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Domain combinations for VPA0735-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a VPA0735-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Oikopleura_dioica 1 1
Adineta_vaga 2 2
Caenorhabditis_japonica_ 3 3
Proterospongia_sp._ATCC_50818_ 1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Fusarium_graminearum_ 1 1
Trichoderma_virens_Gv29-8_ 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 2 2
Aspergillus_acidus_v1.0 1 1
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_flavus_NRRL3357_ 2 2
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlamydomonas_reinhardtii_4.0 4 4
Symbiodinium_minutum_clade_B1_v1.2 3 3
Emiliania_huxleyi_CCMP1516_ 4 4
Acaryochloris_marina_MBIC11017 1 1
Synechococcus_elongatus_PCC_7942 1 1
Microcystis_aeruginosa_NIES-843 1 1
Rivularia_sp._PCC_7116 1 1
Conexibacter_woesei_DSM_14684 1 1
Olsenella_uli_DSM_7084 1 1
Nakamurella_multipartita_DSM_44233 3 3
Modestobacter_marinus 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Frankia_sp._EAN1pec 2 2
Frankia_alni_ACN14a 1 1
Kitasatospora_setae_KM-6054 4 4
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Salinispora_arenicola_CNS-205 1 1
Gordonia_sp._KTR9 3 3
Rhodococcus_jostii_RHA1 2 2
Rhodococcus_equi_103S 2 2
Rhodococcus_opacus_B4 2 2
Rhodococcus_erythropolis_PR4 5 5
Nocardia_cyriacigeorgica_GUH-2 2 2
Nocardia_farcinica_IFM_10152 2 2
Mycobacterium_abscessus_ATCC_19977 2 2
Mycobacterium_sp._JLS 4 3
Mycobacterium_intracellulare_ATCC_13950 1 1
Mycobacterium_avium_104 2 2
Mycobacterium_vanbaalenii_PYR-1 3 3
Mycobacterium_rhodesiae_NBB3 4 4
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_gilvum_PYR-GCK 6 6
Mycobacterium_chubuense_NBB4 2 2
Mycobacterium_marinum_M 2 2
Mycobacterium_smegmatis_str._MC2_155 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Acetobacterium_woodii_DSM_1030 3 3
[Ruminococcus]_torques 1 1
Roseburia_intestinalis 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 3 3
Listeria_innocua_Clip11262 2 2
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 2 2
Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1
Niastella_koreensis_GR20-10 1 1
Paludibacter_propionicigenes_WB4 1 1
Odoribacter_splanchnicus_DSM_20712 1 1
Prevotella_ruminicola_23 1 1
Solitalea_canadensis_DSM_3403 3 3
Flavobacterium_johnsoniae_UW101 2 2
Parachlamydia_acanthamoebae_UV-7 1 1
Planctomyces_brasiliensis_DSM_5305 4 4
Planctomyces_limnophilus_DSM_3776 2 2
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Coraliomargarita_akajimensis_DSM_45221 4 4
Mesotoga_prima_MesG1.Ag.4.2 3 3
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Sebaldella_termitidis_ATCC_33386 2 2
Bdellovibrio_bacteriovorus_HD100 2 2
Sulfurovum_sp._NBC37-1 1 1
Desulfomonile_tiedjei_DSM_6799 3 3
Desulfobacterium_autotrophicum_HRM2 2 2
Desulfomicrobium_baculatum_DSM_4028 1 1
Desulfovibrio_magneticus_RS-1 3 3
Myxococcus_xanthus_DK_1622 1 1
Thauera_sp._MZ1T 1 1
Azoarcus_sp._KH32C 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2 2
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 6 6
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Ralstonia_eutropha_JMP134 10 10
Cupriavidus_taiwanensis_LMG_19424 7 7
Cupriavidus_metallidurans_CH34 9 9
Cupriavidus_necator_N-1 5 5
Ralstonia_eutropha_H16 4 4
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Burkholderia_glumae_BGR1 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Delftia_sp._Cs1-4 2 2
Delftia_acidovorans_SPH-1 2 2
Comamonas_testosteroni_CNB-2 2 2
Janthinobacterium_sp._Marseille 3 3
Bordetella_petrii_DSM_12804 2 2
Bordetella_avium_197N 1 1
Bordetella_parapertussis_12822 3 3
Bordetella_bronchiseptica_RB50 5 5
Achromobacter_xylosoxidans_A8 5 5
Achromobacter_xylosoxidans 3 3
Parvularcula_bermudensis_HTCC2503 1 1
Caulobacter_sp._K31 1 1
Caulobacter_crescentus_NA1000 1 1
Caulobacter_segnis_ATCC_21756 1 1
Phenylobacterium_zucineum_HLK1 1 1
Novosphingobium_sp._PP1Y 2 2
Novosphingobium_aromaticivorans_DSM_12444 4 4
Sphingobium_japonicum_UT26S 1 1
Sphingomonas_sp._MM-1 3 3
Sphingomonas_wittichii_RW1 3 3
Maricaulis_maris_MCS10 2 2
Hyphomonas_neptunium_ATCC_15444 2 2
Pseudovibrio_sp._FO-BEG1 1 1
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 1 1
Polymorphum_gilvum_SL003B-26A1 1 1
Starkeya_novella_DSM_506 1 1
Xanthobacter_autotrophicus_Py2 5 5
Azorhizobium_caulinodans_ORS_571 2 2
Methylobacterium_chloromethanicum_CM4 2 2
Methylobacterium_extorquens_AM1 3 3
Methylobacterium_sp._4-46 4 4
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 3 3
Methylobacterium_radiotolerans_JCM_2831 1 1
Parvibaculum_lavamentivorans_DS-1 6 6
Ochrobactrum_anthropi_ATCC_49188 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 2 2
Sinorhizobium_medicae_WSM419 6 6
Sinorhizobium_meliloti_AK83 5 5
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 2 2
Rhizobium_etli_CIAT_652 2 2
Rhizobium_leguminosarum_bv._viciae_3841 8 8
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_radiobacter_K84 1 1
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 4 4
Methylocella_silvestris_BL2 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 4 3
Pelagibacterium_halotolerans_B2 1 1
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 4 4
Hyphomicrobium_denitrificans_ATCC_51888 4 4
Oligotropha_carboxidovorans_OM4 1 1
Rhodopseudomonas_palustris_BisA53 2 2
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 4 4
Bradyrhizobium_japonicum_USDA_110 4 4
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Bartonella_tribocorum_CIP_105476 1 1
Bartonella_clarridgeiae_73 1 1
Bartonella_henselae_str._Houston-1 2 2
Bartonella_grahamii_as4aup 1 1
Bartonella_quintana_str._Toulouse 1 1
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_fischeri_MJ11 7 7
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 3 3
Vibrio_splendidus_LGP32 2 2
Vibrio_vulnificus_MO6-24/O 2 2
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 2 2
Shewanella_pealeana_ATCC_700345 1 1
Colwellia_psychrerythraea_34H 5 5
Nitrosococcus_watsonii_C-113 3 3
Legionella_longbeachae_NSW150 1 1
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Pseudomonas_sp._TKP 2 2
Pseudomonas_sp._UW4 5 5
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_protegens_Pf-5 5 5
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_paludicola_SANAE 2 2
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanosphaerula_palustris_E1-9c 4 4
Methanoregula_boonei_6A8 1 1
Methanospirillum_hungatei_JF-1 1 1
Archaeoglobus_fulgidus_DSM_4304 2 2

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Strains
Genome     Number   Proteins
Synechococcus_sp._CC9605 5 5
Synechococcus_sp._WH_7803 5 5
Prochlorococcus_marinus_str._MIT_9313 2 2
Prochlorococcus_marinus_str._MIT_9303 5 4
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Frankia_sp._CcI3 1 1
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_fulvissimus_DSM_40593 1 1
Rhodococcus_erythropolis_CCM2595 4 4
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_sp._JDM601 3 3
Mycobacterium_abscessus_subsp._bolletii_50594 2 2
Mycobacterium_sp._KMS 3 3
Mycobacterium_sp._MCS 3 3
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_intracellulare_MOTT-64 1 1
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 2 2
Mycobacterium_gilvum_Spyr1 4 4
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Listeria_monocytogenes_EGD_sequence 3 3
Listeria_monocytogenes_N53-1 3 3
Listeria_monocytogenes_La111 3 3
Listeria_monocytogenes_serotype_4b_str._LL195 2 2
Listeria_monocytogenes_07PF0776 2 2
Listeria_monocytogenes_M7 2 2
Listeria_monocytogenes_J1-220 2 2
Listeria_monocytogenes_J1816 2 2
Listeria_monocytogenes_SLCC2376 2 2
Listeria_monocytogenes_SLCC5850 3 3
Listeria_monocytogenes_ATCC_19117 2 2
Listeria_monocytogenes_L312 2 2
Listeria_monocytogenes_SLCC2479 3 3
Listeria_monocytogenes_SLCC7179 3 3
Listeria_monocytogenes_SLCC2540 3 3
Listeria_monocytogenes_SLCC2378 2 2
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 2 2
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 3 3
Listeria_monocytogenes_serotype_7_str._SLCC2482 2 2
Listeria_monocytogenes_08-5578 3 3
Listeria_monocytogenes_08-5923 3 3
Listeria_monocytogenes_L99 2 2
Listeria_monocytogenes_HCC23 2 2
Listeria_monocytogenes_10403S 3 3
Listeria_monocytogenes_J0161 3 3
Listeria_monocytogenes_Finland_1998 3 3
Listeria_monocytogenes_FSL_R2-561 3 3
Listeria_monocytogenes_serotype_4b_str._F2365 2 2
Listeria_monocytogenes_EGD-e 3 3
Singulisphaera_acidiphila_DSM_18658 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 3 3
Myxococcus_stipitatus_DSM_14675 2 2
Burkholderia_phenoliruptrix_BR3459a 1 1
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_sp._CCGE1003 2 2
Burkholderia_sp._CCGE1001 3 3
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 1 1
Burkholderia_mallei_ATCC_23344 1 1
Burkholderia_lata 2 2
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 1 1
Variovorax_paradoxus_B4 3 3
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 2 2
Bordetella_bronchiseptica_MO149 3 3
Bordetella_bronchiseptica_253 3 3
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 3 3
Caulobacter_crescentus_CB15 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 2 2
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 2 2
Sinorhizobium_meliloti_2011 5 5
Sinorhizobium_meliloti_GR4 11 11
Sinorhizobium_meliloti_Rm41 7 7
Sinorhizobium_meliloti_SM11 8 8
Sinorhizobium_meliloti_BL225C 7 7
Sinorhizobium_meliloti_1021 10 10
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_tropici_CIAT_899 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 4 4
Mesorhizobium_australicum_WSM2073 1 1
Hyphomicrobium_nitrativorans_NL23 1 1
Hyphomicrobium_denitrificans_1NES1 2 2
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_DX-1 2 2
Rhodopseudomonas_palustris_TIE-1 2 2
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB5 2 2
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 2 2
Bradyrhizobium_sp._S23321 7 7
Bradyrhizobium_sp._BTAi1 2 2
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 7 7
Bartonella_australis_Aust/NH1 1 1
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 1 1
Bartonella_quintana_RM-11 1 1
Vibrio_fischeri_ES114 7 7
Vibrio_parahaemolyticus_BB22OP 5 5
Vibrio_vulnificus_YJ016 2 2
Shewanella_sp._ANA-3 1 1
Alcanivorax_dieselolei_B5 1 1
Serratia_sp._AS13 1 1
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 2 2
Enterobacter_cloacae_SCF1 2 2
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2 2
Pseudomonas_denitrificans_ATCC_13867 3 3
Pseudomonas_putida_NBRC_14164 2 2
Pseudomonas_putida_GB-1 5 5
Pseudomonas_protegens_CHA0 2 2
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_resinovorans_NBRC_106553 7 7
Pseudomonas_aeruginosa_DK2 1 1
Methanobacterium_sp._SWAN-1 1 1

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Others
Genome     Number   Proteins
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 61 61
NCBI_2017_08_genome 24367 24221
TargetDB__(Targets) 41 41
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 42 42
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 9 9
STRING_v9.0.5_(STRING) 399 396
Uniprot_2018_03_genome 8214 8108

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