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Domain combinations for BB2672-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BB2672-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Conexibacter_woesei_DSM_14684 1 1
Streptomyces_violaceusniger_Tu_4113 2 2
Arthrobacter_chlorophenolicus_A6 2 2
Thermomicrobium_roseum_DSM_5159 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Ilyobacter_polytropus_DSM_2926 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Pseudogulbenkiania_sp._NH8B 1 1
Methylibium_petroleiphilum_PM1 1 1
Burkholderia_phytofirmans_PsJN 3 3
Burkholderia_xenovorans_LB400 5 5
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 2 2
Burkholderia_gladioli_BSR3 2 2
Burkholderia_glumae_BGR1 1 1
Verminephrobacter_eiseniae_EF01-2 3 3
Polaromonas_sp._JS666 2 2
Variovorax_paradoxus_S110 3 3
Acidovorax_sp._KKS102 2 2
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Collimonas_fungivorans_Ter331 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Bordetella_avium_197N 1 1
Bordetella_pertussis_Tohama_I 1 1
Bordetella_parapertussis_12822 2 2
Bordetella_bronchiseptica_RB50 2 2
Achromobacter_xylosoxidans_A8 3 3
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 1 1
Jannaschia_sp._CCS1 1 1
Ruegeria_pomeroyi_DSS-3 3 3
Roseobacter_litoralis_Och_149 5 5
Roseobacter_denitrificans_OCh_114 2 2
Magnetospirillum_magneticum_AMB-1 2 2
Azospirillum_sp._B510 1 1
Acidiphilium_multivorum_AIU301 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
alpha_proteobacterium_HIMB5 1 1
Xanthobacter_autotrophicus_Py2 2 2
Azorhizobium_caulinodans_ORS_571 2 2
Methylobacterium_sp._4-46 1 1
Methylobacterium_nodulans_ORS_2060 2 2
Sinorhizobium_fredii_NGR234 1 1
Sinorhizobium_medicae_WSM419 2 2
Sinorhizobium_meliloti_AK83 1 1
Rhizobium_etli_CIAT_652 1 1
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Agrobacterium_tumefaciens_str._C58 2 2
Agrobacterium_radiobacter_K84 3 3
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_opportunistum_WSM2075 4 4
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 5 5
Mesorhizobium_loti_MAFF303099 2 2
Hyphomicrobium_sp._MC1 1 1
Oligotropha_carboxidovorans_OM4 2 2
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Pseudomonas_sp._TKP 2 2
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2 2
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_fulva_12-X 2 2
Pseudomonas_putida_F1 1 1
Pseudomonas_fluorescens_SBW25 2 2
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_sp._VLB120 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Acinetobacter_sp._ADP1 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1 1
Streptomyces_rapamycinicus_NRRL_5491 2 2
Corynebacterium_terpenotabidum_Y-11 2 2
Burkholderia_phenoliruptrix_BR3459a 4 4
Pandoraea_pnomenusa_3kgm 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_sp._CCGE1003 2 2
Burkholderia_sp._CCGE1001 4 4
Burkholderia_sp._KJ006 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Variovorax_paradoxus_B4 3 3
Variovorax_paradoxus_EPS 2 2
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_Bpp5 2 2
Bordetella_bronchiseptica_MO149 2 2
Bordetella_bronchiseptica_253 2 2
Phaeobacter_gallaeciensis_DSM_17395 1 1
Phaeobacter_gallaeciensis_DSM_26640 1 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Octadecabacter_antarcticus_307 3 3
Paracoccus_aminophilus_JCM_7686 1 1
Candidatus_Pelagibacter_ubique_HTCC1062 1 1
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_GR4 1 1
Sinorhizobium_meliloti_Rm41 1 1
Sinorhizobium_meliloti_SM11 1 1
Sinorhizobium_meliloti_BL225C 1 1
Sinorhizobium_meliloti_1021 1 1
Rhizobium_etli_CFN_42 2 2
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Mesorhizobium_australicum_WSM2073 3 3
Oligotropha_carboxidovorans_OM5 2 2
Oligotropha_carboxidovorans_OM5 2 2
Rhodopseudomonas_palustris_HaA2 2 2
Bradyrhizobium_sp._S23321 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Serratia_marcescens_FGI94 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 2 2
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 2 2
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 1 1

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Others
Genome     Number   Proteins
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
NCBI_plasmid_sequences_(Plasmids) 25 25
STRING_v9.0.5_(STRING) 102 102
Uniprot_2018_03_genome 2822 2821
NCBI_2017_08_genome 7969 7968
Protein_Data_Bank_(all_PDB_sequenc) 4 4
TargetDB__(Targets) 11 11
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 12 12
PDB_chains_(SCOP_1.75)_(PDB) 2 2

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