SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Orange domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Orange domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_76_3.1   (Western gorilla)   13 13
Pongo_abelii_76_2   (Sumatran orangutan)   9 9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   9 9
Papio_anubis_76   (Olive baboon)   10 10
Macaca_mulatta_76_1   (Rhesus monkey)   8 8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   15 15
Otolemur_garnettii_76_3   (Small-eared galago)   8 8
Microcebus_murinus_76_1   (Gray mouse lemur)   7 7
Rattus_norvegicus_76_5.0   (Norway rat)   10 10
Mus_musculus_76_38   (House mouse)   9 9
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10 10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8 8
Cavia_porcellus_76_3   (Domestic guinea pig)   9 9
Oryctolagus_cuniculus_76_2   (Rabbit)   6 6
Ochotona_princeps_76   (American pika)   7 7
Tupaia_belangeri_76   (Northern tree shrew)   3 3
Sus_scrofa_76_10.2   (Pig)   9 9
Bos_taurus_76_3.1   (Cattle)   12 12
Ovis_aries_76_3.1   (Sheep)   7 7
Vicugna_pacos_76_1   (Alpaca)   2 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   10 10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_76_1   (Giant panda)   9 9
Canis_familiaris_76_3.1   (Dog)   10 10
Felis_catus_76_6.2   (Domestic cat)   8 8
Equus_caballus_76_2   (Horse)   8 8
Myotis_lucifugus_76_2.0   (Little brown bat)   6 6
Pteropus_vampyrus_76_1   (Large flying fox)   9 9
Sorex_araneus_76_1   (European shrew)   2 2
Erinaceus_europaeus_76   (Western European hedgehog)   6 6
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   8 8
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   7 7
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   8 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8 8
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   10 10
Ornithorhynchus_anatinus_76_5   (Platypus)   10 10
Saccoglossus_kowalevskii_v3.0 11 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   6 6
Gallus_gallus_76_4   (Chicken)   7 7
Anas_platyrhynchos_76_1.0   (Mallard)   11 11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   9 9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9 9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   11 11
Anolis_carolinensis_76_2.0   (Green anole)   11 11
Xenopus_laevis_   (African clawed frog)   30 30
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17 17
Latimeria_chalumnae_76_1   (Coelacanth)   17 17
Lepisosteus_oculatus_76   (Spotted gar)   13 13
Gadus_morhua_76_1   (Atlantic cod)   12 12
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   13 13
Takifugu_rubripes_76_4   (Torafugu)   25 25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   24 24
Oryzias_latipes_76_1   (Japanese medaka)   13 13
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   14 14
Poecilia_formosa_76   (Amazon molly)   14 14
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15 15
Astyanax_mexicanus_76   (Mexican tetra)   14 14
Danio_rerio_76_9   (Zebrafish)   15 15
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_76   (Vase tunicate)   3 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   6 6
Adineta_vaga 4 4
Octopus_bimaculoides_280 6 6
Crassostrea_gigas_22   (Pacific oyster)   13 13
Lottia_gigantea_   (Owl limpet)   14 14
Helobdella_robusta_ 2 2
Capitella_sp._I_ 12 12
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6 6
Heliconius_melpomene_   (Postman butterfly)   7 7
Bombyx_mori_   (Domestic silkworm)   6 6
Nasonia_vitripennis_   (Jewel wasp)   4 4
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   21 21
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9 9
Linepithema_humile_v1.1   (Argentine ant)   8 8
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   8 8
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 9
Atta_cephalotes_v1.1 8 8
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8 8
Lucilia_cuprina   (Australian sheep blowfly)   12 10
Drosophila_grimshawi_1.3 8 8
Drosophila_willistoni_1.3 10 10
Drosophila_pseudoobscura_2.13 10 10
Drosophila_persimilis_1.3 10 10
Drosophila_suzukii 15 12
Drosophila_yakuba_1.3 10 10
Drosophila_simulans_1.3 11 11
Drosophila_sechellia_1.3 11 11
Drosophila_melanogaster_76_5   (Fruit fly)   14 14
Drosophila_erecta_1.3 10 10
Drosophila_ananassae_1.3 11 11
Drosophila_virilis_1.2 10 10
Drosophila_mojavensis_1.3 10 10
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7 7
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6 6
Anopheles_darlingi_22   (American malaria mosquito)   4 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   5 5
Tribolium_castaneum_3.0   (Red flour beetle)   7 7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7 7
Acyrthosiphon_pisum_   (Pea aphid)   10 10
Rhodnius_prolixus_22 5 5
Daphnia_pulex_   (Common water flea)   7 7
Strigamia_maritima_22 11 11
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   6 6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6 6
Trichinella_spiralis_22 4 4
Hymenolepis_microstoma_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 6 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   6 6
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   29 29
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   12 12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5 5

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   10 10
Pan_troglodytes_69_2.1.4   (Chimpanzee)   10 10
Gorilla_gorilla_69_3.1   (Western gorilla)   9 9
Pongo_abelii_69_2   (Sumatran orangutan)   9 9
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 7
Macaca_mulatta_69_1   (Rhesus monkey)   8 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   9 9
Otolemur_garnettii_69_3   (Small-eared galago)   8 8
Microcebus_murinus_69_1   (Gray mouse lemur)   7 7
Rattus_norvegicus_69_3.4   (Norway rat)   9 9
Mus_musculus_69_38   (House mouse)   9 9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   10 10
Cavia_porcellus_69_3   (Domestic guinea pig)   9 9
Oryctolagus_cuniculus_69_2   (Rabbit)   7 7
Ochotona_princeps_69   (American pika)   7 7
Tupaia_belangeri_69   (Northern tree shrew)   3 3
Sus_scrofa_69_10.2   (Pig)   9 9
Bos_taurus_69_3.1   (Cattle)   10 10
Vicugna_pacos_69_1   (Alpaca)   2 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   10 10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6 6
Ailuropoda_melanoleuca_69_1   (Giant panda)   9 9
Canis_familiaris_69_3.1   (Dog)   6 6
Felis_catus_69   (Domestic cat)   3 3
Equus_caballus_69_2   (Horse)   8 8
Myotis_lucifugus_69_2.0   (Little brown bat)   6 6
Pteropus_vampyrus_69_1   (Large flying fox)   9 9
Sorex_araneus_69_1   (European shrew)   2 2
Erinaceus_europaeus_69   (Western European hedgehog)   6 6
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   6 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   8 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   10 10
Ornithorhynchus_anatinus_69_5   (Platypus)   7 7
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   4 4
Gallus_gallus_69_2   (Chicken)   7 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   11 11
Anolis_carolinensis_69_2.0   (Green anole)   11 11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 12
Latimeria_chalumnae_69_1   (Coelacanth)   15 15
Gadus_morhua_69_1   (Atlantic cod)   12 12
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   13 13
Takifugu_rubripes_69_4   (Torafugu)   14 14
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   20 20
Oryzias_latipes_69_1   (Japanese medaka)   13 13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   14 14
Oreochromis_niloticus_69_1.0   (Nile tilapia)   14 14
Danio_rerio_69_9   (Zebrafish)   12 12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   11 11

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   21 21
Homo_sapiens__(NCBI_version)   (Human)   13 13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9 9
TargetDB__(Targets) 7 7
Protein_Data_Bank_(all_PDB_sequenc) 2 2
STRING_v9.0.5_(STRING) 393 393
PDB_chains_(SCOP_1.75)_(PDB) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4 4
Uniprot_2018_03_genome 3047 3037
NCBI_2017_08_genome 4530 4526

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