belangeri_76   (Northern tree shrew)   6 6
Sus_scrofa_76_10.2   (Pig)   7 7
Bos_taurus_76_3.1   (Cattle)   8 8
Ovis_aries_76_3.1   (Sheep)   8 8
Vicugna_pacos_76_1   (Alpaca)   7 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   9 9
Canis_familiaris_76_3.1   (Dog)   10 10
Felis_catus_76_6.2   (Domestic cat)   8 8
Equus_caballus_76_2   (Horse)   8 8
Myotis_lucifugus_76_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_76_1   (Large flying fox)   9 9
Sorex_araneus_76_1   (European shrew)   5 5
Erinaceus_europaeus_76   (Western European hedgehog)   7 7
Procavia_capensis_76_1   (Cape rock hyrax)   9 9
Loxodonta_africana_76_3   (African savanna elephant)   13 13
Echinops_telfairi_76   (Small Madagascar hedgehog)   10 10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   13 13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   10 10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   10 10
Ornithorhynchus_anatinus_76_5   (Platypus)   9 9
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_76_2   (Turkey)   9 9
Gallus_gallus_76_4   (Chicken)   9 9
Anas_platyrhynchos_76_1.0   (Mallard)   7 7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 9
Anolis_carolinensis_76_2.0   (Green anole)   9 9
Xenopus_laevis_   (African clawed frog)   15 15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_76_1   (Coelacanth)   9 9
Lepisosteus_oculatus_76   (Spotted gar)   8 8
Gadus_morhua_76_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   13 13
Takifugu_rubripes_76_4   (Torafugu)   32 32
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   9 9
Poecilia_formosa_76   (Amazon molly)   9 9
Oreochromis_niloticus_76_1.0   (Nile tilapia)   12 12
Astyanax_mexicanus_76   (Mexican tetra)   10 10
Danio_rerio_76_9   (Zebrafish)   19 19
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_76   (Vase tunicate)   3 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   4 4
Adineta_vaga 4 4
Octopus_bimaculoides_280 7 7
Crassostrea_gigas_22   (Pacific oyster)   4 4
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 2 2
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   12 12
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 3 3
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   7 7
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 4
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   4 4
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   7 7
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 3 3
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 7
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   7 7
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 3 2
Echinococcus_granulosus_ 3 2
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 3 2
Mnemiopsis_leidyi   (Sea walnut)   3 3
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   8 8
Hydra_vulgaris 3 3
Amphimedon_queenslandica 3 3
Trichoplax_adhaerens_ 3 3
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Mortierella_verticillata_NRRL_6337_ 1 1
Rhizopus_oryzae_RA_99-880_ 2 2
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 6 6
Pinus_taeda   (Loblolly pine)   6 6
Picea_abies   (Norway spruce)   5 5
Eucalyptus_grandis_v201   (Rose gum)   6 6
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4 4
Gossypium_raimondii_v221 31 31
Citrus_clementina_v165 8 8
Citrus_sinensis_v154   (Sweet orange)   11 11
Thellungiella_halophila_v173 6 6
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   10 10
Capsella_rubella_v183 5 5
Arabidopsis_lyrata_   (Lyrate rockcress)   5 5
Arabidopsis_thaliana_10   (Thale cress)   12 12
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   6 6
Phaseolus_vulgaris_v186   (French bean)   6 6
Glycine_max_v109   (Soybean)   18 18
Cucumis_sativus_v122   (Cucumber)   10 10
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   10 10
Prunus_persica_v139   (Peach)   5 5
Linum_usitatissimum_v200   (Flax)   10 10
Manihot_esculenta_v147   (Cassava)   8 8
Populus_trichocarpa_v156   (Black cottonwood)   7 7
Vitis_vinifera_   (Wine grape)   5 5
Mimulus_guttatus_v140   (Spotted monkey flower)   5 5
Solanum_lycopersicum_v.2.3   (Tomato)   7 6
Solanum_tuberosum_   (Potato)   19 19
Actinidia_chinensis_Hongyang_ 6 6
Aquilegia_coerulea_v195 7 7
Triticum_urartu_22 6 6
Triticum_aestivum_22   (Bread wheat)   21 21
Aegilops_tauschii_22 5 5
Brachypodium_distachyon_   (Stiff brome)   7 7
Oryza_barthii_22   (African wild rice)   7 7
Oryza_meridionalis_22 13 13
Oryza_glumaepatula_22 9 9
Oryza_glaberrima   (African rice)   6 6
Oryza_punctata_22 18 18
Oryza_nivara_22 10 10
Oryza_brachyantha_22   (Malo sina)   5 5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10 10
Oryza_sativa_v193   (Rice)   8 8
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13 12
Panicum_virgatum_v202   (Switchgrass)   14 14
Setaria_italica_v164   (Foxtail millet)   8 8
Zea_mays_subsp._mays_   (Maize)   10 10
Zea_mays_v181   (Maize)   10 10
Sorghum_bicolor_   (Sorghum)   9 9
Musa_balbisiana   (Balbis banana)   11 9
Musa_acuminata_22   (Wild Malaysian banana)   10 10
Amborella_trichopoda_22 4 4
Physcomitrella_patens 7 7
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 4 4
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 3 2
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Cyanidioschyzon_merolae_strain_10D_22 5 4
Cyanidioschyzon_merolae 5 4
Porphyridium_purpureum_02_2012 2 2
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 3 3
Ectocarpus_siliculosus 3 2
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 3 3
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Paramecium_tetraurelia_ 14 14
Tetrahymena_thermophila_SB210_1_ 2 2
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 3 3
Emiliania_huxleyi_CCMP1516_ 3 3
Mycoplasma_mycoides_subsp._capri_LC_str._95010 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   16 16
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7 7
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6 6
Hordeum_vulgare_22   (Domesticated barley)   13 13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   7 7

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   9 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   9 9
Gorilla_gorilla_69_3.1   (Western gorilla)   12 12
Pongo_abelii_69_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   9 9
Macaca_mulatta_69_1   (Rhesus monkey)   12 12
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_69_3   (Small-eared galago)   10 10
Microcebus_murinus_69_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_69_3.4   (Norway rat)   9 9
Mus_musculus_69_38   (House mouse)   8 8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9 9
Cavia_porcellus_69_3   (Domestic guinea pig)   8 8
Oryctolagus_cuniculus_69_2   (Rabbit)   9 9
Ochotona_princeps_69   (American pika)   8 8
Tupaia_belangeri_69   (Northern tree shrew)   6 6
Sus_scrofa_69_10.2   (Pig)   7 7
Bos_taurus_69_3.1   (Cattle)   8 8
Vicugna_pacos_69_1   (Alpaca)   6 6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   8 8
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   8 8
Canis_familiaris_69_3.1   (Dog)   9 9
Felis_catus_69   (Domestic cat)   9 8
Equus_caballus_69_2   (Horse)   8 8
Myotis_lucifugus_69_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_69_1   (Large flying fox)   8 8
Sorex_araneus_69_1   (European shrew)   5 5
Erinaceus_europaeus_69   (Western European hedgehog)   7 7
Procavia_capensis_69_1   (Cape rock hyrax)   8 8
Loxodonta_africana_69_3   (African savanna elephant)   10 10
Echinops_telfairi_69   (Small Madagascar hedgehog)   10 10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   6 6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   9 9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   9 9
Ornithorhynchus_anatinus_69_5   (Platypus)   8 8
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   8 8
Gallus_gallus_69_2   (Chicken)   8 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8 8
Anolis_carolinensis_69_2.0   (Green anole)   9 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_69_1   (Coelacanth)   7 7
Gadus_morhua_69_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10 10
Takifugu_rubripes_69_4   (Torafugu)   9 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7 7
Oryzias_latipes_69_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   9 9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9 9
Danio_rerio_69_9   (Zebrafish)   9 9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   4 4
Arabidopsis_thaliana_10   (Thale cress)   5 5

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   34 34
Homo_sapiens__(NCBI_version)   (Human)   16 16
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   8 8
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Lotus_japonicus__(Early_assembly) 6 6
Malus_x_domestica_(Duplicate)   (Apple)   10 10
Ricinus_communis__(Early_assembly)   (Castor bean)   4 4
Nicotiana_benthamiana_0.4.4_(Early_draft) 10 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7 6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7 6
Phoenix_dactylifera__(Early_draft)   (Date palm)   7 7
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 12 12
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 8 8
TargetDB__(Targets) 25 25
STRING_v9.0.5_(STRING) 375 374
Uniprot_2018_03_genome 4013 3964
Protozoadb_2010_08_(Protozoadb) 7 7
NCBI_2017_08_genome 6150 6120

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