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Domain combinations for occludin/ELL-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a occludin/ELL-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   27 27
Pan_troglodytes_76_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_76_3.1   (Western gorilla)   8 8
Pongo_abelii_76_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7 7
Papio_anubis_76   (Olive baboon)   9 9
Macaca_mulatta_76_1   (Rhesus monkey)   9 9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   11 11
Otolemur_garnettii_76_3   (Small-eared galago)   5 5
Microcebus_murinus_76_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_76_5.0   (Norway rat)   7 7
Mus_musculus_76_38   (House mouse)   12 12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   6 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8 8
Cavia_porcellus_76_3   (Domestic guinea pig)   7 7
Oryctolagus_cuniculus_76_2   (Rabbit)   6 6
Ochotona_princeps_76   (American pika)   5 5
Tupaia_belangeri_76   (Northern tree shrew)   5 5
Sus_scrofa_76_10.2   (Pig)   9 9
Bos_taurus_76_3.1   (Cattle)   8 8
Ovis_aries_76_3.1   (Sheep)   9 9
Vicugna_pacos_76_1   (Alpaca)   4 4
Tursiops_truncatus_76_1   (Bottlenose dolphin)   6 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7 7
Ailuropoda_melanoleuca_76_1   (Giant panda)   7 7
Canis_familiaris_76_3.1   (Dog)   12 11
Felis_catus_76_6.2   (Domestic cat)   7 7
Equus_caballus_76_2   (Horse)   6 6
Myotis_lucifugus_76_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_76_1   (Large flying fox)   6 6
Sorex_araneus_76_1   (European shrew)   5 5
Erinaceus_europaeus_76   (Western European hedgehog)   3 3
Procavia_capensis_76_1   (Cape rock hyrax)   6 6
Loxodonta_africana_76_3   (African savanna elephant)   7 7
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6 6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   6 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8 8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 2 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   3 3
Gallus_gallus_76_4   (Chicken)   3 3
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   7 7
Anolis_carolinensis_76_2.0   (Green anole)   3 3
Xenopus_laevis_   (African clawed frog)   11 11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_76_1   (Coelacanth)   11 11
Lepisosteus_oculatus_76   (Spotted gar)   9 9
Gadus_morhua_76_1   (Atlantic cod)   12 12
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   14 14
Takifugu_rubripes_76_4   (Torafugu)   48 48
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   18 18
Oryzias_latipes_76_1   (Japanese medaka)   16 16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   12 12
Poecilia_formosa_76   (Amazon molly)   13 12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   18 18
Astyanax_mexicanus_76   (Mexican tetra)   8 8
Danio_rerio_76_9   (Zebrafish)   19 19
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2 2
Adineta_vaga 2 2
Octopus_bimaculoides_280 1 1
Lottia_gigantea_   (Owl limpet)   1 1
Capitella_sp._I_ 1 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 1 1
Drosophila_suzukii 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   2 2
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 1 1
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 1 1
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 1 1
Trichoplax_adhaerens_ 1 1
Pinus_taeda   (Loblolly pine)   1 1
Eucalyptus_grandis_v201   (Rose gum)   1 1
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   1 1
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Aquilegia_coerulea_v195 3 3
Oryza_brachyantha_22   (Malo sina)   1 1
Panicum_virgatum_v202   (Switchgrass)   1 1
Zea_mays_subsp._mays_   (Maize)   1 1
Zea_mays_v181   (Maize)   1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Ostreococcus_tauri_ 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Pythium_ultimum_v1.7-2 1 1
Cryptosporidium_muris 1 1
Naegleria_gruberi_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Methanocaldococcus_fervens_AG86 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   17 17
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1
Clostridium_acidurici_9a 1 1
Leuconostoc_carnosum_JB16 1 1
Paenibacillus_mucilaginosus_K02 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   8 8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_69_3.1   (Western gorilla)   6 6
Pongo_abelii_69_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 7
Macaca_mulatta_69_1   (Rhesus monkey)   7 7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   6 6
Otolemur_garnettii_69_3   (Small-eared galago)   5 5
Microcebus_murinus_69_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_69_3.4   (Norway rat)   8 7
Mus_musculus_69_38   (House mouse)   6 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6 6
Cavia_porcellus_69_3   (Domestic guinea pig)   7 7
Oryctolagus_cuniculus_69_2   (Rabbit)   6 6
Ochotona_princeps_69   (American pika)   5 5
Tupaia_belangeri_69   (Northern tree shrew)   5 5
Sus_scrofa_69_10.2   (Pig)   8 8
Bos_taurus_69_3.1   (Cattle)   8 8
Vicugna_pacos_69_1   (Alpaca)   4 4
Tursiops_truncatus_69_1   (Bottlenose dolphin)   6 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7 7
Ailuropoda_melanoleuca_69_1   (Giant panda)   7 7
Canis_familiaris_69_3.1   (Dog)   8 7
Felis_catus_69   (Domestic cat)   5 5
Equus_caballus_69_2   (Horse)   6 6
Myotis_lucifugus_69_2.0   (Little brown bat)   8 8
Pteropus_vampyrus_69_1   (Large flying fox)   6 6
Sorex_araneus_69_1   (European shrew)   5 5
Erinaceus_europaeus_69   (Western European hedgehog)   3 3
Procavia_capensis_69_1   (Cape rock hyrax)   6 6
Loxodonta_africana_69_3   (African savanna elephant)   7 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   6 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_69_5   (Platypus)   5 5
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   3 3
Gallus_gallus_69_2   (Chicken)   3 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5 5
Anolis_carolinensis_69_2.0   (Green anole)   4 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9 9
Latimeria_chalumnae_69_1   (Coelacanth)   7 7
Gadus_morhua_69_1   (Atlantic cod)   12 12
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   12 12
Takifugu_rubripes_69_4   (Torafugu)   13 13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   12 12
Oryzias_latipes_69_1   (Japanese medaka)   11 11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   12 12
Oreochromis_niloticus_69_1.0   (Nile tilapia)   12 12
Danio_rerio_69_9   (Zebrafish)   10 10
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   27 27
Homo_sapiens__(NCBI_version)   (Human)   8 8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6 6
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 11 11
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 11 11
Protozoadb_2010_08_(Protozoadb) 2 2
STRING_v9.0.5_(STRING) 197 196
TargetDB__(Targets) 9 9
Uniprot_2018_03_genome 1693 1682
NCBI_2017_08_genome 2792 2786
PDB_chains_(SCOP_1.75)_(PDB) 2 2

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