SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Viral glycoprotein ectodomain-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Viral glycoprotein ectodomain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 1
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Caenorhabditis_japonica_ 13 13
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 17 17

Others
Genome     Number   Proteins
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
NCBI_2017_08_genome 210 207
UniProt__viral_sequences_(Viral) 3323 3322
Uniprot_2018_03_genome 8742 8728
PDB_chains_(SCOP_1.75)_(PDB) 3 3
TargetDB__(Targets) 3 3
STRING_v9.0.5_(STRING) 37 36
Protein_Data_Bank_(all_PDB_sequenc) 61 61
NCBI_viral_sequences_(Viral) 93 93
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 202 189

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