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Domain combinations for YerB-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YerB-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Thermobaculum_terrenum_ATCC_BAA-798 2 2
Ilumatobacter_coccineus 2 2
Acidimicrobium_ferrooxidans_DSM_10331 1 1
Thermobispora_bispora_DSM_43833 1 1
Nakamurella_multipartita_DSM_44233 1 1
Acidothermus_cellulolyticus_11B 2 2
Modestobacter_marinus 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 1 1
Saccharomonospora_viridis_DSM_43017 1 1
Saccharopolyspora_erythraea_NRRL_2338 2 2
Nocardioides_sp._JS614 1 1
Microlunatus_phosphovorus_NM-1 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Jonesia_denitrificans_DSM_20603 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_flavigena_DSM_20109 1 1
Cellulomonas_fimi_ATCC_484 2 2
[Cellvibrio]_gilvus_ATCC_13127 1 1
Mobiluncus_curtisii_ATCC_43063 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Anaerolinea_thermophila_UNI-1 2 2
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 2 2
Roseiflexus_castenholzii_DSM_13941 2 2
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Truepera_radiovictrix_DSM_17093 1 1
Oceanithermus_profundus_DSM_14977 1 1
Marinithermus_hydrothermalis_DSM_14884 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Symbiobacterium_thermophilum_IAM_14863 1 1
Clostridium_clariflavum_DSM_19732 1 1
Clostridium_thermocellum_ATCC_27405 1 1
Faecalibacterium_prausnitzii 2 2
Ruminococcus_sp. 1 1
Thermaerobacter_marianensis_DSM_12885 1 1
Sulfobacillus_acidophilus_DSM_10332 1 1
Oscillibacter_valericigenes_Sjm18-20 1 1
butyrate-producing_bacterium_SS3/4 1 1
Thermincola_potens_JR 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
Coprococcus_sp._ART55/1 1 1
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 3 3
Butyrivibrio_fibrisolvens 1 1
Alkaliphilus_oremlandii_OhILAs 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_perfringens_ATCC_13124 1 1
Thermosediminibacter_oceani_DSM_16646 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_owensensis_OL 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Halothermothrix_orenii_H_168 1 1
Halanaerobium_hydrogeniformans 1 1
Halanaerobium_praevalens_DSM_2228 1 1
Lactococcus_garvieae_ATCC_49156 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_mucilaginosus_3016 1 1
Paenibacillus_polymyxa_M1 1 1
Bacillus_selenitireducens_MLS10 1 1
Solibacillus_silvestris_StLB046 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Lysinibacillus_sphaericus_C3-41 1 1
Oceanobacillus_iheyensis_HTE831 1 1
Anoxybacillus_flavithermus_WK1 1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Geobacillus_kaustophilus_HTA426 1 1
Geobacillus_sp._GHH01 1 1
Geobacillus_sp._WCH70 1 1
Geobacillus_thermodenitrificans_NG80-2 1 1
Halobacillus_halophilus_DSM_2266 1 1
Bacillus_sp._JS 1 1
Bacillus_sp._1NLA3E 1 1
Bacillus_amyloliquefaciens_FZB42 1 1
Bacillus_atrophaeus_1942 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Bacillus_coagulans_2-6 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Candidatus_Saccharimonas_aalborgensis 1 1

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Strains
Genome     Number   Proteins
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Clostridium_thermocellum_DSM_1313 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 2 2
Ruminococcus_champanellensis_18P13 1 1
Sulfobacillus_acidophilus_TPY 1 1
Clostridium_acidurici_9a 1 1
Coprococcus_catus_GD/7 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_sp._SY8519 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Lactococcus_garvieae_Lg2 1 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Geobacillus_sp._C56-T3 1 1
Geobacillus_sp._Y4.1MC1 1 1
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Amphibacillus_xylanus_NBRC_15112 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1 1
Bacillus_amyloliquefaciens_LFB112 1 1
Bacillus_amyloliquefaciens_CC178 1 1
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_IT-45 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_LL3 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_amyloliquefaciens_DSM_7 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_XF-1 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_infantis_NRRL_B-14911 1 1
Bacillus_coagulans_36D1 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1

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Others
Genome     Number   Proteins
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4 4
TargetDB__(Targets) 4 4
STRING_v9.0.5_(STRING) 54 54
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Uniprot_2018_03_genome 3508 3448
NCBI_2017_08_genome 3517 3508
Protein_Data_Bank_(all_PDB_sequenc) 1 1

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