SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for AF1862-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a AF1862-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Thermobifida_fusca_YX 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Anaerolinea_thermophila_UNI-1 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Herpetosiphon_aurantiacus_DSM_785 2 2
Truepera_radiovictrix_DSM_17093 2 2
Deinococcus_geothermalis_DSM_11300 1 1
Marinithermus_hydrothermalis_DSM_14884 1 1
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 1 1
Thermus_thermophilus_HB27 1 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Pelotomaculum_thermopropionicum_SI 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Syntrophothermus_lipocalidus_DSM_12680 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Thermoanaerobacter_tengcongensis_MB4 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Halothermothrix_orenii_H_168 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_DSM_446 1 1
Paenibacillus_terrae_HPL-003 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Geobacillus_sp._GHH01 1 1
Geobacillus_sp._WCH70 1 1
Bacillus_halodurans_C-125 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Flexibacter_litoralis_DSM_6794 1 1
Porphyromonas_gingivalis_ATCC_33277 1 1
Isosphaera_pallida_ATCC_43644 1 1
Fretibacterium_fastidiosum 1 1
Anaerobaculum_mobile_DSM_13181 1 1
Treponema_azotonutricium_ZAS-9 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Flexistipes_sinusarabici_DSM_4947 1 1
Marinitoga_piezophila_KA3 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Fervidobacterium_pennivorans_DSM_9078 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Thermotoga_thermarum_DSM_5069 1 1
Thermotoga_sp._RQ2 1 1
Sulfurihydrogenibium_sp._YO3AOP1 1 1
Thermocrinis_albus_DSM_14484 1 1
Aquifex_aeolicus_VF5 1 1
Candidatus_Chloracidobacterium_thermophilum_B 2 2
Syntrophus_aciditrophicus_SB 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Rhodospirillum_centenum_SW 1 1
Azospirillum_lipoferum_4B 1 1
Teredinibacter_turnerae_T7901 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Halorhodospira_halophila_SL1 1 1
Allochromatium_vinosum_DSM_180 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Acidilobus_saccharovorans_345-15 1 1
Fervidicoccus_fontis_Kam940 1 1
Pyrolobus_fumarii_1A 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Ignicoccus_hospitalis_KIN4/I 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_solfataricus_P2 3 3
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 2 2
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_furiosus_COM1 1 1
Methanococcus_voltae_A3 2 2
Methanococcus_vannielii_SB 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Thermus_thermophilus_HB8 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Porphyromonas_gingivalis_TDC60 1 1
Porphyromonas_gingivalis_W83 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Myxococcus_stipitatus_DSM_14675 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Shewanella_putrefaciens_200 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 1 1
Sulfolobus_islandicus_LAL14/1 2 2
Sulfolobus_islandicus_REY15A 2 2
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 3 3
Sulfolobus_islandicus_L.S.2.15 2 2
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Pyrococcus_furiosus_DSM_3638 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 6 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 17 17
STRING_v9.0.5_(STRING) 66 66
Uniprot_2018_03_genome 625 624
NCBI_2017_08_genome 844 844
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 11 11
TargetDB__(Targets) 5 5

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]