SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for E6 C-terminal domain-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a E6 C-terminal domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Mesorhizobium_sp._BNC1 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Aciduliprofundum_boonei_T469 1 1

Strains
Genome     Number   Proteins
Rhodobacter_sphaeroides_2.4.1 1 1

Others
Genome     Number   Proteins
UniProt__viral_sequences_(Viral) 1162 606
Uniprot_2018_03_genome 4528 2351
PDB_chains_(SCOP_1.75)_(PDB) 1 1
TargetDB__(Targets) 1 1
STRING_v9.0.5_(STRING) 4 4
Protein_Data_Bank_(all_PDB_sequenc) 16 11
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 19 19
NCBI_viral_sequences_(Viral) 228 117
NCBI_2017_08_genome 338 202

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