SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Vanabin-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Vanabin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_76   (Vase tunicate)   5 5

Longest transcript per gene
Genome     Number   Proteins
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_69   (Vase tunicate)   5 5

Others
Genome     Number   Proteins
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 1 1
TargetDB__(Targets) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2 2
STRING_v9.0.5_(STRING) 7 7
NCBI_2017_08_genome 8 8
Uniprot_2018_03_genome 20 20

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