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Domain combinations for CPE0013-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CPE0013-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 2 2
Entamoeba_histolytica_1 2 2
Giardia_lamblia_2.3 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 1 1
Slackia_heliotrinireducens_DSM_20476 1 1
Olsenella_uli_DSM_7084 1 1
Coriobacterium_glomerans_PW2 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Megasphaera_elsdenii_DSM_20460 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1 1
Clostridium_clariflavum_DSM_19732 1 1
Faecalibacterium_prausnitzii 1 1
Ruminococcus_sp. 1 1
Ruminococcus_albus_7 1 1
butyrate-producing_bacterium_SS3/4 1 1
Acetobacterium_woodii_DSM_1030 4 4
Eubacterium_limosum_KIST612 8 8
Clostridium_sticklandii_DSM_519 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 2 2
[Ruminococcus]_obeum 1 1
[Ruminococcus]_torques 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Roseburia_hominis_A2-183 2 2
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 1 1
Alkaliphilus_oremlandii_OhILAs 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_novyi_NT 2 2
Clostridium_ljungdahlii_DSM_13528 2 2
Clostridium_kluyveri_DSM_555 1 1
Clostridium_beijerinckii_NCIMB_8052 2 2
Clostridium_tetani_E88 2 2
Clostridium_perfringens_ATCC_13124 2 2
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 2 2
Clostridium_acetobutylicum_ATCC_824 2 2
Mahella_australiensis_50-1_BON 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_owensensis_OL 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 2 2
Caldicellulosiruptor_bescii_DSM_6725 1 1
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Coprothermobacter_proteolyticus_DSM_5265 1 1
Tepidanaerobacter_acetatoxydans_Re1 2 2
Thermoanaerobacter_tengcongensis_MB4 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Halothermothrix_orenii_H_168 1 1
Halanaerobium_hydrogeniformans 2 2
Halanaerobium_praevalens_DSM_2228 2 2
Bacillus_selenitireducens_MLS10 1 1
Fretibacterium_fastidiosum 1 1
Thermanaerovibrio_acidaminovorans_DSM_6589 1 1
Anaerobaculum_mobile_DSM_13181 1 1
Brachyspira_murdochii_DSM_12563 1 1
Brachyspira_intermedia_PWS/A 1 1
Brachyspira_pilosicoli_95/1000 1 1
Brachyspira_hyodysenteriae_WA1 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Spirochaeta_caldaria_DSM_7334 1 1
Treponema_denticola_ATCC_35405 2 2
Spirochaeta_africana_DSM_8902 1 1
Marinitoga_piezophila_KA3 1 1
Petrotoga_mobilis_SJ95 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Kosmotoga_olearia_TBF_19.5.1 1 1
Fervidobacterium_pennivorans_DSM_9078 1 1
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Thermotoga_lettingae_TMO 2 2
Thermotoga_thermarum_DSM_5069 2 2
Thermotoga_sp._RQ2 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_neapolitana_DSM_4359 1 1
Thermotoga_maritima_MSB8 1 1
Dictyoglomus_turgidum_DSM_6724 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Caldisericum_exile_AZM16c01 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Ilyobacter_polytropus_DSM_2926 3 3
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1 1
Syntrophus_aciditrophicus_SB 1 1
Thermogladius_cellulolyticus_1633 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Thermofilum_sp._1910b 1 1
Thermococcus_sp._4557 2 2
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 2 2
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Arthrospira_platensis_NIES-39 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 2 2
Coprococcus_catus_GD/7 1 1
Roseburia_intestinalis_XB6B4 2 2
Clostridium_saccharobutylicum_DSM_13864 2 2
Clostridium_autoethanogenum_DSM_10061 2 2
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2 2
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_tetani_genome_12124569 2 2
Clostridium_perfringens_SM101 2 2
Clostridium_perfringens_str._13 2 2
Clostridium_pasteurianum_BC1 2 2
Clostridium_botulinum_H04402_065 2 2
Clostridium_botulinum_BKT015925 2 2
Clostridium_botulinum_F_str._230613 2 2
Clostridium_botulinum_F_str._Langeland 2 2
Clostridium_botulinum_E3_str._Alaska_E43 2 2
Clostridium_botulinum_B1_str._Okra 2 2
Clostridium_botulinum_Ba4_str._657 2 2
Clostridium_botulinum_A2_str._Kyoto 2 2
Clostridium_botulinum_A3_str._Loch_Maree 2 2
Clostridium_botulinum_A_str._Hall 2 2
Clostridium_botulinum_A_str._ATCC_19397 2 2
Clostridium_acetobutylicum_DSM_1731 2 2
Clostridium_acetobutylicum_EA_2018 2 2
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 2 2
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Thermoanaerobacter_sp._X513 1 1
Halobacteroides_halobius_DSM_5150 1 1
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Treponema_pedis_str._T_A4 2 2
Thermotoga_maritima_MSB8 1 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1 1
Fusobacterium_nucleatum_subsp._animalis_4_8 1 1
Desulfobacula_toluolica_Tol2 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_viral_sequences_(Viral) 2 2
Protozoadb_2010_08_(Protozoadb) 8 8
Protein_Data_Bank_(all_PDB_sequenc) 1 1
TargetDB__(Targets) 17 17
STRING_v9.0.5_(STRING) 85 85
Uniprot_2018_03_genome 1802 1802
NCBI_2017_08_genome 2597 2597
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3 3

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