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Domain combinations for Mib/herc2 domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Mib/herc2 domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   31 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4 3
Gorilla_gorilla_76_3.1   (Western gorilla)   10 7
Pongo_abelii_76_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 4
Papio_anubis_76   (Olive baboon)   6 4
Macaca_mulatta_76_1   (Rhesus monkey)   16 11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   12 9
Otolemur_garnettii_76_3   (Small-eared galago)   7 4
Microcebus_murinus_76_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_76_5.0   (Norway rat)   6 4
Mus_musculus_76_38   (House mouse)   11 8
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   4 4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 4
Cavia_porcellus_76_3   (Domestic guinea pig)   5 4
Oryctolagus_cuniculus_76_2   (Rabbit)   4 3
Ochotona_princeps_76   (American pika)   3 3
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   8 5
Bos_taurus_76_3.1   (Cattle)   7 5
Ovis_aries_76_3.1   (Sheep)   5 4
Vicugna_pacos_76_1   (Alpaca)   4 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   6 4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   6 4
Ailuropoda_melanoleuca_76_1   (Giant panda)   6 4
Canis_familiaris_76_3.1   (Dog)   9 6
Felis_catus_76_6.2   (Domestic cat)   4 4
Equus_caballus_76_2   (Horse)   6 5
Myotis_lucifugus_76_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_76_1   (Large flying fox)   5 4
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   2 2
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   7 5
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6 5
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8 7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   6 4
Ornithorhynchus_anatinus_76_5   (Platypus)   4 3
Saccoglossus_kowalevskii_v3.0 24 20
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 2
Meleagris_gallopavo_76_2   (Turkey)   5 4
Gallus_gallus_76_4   (Chicken)   6 4
Anas_platyrhynchos_76_1.0   (Mallard)   5 4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   6 4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6 4
Anolis_carolinensis_76_2.0   (Green anole)   5 4
Xenopus_laevis_   (African clawed frog)   14 7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11 7
Latimeria_chalumnae_76_1   (Coelacanth)   8 5
Lepisosteus_oculatus_76   (Spotted gar)   9 7
Gadus_morhua_76_1   (Atlantic cod)   6 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6 4
Takifugu_rubripes_76_4   (Torafugu)   16 9
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6 4
Oryzias_latipes_76_1   (Japanese medaka)   8 5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   6 4
Poecilia_formosa_76   (Amazon molly)   6 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   9 7
Astyanax_mexicanus_76   (Mexican tetra)   6 4
Danio_rerio_76_9   (Zebrafish)   5 4
Oikopleura_dioica 2 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   24 15
Ciona_intestinalis_76   (Vase tunicate)   7 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   38 29
Adineta_vaga 4 2
Octopus_bimaculoides_280 11 11
Crassostrea_gigas_22   (Pacific oyster)   72 42
Lottia_gigantea_   (Owl limpet)   7 4
Helobdella_robusta_ 4 3
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   4 3
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   4 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 4
Linepithema_humile_v1.1   (Argentine ant)   6 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6 4
Atta_cephalotes_v1.1 6 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 4
Lucilia_cuprina   (Australian sheep blowfly)   7 5
Drosophila_grimshawi_1.3 8 5
Drosophila_willistoni_1.3 6 4
Drosophila_pseudoobscura_2.13 5 3
Drosophila_persimilis_1.3 6 4
Drosophila_suzukii 6 5
Drosophila_yakuba_1.3 6 4
Drosophila_simulans_1.3 6 3
Drosophila_sechellia_1.3 6 4
Drosophila_melanogaster_76_5   (Fruit fly)   8 5
Drosophila_erecta_1.3 6 4
Drosophila_ananassae_1.3 6 4
Drosophila_virilis_1.2 6 4
Drosophila_mojavensis_1.3 6 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   7 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6 4
Anopheles_darlingi_22   (American malaria mosquito)   6 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   6 4
Tribolium_castaneum_3.0   (Red flour beetle)   6 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   6 4
Acyrthosiphon_pisum_   (Pea aphid)   3 2
Rhodnius_prolixus_22 5 4
Daphnia_pulex_   (Common water flea)   8 5
Strigamia_maritima_22 6 4
Sarcoptes_scabiei 2 1
Tetranychus_urticae_   (Two-spotted spider mite)   3 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6 3
Pristionchus_pacificus_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 4
Caenorhabditis_japonica_ 1 1
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   1 1
Caenorhabditis_briggsae_2 1 1
Hymenolepis_microstoma_ 4 2
Echinococcus_multilocularis_ 2 1
Echinococcus_granulosus_ 3 1
Taenia_solium_   (Pork tapeworm)   3 1
Schistosoma_mansoni_ 2 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 13 8
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 4
Hydra_vulgaris 3 2
Amphimedon_queenslandica 8 6
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 1 1
Entamoeba_dispar_1.2 6 3
Entamoeba_invadens_1.2 8 4
Entamoeba_histolytica_1 5 3
Chlamydomonas_reinhardtii_4.0 6 5
Cyanophora_paradoxa_ 8 4
Trypanosoma_vivax_ 1 1
Trypanosoma_congolense_2.4 1 1
Ectocarpus_siliculosus 3 3
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 4 3
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 3 2
Pythium_aphanidermatum_DAOM_BR444_22 3 3
Pythium_irregulare_DAOM_BR486_22 3 2
Pythium_vexans_DAOM_BR484_22 4 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 4 3
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Fragilariopsis_cylindrus 1 1
Symbiodinium_minutum_clade_B1_v1.2 10 6
Guillardia_theta_CCMP2712_v1.0_ 4 4
Alkaliphilus_metalliredigens_QYMF 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11 7
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   7 5
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4 3
Gorilla_gorilla_69_3.1   (Western gorilla)   6 4
Pongo_abelii_69_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5 4
Macaca_mulatta_69_1   (Rhesus monkey)   6 4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5 4
Otolemur_garnettii_69_3   (Small-eared galago)   5 3
Microcebus_murinus_69_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_69_3.4   (Norway rat)   6 4
Mus_musculus_69_38   (House mouse)   6 4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   4 4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   4 3
Cavia_porcellus_69_3   (Domestic guinea pig)   5 4
Oryctolagus_cuniculus_69_2   (Rabbit)   6 4
Ochotona_princeps_69   (American pika)   3 3
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   6 4
Bos_taurus_69_3.1   (Cattle)   6 4
Vicugna_pacos_69_1   (Alpaca)   4 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   6 4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   6 4
Ailuropoda_melanoleuca_69_1   (Giant panda)   6 4
Canis_familiaris_69_3.1   (Dog)   6 4
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   5 4
Myotis_lucifugus_69_2.0   (Little brown bat)   3 3
Pteropus_vampyrus_69_1   (Large flying fox)   5 4
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   2 2
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   5 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   5 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   6 4
Ornithorhynchus_anatinus_69_5   (Platypus)   4 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 2
Meleagris_gallopavo_69_2   (Turkey)   5 4
Gallus_gallus_69_2   (Chicken)   7 5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   6 4
Anolis_carolinensis_69_2.0   (Green anole)   5 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6 4
Latimeria_chalumnae_69_1   (Coelacanth)   7 4
Gadus_morhua_69_1   (Atlantic cod)   6 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6 4
Takifugu_rubripes_69_4   (Torafugu)   6 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   6 4
Oryzias_latipes_69_1   (Japanese medaka)   6 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   6 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   6 4
Danio_rerio_69_9   (Zebrafish)   4 3
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 3
Ciona_intestinalis_69   (Vase tunicate)   7 4
Drosophila_melanogaster_69_5   (Fruit fly)   6 4
Caenorhabditis_elegans_69_215   (Roundworm)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   37 23
Homo_sapiens__(NCBI_version)   (Human)   14 8
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6 4
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
NCBI_viral_sequences_(Viral) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 8 5
TargetDB__(Targets) 2 2
Protozoadb_2010_08_(Protozoadb) 22 12
PDB_chains_(SCOP_1.75)_(PDB) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 10 10
STRING_v9.0.5_(STRING) 303 216
Uniprot_2018_03_genome 3021 2111
NCBI_2017_08_genome 5646 3979

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