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Domain combinations for TAFH domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TAFH domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   36 36
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6 6
Gorilla_gorilla_76_3.1   (Western gorilla)   8 8
Pongo_abelii_76_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 5
Papio_anubis_76   (Olive baboon)   5 5
Macaca_mulatta_76_1   (Rhesus monkey)   12 12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   13 13
Otolemur_garnettii_76_3   (Small-eared galago)   5 5
Microcebus_murinus_76_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_76_5.0   (Norway rat)   5 5
Mus_musculus_76_38   (House mouse)   16 16
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 6
Cavia_porcellus_76_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_76_2   (Rabbit)   6 6
Ochotona_princeps_76   (American pika)   5 5
Tupaia_belangeri_76   (Northern tree shrew)   4 4
Sus_scrofa_76_10.2   (Pig)   7 7
Bos_taurus_76_3.1   (Cattle)   7 7
Ovis_aries_76_3.1   (Sheep)   6 6
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   10 10
Canis_familiaris_76_3.1   (Dog)   6 6
Felis_catus_76_6.2   (Domestic cat)   6 6
Equus_caballus_76_2   (Horse)   6 6
Myotis_lucifugus_76_2.0   (Little brown bat)   6 6
Pteropus_vampyrus_76_1   (Large flying fox)   5 5
Sorex_araneus_76_1   (European shrew)   4 4
Erinaceus_europaeus_76   (Western European hedgehog)   4 4
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   9 9
Echinops_telfairi_76   (Small Madagascar hedgehog)   6 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   10 10
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10 10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 5 5
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   8 8
Gallus_gallus_76_4   (Chicken)   5 5
Anas_platyrhynchos_76_1.0   (Mallard)   7 7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10 10
Anolis_carolinensis_76_2.0   (Green anole)   5 5
Xenopus_laevis_   (African clawed frog)   17 17
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   7 7
Latimeria_chalumnae_76_1   (Coelacanth)   10 10
Lepisosteus_oculatus_76   (Spotted gar)   10 10
Gadus_morhua_76_1   (Atlantic cod)   11 11
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   11 11
Takifugu_rubripes_76_4   (Torafugu)   21 21
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7 7
Poecilia_formosa_76   (Amazon molly)   8 8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   15 15
Astyanax_mexicanus_76   (Mexican tetra)   8 8
Danio_rerio_76_9   (Zebrafish)   9 9
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2 2
Adineta_vaga 6 6
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 2 2
Capitella_sp._I_ 1 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   12 12
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   3 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 2 2
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 2 2
Amphimedon_queenslandica 2 2
Trichoplax_adhaerens_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   7 7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7 7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   5 5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   5 5
Gorilla_gorilla_69_3.1   (Western gorilla)   5 5
Pongo_abelii_69_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5 5
Macaca_mulatta_69_1   (Rhesus monkey)   5 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_69_3   (Small-eared galago)   5 5
Microcebus_murinus_69_1   (Gray mouse lemur)   4 4
Rattus_norvegicus_69_3.4   (Norway rat)   4 4
Mus_musculus_69_38   (House mouse)   5 5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   4 4
Oryctolagus_cuniculus_69_2   (Rabbit)   5 5
Ochotona_princeps_69   (American pika)   5 5
Tupaia_belangeri_69   (Northern tree shrew)   4 4
Sus_scrofa_69_10.2   (Pig)   5 5
Bos_taurus_69_3.1   (Cattle)   5 5
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   5 5
Canis_familiaris_69_3.1   (Dog)   5 5
Felis_catus_69   (Domestic cat)   4 4
Equus_caballus_69_2   (Horse)   5 5
Myotis_lucifugus_69_2.0   (Little brown bat)   6 6
Pteropus_vampyrus_69_1   (Large flying fox)   5 5
Sorex_araneus_69_1   (European shrew)   4 4
Erinaceus_europaeus_69   (Western European hedgehog)   4 4
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   5 5
Echinops_telfairi_69   (Small Madagascar hedgehog)   6 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6 6
Ornithorhynchus_anatinus_69_5   (Platypus)   5 5
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   6 6
Gallus_gallus_69_2   (Chicken)   6 6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 6
Anolis_carolinensis_69_2.0   (Green anole)   5 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6 6
Latimeria_chalumnae_69_1   (Coelacanth)   7 7
Gadus_morhua_69_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   8 8
Takifugu_rubripes_69_4   (Torafugu)   8 8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7 7
Oryzias_latipes_69_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7 7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   8 8
Danio_rerio_69_9   (Zebrafish)   6 6
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   35 35
Homo_sapiens__(NCBI_version)   (Human)   23 23
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5 5
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
TargetDB__(Targets) 12 12
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 6 6
STRING_v9.0.5_(STRING) 176 176
Uniprot_2018_03_genome 1938 1931
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 10 10
NCBI_2017_08_genome 3785 3779

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