SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for HIT/MYND zinc finger-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a HIT/MYND zinc finger-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   103 103
Pan_troglodytes_76_2.1.4   (Chimpanzee)   21 21
Gorilla_gorilla_76_3.1   (Western gorilla)   30 30
Pongo_abelii_76_2   (Sumatran orangutan)   22 22
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   24 24
Papio_anubis_76   (Olive baboon)   23 23
Macaca_mulatta_76_1   (Rhesus monkey)   45 45
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   54 54
Otolemur_garnettii_76_3   (Small-eared galago)   22 22
Microcebus_murinus_76_1   (Gray mouse lemur)   18 18
Rattus_norvegicus_76_5.0   (Norway rat)   21 21
Mus_musculus_76_38   (House mouse)   55 55
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   15 15
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   21 21
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   20 20
Cavia_porcellus_76_3   (Domestic guinea pig)   20 20
Oryctolagus_cuniculus_76_2   (Rabbit)   21 21
Ochotona_princeps_76   (American pika)   16 16
Tupaia_belangeri_76   (Northern tree shrew)   15 15
Sus_scrofa_76_10.2   (Pig)   25 25
Bos_taurus_76_3.1   (Cattle)   21 21
Ovis_aries_76_3.1   (Sheep)   22 22
Vicugna_pacos_76_1   (Alpaca)   14 14
Tursiops_truncatus_76_1   (Bottlenose dolphin)   19 19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   19 19
Ailuropoda_melanoleuca_76_1   (Giant panda)   25 25
Canis_familiaris_76_3.1   (Dog)   29 29
Felis_catus_76_6.2   (Domestic cat)   20 20
Equus_caballus_76_2   (Horse)   20 20
Myotis_lucifugus_76_2.0   (Little brown bat)   23 23
Pteropus_vampyrus_76_1   (Large flying fox)   21 21
Sorex_araneus_76_1   (European shrew)   11 11
Erinaceus_europaeus_76   (Western European hedgehog)   14 14
Procavia_capensis_76_1   (Cape rock hyrax)   19 19
Loxodonta_africana_76_3   (African savanna elephant)   25 25
Echinops_telfairi_76   (Small Madagascar hedgehog)   15 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   26 26
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10 10
Macropus_eugenii_76_1.0   (Tammar wallaby)   16 16
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   26 26
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   24 24
Ornithorhynchus_anatinus_76_5   (Platypus)   15 15
Saccoglossus_kowalevskii_v3.0 44 40
Petromyzon_marinus_76_7.0   (Sea lamprey)   9 9
Meleagris_gallopavo_76_2   (Turkey)   18 18
Gallus_gallus_76_4   (Chicken)   17 17
Anas_platyrhynchos_76_1.0   (Mallard)   14 14
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   14 14
Ficedula_albicollis_76_1.0   (Collared flycatcher)   16 16
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   19 19
Anolis_carolinensis_76_2.0   (Green anole)   17 17
Xenopus_laevis_   (African clawed frog)   30 30
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   25 25
Latimeria_chalumnae_76_1   (Coelacanth)   29 29
Lepisosteus_oculatus_76   (Spotted gar)   26 26
Gadus_morhua_76_1   (Atlantic cod)   20 20
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   26 26
Takifugu_rubripes_76_4   (Torafugu)   52 52
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27 27
Oryzias_latipes_76_1   (Japanese medaka)   22 22
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   22 22
Poecilia_formosa_76   (Amazon molly)   22 22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   26 26
Astyanax_mexicanus_76   (Mexican tetra)   25 25
Danio_rerio_76_9   (Zebrafish)   33 33
Oikopleura_dioica 16 16
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   17 17
Ciona_intestinalis_76   (Vase tunicate)   16 16
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   22 22
Adineta_vaga 38 36
Octopus_bimaculoides_280 56 38
Crassostrea_gigas_22   (Pacific oyster)   24 22
Lottia_gigantea_   (Owl limpet)   22 21
Helobdella_robusta_ 14 14
Capitella_sp._I_ 24 24
Danaus_plexippus_OGS1.0   (Monarch butterfly)   20 20
Heliconius_melpomene_   (Postman butterfly)   15 15
Bombyx_mori_   (Domestic silkworm)   10 10
Nasonia_vitripennis_   (Jewel wasp)   29 28
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   28 28
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   82 82
Linepithema_humile_v1.1   (Argentine ant)   21 21
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   22 22
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   20 20
Atta_cephalotes_v1.1 20 20
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22 22
Lucilia_cuprina   (Australian sheep blowfly)   21 20
Drosophila_grimshawi_1.3 20 20
Drosophila_willistoni_1.3 24 23
Drosophila_pseudoobscura_2.13 25 24
Drosophila_persimilis_1.3 22 21
Drosophila_suzukii 26 24
Drosophila_yakuba_1.3 27 26
Drosophila_simulans_1.3 24 23
Drosophila_sechellia_1.3 24 24
Drosophila_melanogaster_76_5   (Fruit fly)   39 38
Drosophila_erecta_1.3 23 23
Drosophila_ananassae_1.3 25 25
Drosophila_virilis_1.2 21 21
Drosophila_mojavensis_1.3 21 21
Megaselia_scalaris_22 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   34 33
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   71 70
Anopheles_darlingi_22   (American malaria mosquito)   15 14
Anopheles_gambiae_49_3j   (African malaria mosquito)   41 40
Tribolium_castaneum_3.0   (Red flour beetle)   20 20
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18 18
Acyrthosiphon_pisum_   (Pea aphid)   16 16
Rhodnius_prolixus_22 17 17
Daphnia_pulex_   (Common water flea)   65 64
Strigamia_maritima_22 27 27
Sarcoptes_scabiei 9 9
Tetranychus_urticae_   (Two-spotted spider mite)   14 14
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   12 12
Pristionchus_pacificus_ 11 11
Meloidogyne_incognita_   (Southern root-knot nematode)   10 10
Meloidogyne_hapla_ 4 4
Onchocerca_volvulus_22 10 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   13 13
Caenorhabditis_japonica_ 12 12
Caenorhabditis_brenneri_ 19 18
Caenorhabditis_remanei_ 19 19
Caenorhabditis_elegans_76_235   (Roundworm)   24 24
Caenorhabditis_briggsae_2 16 16
Trichinella_spiralis_22 9 9
Hymenolepis_microstoma_ 10 10
Echinococcus_multilocularis_ 10 10
Echinococcus_granulosus_ 10 10
Taenia_solium_   (Pork tapeworm)   9 9
Schistosoma_mansoni_ 14 14
Mnemiopsis_leidyi   (Sea walnut)   22 22
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 33 28
Nematostella_vectensis_1.0   (Starlet sea anemone)   21 20
Hydra_vulgaris 11 11
Amphimedon_queenslandica 10 10
Trichoplax_adhaerens_ 9 9
Proterospongia_sp._ATCC_50818_ 16 16
Monosiga_brevicollis_ 17 15
Sphaeroforma_arctica_JP610_ 41 35
Capsaspora_owczarzaki_ATCC_30864_ 18 18
Conidiobolus_coronatus_NRRL28638_v1.0 7 7
Mortierella_verticillata_NRRL_6337_ 20 20
Phycomyces_blakesleeanus_ 14 14
Rhizopus_oryzae_RA_99-880_ 17 17
Mucor_circinelloides_ 14 14
Rhizomucor_miehei_CAU432_ 12 12
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 4 4
Ustilago_maydis_ 4 4
Mixia_osmundae_IAM_14324_v1.0 7 7
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 6 6
Melampsora_laricis-populina_ 8 8
Rhodotorula_graminis_WP1_v1.0 28 28
Sporobolomyces_roseus_IAM_13481_ 17 16
Microbotryum_violaceum_22 10 10
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 45 45
Piloderma_croceum_F_1598_v1.0 97 97
Serpula_lacrymans_var._lacrymans_S7.9_ 23 23
Coniophora_puteana 46 45
Hydnomerulius_pinastri_v2.0 41 41
Paxillus_rubicundulus_Ve08.2h10_v1.0 22 22
Pisolithus_microcarpus_441_v1.0 23 23
Pisolithus_tinctorius_Marx_270_v1.0 22 22
Scleroderma_citrinum_Foug_A_v1.0 20 20
Coprinopsis_cinerea_okayama7_130_v3 74 73
Pleurotus_ostreatus_   (Oyster mushroom)   24 23
Amanita_thiersii_Skay4041_v1.0 16 16
Amanita_muscaria_Koide_v1.0   (Fly agaric)   24 24
Galerina_marginata_v1.0 121 120
Hebeloma_cylindrosporum_h7_v2.0 65 65
Laccaria_bicolor_S238N-H82_ 50 49
Agaricus_bisporus_var._bisporus_ 18 18
Schizophyllum_commune_ 118 116
Stereum_hirsutum_FP-91666_SS1__v1.0 103 103
Heterobasidion_annosum_ 12 12
Gloeophyllum_trabeumv1.0 45 45
Punctularia_strigosozonata_v1.0 32 32
Sebacina_vermifera_MAFF_305830_v1.0 42 41
Fomitiporia_mediterranea_v1.0 12 12
Tulasnella_calospora_AL13/4D_v1.0 42 42
Postia_placenta_ 25 25
Wolfiporia_cocos_MD-104_SS10__v1.0 24 24
Fomitopsis_pinicolav1.0 57 57
Fomitopsis_pinicola_FP-58527_SS1_v3.0 57 57
Phanerochaete_chrysosporium_RP-78_2.1 25 25
Dichomitus_squalens 35 35
Trametes_versicolor_v1.0 91 91
Tremella_mesenterica_   (Witches' butter)   5 5
Daldinia_eschscholzii_EC12_v1.0 12 12
Apiospora_montagnei_NRRL_25634_v1.0 18 18
Magnaporthe_poae_ATCC_64411_22 5 5
Magnaporthe_grisea_70-15_ 10 10
Podospora_anserina_ 6 6
Sporotrichum_thermophile_ATCC_42464_ 8 8
Thielavia_terrestris_NRRL_8126_ 11 11
Chaetomium_globosum_CBS_148.51_ 7 7
Neurospora_tetrasperma_ 9 9
Neurospora_discreta_FGSC_8579_ 6 6
Neurospora_crassa_OR74A_ 9 9
Cryphonectria_parasitica_   (Chestnut blight fungus)   9 9
Verticillium_albo-atrum_VaMs.102_ 6 6
Verticillium_dahliae_VdLs.17_ 7 7
Acremonium_alcalophilumv_1.0 9 8
Glomerella_graminicola_22 9 9
Fusarium_graminearum_ 7 7
Nectria_haematococca_mpVI_ 8 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 10 10
Fusarium_verticillioides_7600_ 10 10
Trichoderma_asperellum_CBS_433.97_v1.0 10 10
Trichoderma_atroviride_ 11 11
Trichoderma_citrinoviride_v1.0 11 11
Trichoderma_reesei_1.2 12 12
Trichoderma_virens_Gv29-8_ 10 10
Trichoderma_longibrachiatum_ATCC_18648_v1.0 10 10
Trichoderma_harzianum_CBS_226.95_v1.0 14 14
Amorphotheca_resinae_v1.0   (Creosote fungus)   10 10
Botrytis_cinerea_B05.10_ 11 11
Sclerotinia_sclerotiorum_ 7 6
Blumeria_graminis_22 4 4
Didymella_exigua_CBS_183.55_v1.0 13 13
Leptosphaeria_maculans_22 8 8
Setosphaeria_turcica_v1.0 15 15
Cochliobolus_miyabeanus_ATCC_44560_v1.0 14 14
Cochliobolus_victoriae_FI3_v1.0 15 15
Cochliobolus_carbonum_26-R-13_v1.0 13 13
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   13 13
Alternaria_brassicicola_ 8 8
Cochliobolus_lunatus_m118_v2.0 13 13
Pyrenophora_teres_f._teres_22 17 16
Pyrenophora_tritici-repentis_ 11 11
Stagonospora_nodorum_ 17 17
Mycosphaerella_graminicola_IPO323_ 26 20
Zasmidium_cellare_ATCC_36951_v1.0 23 22
Dothistroma_septosporum 10 10
Septoria_musiva_v1.0 9 9
Mycosphaerella_fijiensis_CIRAD86_ 9 9
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 12 12
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 8 8
Coccidioides_immitis_RS_ 9 9
Ajellomyces_dermatitidis_SLH14081_ 5 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6 6
Microsporum_canis_CBS_113480_ 4 4
Trichophyton_equinum_CBS_127.97_ 4 4
Trichophyton_verrucosum_HKI_0517_ 4 4
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 7 7
Trichophyton_rubrum_CBS_118892_ 7 7
Uncinocarpus_reesii_1704_ 4 4
Aspergillus_zonatus_v1.0 9 9
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 4
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 6 6
Aspergillus_fumigatus_Af293 6 6
Aspergillus_brasiliensis_v1.0 9 9
Aspergillus_nidulans_FGSC_A4_ 5 5
Aspergillus_sydowii_v1.0 10 10
Aspergillus_versicolor_v1.0 12 12
Aspergillus_glaucus 8 8
Aspergillus_carbonarius_ITEM_5010_ 12 12
Neosartorya_fischeri_NRRL_181_ 7 7
Aspergillus_terreus_NIH2624_ 8 8
Aspergillus_tubingensis_v1.0 8 8
Aspergillus_wentii_v1.0 13 13
Aspergillus_oryzae_RIB40_ 6 6
Aspergillus_niger_22 8 8
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 7 7
Aspergillus_clavatus_NRRL_1_ 6 6
Penicillium_marneffei_ATCC_18224_ 11 11
Tuber_melanosporum_Mel28_22 5 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 5
Hansenula_polymorpha_v2.0 2 2
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 3 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 3 3
Candida_tropicalis_MYA-3404_ 3 3
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 3 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 5
Pichia_stipitis_CBS_6054_ 4 4
Candida_guilliermondii_ATCC_6260_ 3 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 4 4
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 5 5
Candida_lusitaniae_ATCC_42720_ 3 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 3 3
Candida_glabrata_CBS138 3 3
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 4 4
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 4 4
Saccharomyces_mikatae_MIT 3 3
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   3 3
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 3 3
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 15 15
Allomyces_macrogynus_ATCC_38327_ 17 17
Spizellomyces_punctatus_DAOM_BR117_ 16 16
Dictyostelium_discoideum 21 21
Dictyostelium_purpureum_ 14 14
Entamoeba_dispar_1.2 4 4
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 26 26
Pinus_taeda   (Loblolly pine)   7 7
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   26 26
Theobroma_cacao_B97-61/B2_v1   (Cacao)   18 18
Gossypium_raimondii_v221 44 44
Citrus_clementina_v165 26 26
Citrus_sinensis_v154   (Sweet orange)   26 26
Thellungiella_halophila_v173 15 15
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   22 22
Capsella_rubella_v183 14 14
Arabidopsis_lyrata_   (Lyrate rockcress)   15 15
Arabidopsis_thaliana_10   (Thale cress)   18 18
Carica_papaya_   (Papaya)   14 14
Medicago_truncatula_   (Barrel medic)   32 30
Phaseolus_vulgaris_v186   (French bean)   29 25
Glycine_max_v109   (Soybean)   44 43
Cucumis_sativus_v122   (Cucumber)   19 19
Fragaria_vesca_   (Wild strawberry)   10 10
Malus_domestica_v196   (Apple)   26 26
Prunus_persica_v139   (Peach)   15 15
Linum_usitatissimum_v200   (Flax)   16 16
Manihot_esculenta_v147   (Cassava)   19 19
Populus_trichocarpa_v156   (Black cottonwood)   24 24
Vitis_vinifera_   (Wine grape)   18 18
Mimulus_guttatus_v140   (Spotted monkey flower)   13 13
Solanum_lycopersicum_v.2.3   (Tomato)   13 13
Solanum_tuberosum_   (Potato)   12 12
Actinidia_chinensis_Hongyang_ 10 10
Aquilegia_coerulea_v195 21 21
Triticum_urartu_22 11 11
Triticum_aestivum_22   (Bread wheat)   29 29
Aegilops_tauschii_22 7 7
Brachypodium_distachyon_   (Stiff brome)   16 16
Oryza_barthii_22   (African wild rice)   11 11
Oryza_meridionalis_22 15 15
Oryza_glumaepatula_22 19 19
Oryza_glaberrima   (African rice)   9 9
Oryza_punctata_22 15 15
Oryza_nivara_22 22 22
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16 16
Oryza_sativa_v193   (Rice)   16 16
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   8 8
Panicum_virgatum_v202   (Switchgrass)   18 18
Setaria_italica_v164   (Foxtail millet)   13 13
Zea_mays_subsp._mays_   (Maize)   33 33
Zea_mays_v181   (Maize)   36 36
Sorghum_bicolor_   (Sorghum)   12 12
Musa_balbisiana   (Balbis banana)   17 17
Musa_acuminata_22   (Wild Malaysian banana)   27 27
Amborella_trichopoda_22 10 10
Physcomitrella_patens 14 14
Coccomyxa_subellipsoidea_sp._C-169_v2 22 21
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 62 62
Chlorella_vulgaris_ 21 21
Volvox_carteri_f._nagariensis_ 14 14
Volvox_carteri_v199 18 18
Chlamydomonas_reinhardtii_4.0 85 85
Ostreococcus_sp._RCC809_ 5 5
Ostreococcus_lucimarinus_CCE9901_ 6 6
Ostreococcus_tauri_ 6 6
Bathycoccus_prasinos_ 7 7
Micromonas_sp._RCC299_ 21 21
Micromonas_pusilla_CCMP1545_v3.0 42 41
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 5 5
Thecamonas_trahens_ATCC_50062_ 20 19
Bigelowiella_natans_CCMP2755_22 17 17
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 23 22
Leishmania_mexicana_2.4 11 10
Leishmania_major_strain_Friedlin_ 11 11
Leishmania_infantum_JPCM5_2.4 11 11
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 11 11
Trypanosoma_vivax_ 8 8
Trypanosoma_cruzi_strain_CL_Brener 8 8
Trypanosoma_congolense_2.4 10 10
Trypanosoma_brucei_gambiense_v4.1 9 9
Trypanosoma_brucei_TREU927_v4.1 9 9
Ectocarpus_siliculosus 20 20
Aureococcus_anophagefferens_ 63 58
Albugo_laibachii_22 18 18
Pythium_iwayamai_DAOM_BR242034_22 15 15
Pythium_arrhenomanes_ATCC_12531_22 23 23
Pythium_ultimum_v1.7-2 19 19
Pythium_aphanidermatum_DAOM_BR444_22 26 26
Pythium_irregulare_DAOM_BR486_22 18 18
Pythium_vexans_DAOM_BR484_22 19 19
Phytophthora_ramorum_1.1   (Sudden oak death agent)   21 21
Phytophthora_sojae_1.1 25 24
Phytophthora_infestans_T30-4_ 21 21
Phytophthora_capsici_ 14 14
Hyaloperonospora_arabidopsidis_22 18 18
Phaeodactylum_tricornutumCCAP_1055/1 11 11
Fragilariopsis_cylindrus 157 153
Thalassiosira_pseudonana_CCMP1335 8 8
Perkinsus_marinus_ATCC_50983_ 13 13
Paramecium_tetraurelia_ 33 33
Tetrahymena_thermophila_SB210_1_ 10 10
Ichthyophthirius_multifiliis_strain_G5_ 3 3
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 5 5
Cryptosporidium_parvum_Iowa_II 4 4
Neospora_caninum 6 6
Toxoplasma_gondii_VEG 6 6
Toxoplasma_gondii_ME49 6 6
Toxoplasma_gondii_GT1 6 6
Babesia_bovis_T2Bo_ 6 6
Theileria_parva__ 2 2
Theileria_annulata 3 3
Plasmodium_falciparum_3D7_ 6 6
Plasmodium_vivax_SaI-1_7.0 5 5
Plasmodium_knowlesi_strain_H_ 5 5
Plasmodium_yoelii_ssp._yoelii_1_ 4 4
Plasmodium_chabaudi_ 5 5
Plasmodium_berghei_ANKA_ 6 6
Symbiodinium_minutum_clade_B1_v1.2 36 35
Naegleria_gruberi_ 16 16
Trichomonas_vaginalis_ 4 4
Guillardia_theta_CCMP2712_v1.0_ 7 7
Emiliania_huxleyi_CCMP1516_ 44 44
Staphylothermus_hellenicus_DSM_12710 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   39 39
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   30 29
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   43 42
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   12 12
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   19 19
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 6 6
Coccidioides_posadasii_str._Silveira_ 7 7
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 9 9
Coccidioides_immitis_H538.4_ 7 7
Ajellomyces_dermatitidis_ER-3_ 4 4
Histoplasma_capsulatum_H143 6 6
Histoplasma_capsulatum_H88 7 7
Histoplasma_capsulatum_G186AR 6 6
Aspergillus_fumigatus_A1163_ 7 7
Candida_albicans_WO-1_ 3 3
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 3 3
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 2 2
Saccharomyces_cerevisiae_T7 3 3
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 3 3
Saccharomyces_cerevisiae_VL3 3 3
Saccharomyces_cerevisiae_Vin13 3 3
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 3 3
Saccharomyces_cerevisiae_Sigma1278b 3 3
Saccharomyces_cerevisiae_W303 3 3
Saccharomyces_cerevisiae_JAY291 3 3
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_YJM789_ 3 3
Saccharomyces_cerevisiae_YJM789 3 3
Saccharomyces_cerevisiae_RM11-1a 3 3
Saccharomyces_cerevisiae_RM11-1a_ 3 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3 3
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 8 8
Batrachochytrium_dendrobatidis_JAM81_ 10 10
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   14 14
Hordeum_vulgare_22   (Domesticated barley)   33 33
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   11 11
Trypanosoma_brucei_Lister_427_v4.1 9 9
Neospora_caninum_Nc-Liverpool_6.2 6 6
Plasmodium_falciparum_HB3_ 6 6
Plasmodium_falciparum_Dd2_ 4 4

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   24 24
Pan_troglodytes_69_2.1.4   (Chimpanzee)   21 21
Gorilla_gorilla_69_3.1   (Western gorilla)   22 22
Pongo_abelii_69_2   (Sumatran orangutan)   22 22
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   21 21
Macaca_mulatta_69_1   (Rhesus monkey)   24 24
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   24 24
Otolemur_garnettii_69_3   (Small-eared galago)   22 22
Microcebus_murinus_69_1   (Gray mouse lemur)   18 18
Rattus_norvegicus_69_3.4   (Norway rat)   20 20
Mus_musculus_69_38   (House mouse)   22 22
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   15 15
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21 21
Cavia_porcellus_69_3   (Domestic guinea pig)   20 20
Oryctolagus_cuniculus_69_2   (Rabbit)   19 19
Ochotona_princeps_69   (American pika)   16 16
Tupaia_belangeri_69   (Northern tree shrew)   15 15
Sus_scrofa_69_10.2   (Pig)   21 21
Bos_taurus_69_3.1   (Cattle)   20 20
Vicugna_pacos_69_1   (Alpaca)   14 14
Tursiops_truncatus_69_1   (Bottlenose dolphin)   19 19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   19 19
Ailuropoda_melanoleuca_69_1   (Giant panda)   22 22
Canis_familiaris_69_3.1   (Dog)   21 21
Felis_catus_69   (Domestic cat)   16 16
Equus_caballus_69_2   (Horse)   18 18
Myotis_lucifugus_69_2.0   (Little brown bat)   19 19
Pteropus_vampyrus_69_1   (Large flying fox)   21 21
Sorex_araneus_69_1   (European shrew)   11 11
Erinaceus_europaeus_69   (Western European hedgehog)   14 14
Procavia_capensis_69_1   (Cape rock hyrax)   19 19
Loxodonta_africana_69_3   (African savanna elephant)   18 18
Echinops_telfairi_69   (Small Madagascar hedgehog)   15 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13 13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10 10
Macropus_eugenii_69_1.0   (Tammar wallaby)   16 16
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   17 17
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   20 20
Ornithorhynchus_anatinus_69_5   (Platypus)   15 15
Petromyzon_marinus_69_7.0   (Sea lamprey)   9 9
Meleagris_gallopavo_69_2   (Turkey)   14 14
Gallus_gallus_69_2   (Chicken)   18 18
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13 13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17 17
Anolis_carolinensis_69_2.0   (Green anole)   17 17
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   20 20
Latimeria_chalumnae_69_1   (Coelacanth)   23 23
Gadus_morhua_69_1   (Atlantic cod)   20 20
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   23 23
Takifugu_rubripes_69_4   (Torafugu)   21 21
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   20 20
Oryzias_latipes_69_1   (Japanese medaka)   19 19
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   22 22
Oreochromis_niloticus_69_1.0   (Nile tilapia)   21 21
Danio_rerio_69_9   (Zebrafish)   25 25
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   11 11
Ciona_intestinalis_69   (Vase tunicate)   16 16
Drosophila_melanogaster_69_5   (Fruit fly)   24 23
Caenorhabditis_elegans_69_215   (Roundworm)   15 15
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3 3
Arabidopsis_thaliana_10   (Thale cress)   14 14

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   106 106
Homo_sapiens__(NCBI_version)   (Human)   55 55
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   21 21
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   11 11
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   8 8
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9 9
Moniliophthora_perniciosa_FA553__(Genome_survey) 21 21
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 13 13
Malus_x_domestica_(Duplicate)   (Apple)   26 26
Ricinus_communis__(Early_assembly)   (Castor bean)   11 11
Nicotiana_benthamiana_0.4.4_(Early_draft) 17 17
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   13 13
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   13 13
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
Protozoadb_2010_08_(Protozoadb) 186 186
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 24 24
STRING_v9.0.5_(STRING) 1806 1785
NCBI_2017_08_genome 23618 23408
Core_Eukaryotic_Genes_458_(CEGMA) 1 1
Uniprot_2018_03_genome 25833 25508
UniProt__viral_sequences_(Viral) 3 3
TargetDB__(Targets) 86 86
Protein_Data_Bank_(all_PDB_sequenc) 19 19
PDB_chains_(SCOP_1.75)_(PDB) 5 5
NCBI_viral_sequences_(Viral) 9 9

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