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Domain combinations for PspA lactotransferrin-binding region superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PspA lactotransferrin-binding region domain in that genome.

Complete genomes
Genome     Number   Proteins
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Poecilia_formosa_76   (Amazon molly)   1 1
Adineta_vaga 1 1
Lottia_gigantea_   (Owl limpet)   3 3
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_ananassae_1.3 1 1
Megaselia_scalaris_22 1 1
Sarcoptes_scabiei 1 1
Caenorhabditis_brenneri_ 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Podospora_anserina_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Pyrenophora_tritici-repentis_ 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 2 2
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   4 4
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Malus_domestica_v196   (Apple)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   1 1
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Amborella_trichopoda_22 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Leishmania_mexicana_2.4 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Perkinsus_marinus_ATCC_50983_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 1 1
Trichomonas_vaginalis_ 34 28
Cyanothece_sp._PCC_8802 1 1
Eggerthella_sp._YY7918 1 1
Mycobacterium_vanbaalenii_PYR-1 1 1
Clostridium_perfringens_ATCC_13124 1 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_gasseri_ATCC_33323 1 1
Streptococcus_pneumoniae_P1031 1 1
Staphylococcus_lugdunensis_HKU09-01 1 1
Runella_slithyformis_DSM_19594 1 1
Bacteroides_helcogenes_P_36-108 1 1
Chlamydophila_caviae_GPIC 1 1
Sulfurihydrogenibium_sp._YO3AOP1 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Ruegeria_pomeroyi_DSS-3 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 1 1
Pelagibacterium_halotolerans_B2 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Thermococcus_gammatolerans_EJ3 1 1
Pyrococcus_sp._ST04 1 1
Halorhabdus_utahensis_DSM_12940 1 1

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Strains
Genome     Number   Proteins
Cyanothece_sp._PCC_8801 1 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_DPC_6026 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Streptococcus_pneumoniae_A026 3 1
Streptococcus_pneumoniae_ST556 3 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_SPN994039 3 1
Streptococcus_pneumoniae_SPN994038 3 1
Streptococcus_pneumoniae_SPN034183 3 1
Streptococcus_pneumoniae_SPN034156 1 1
Streptococcus_pneumoniae_INV104 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_OXC141 3 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 3 1
Streptococcus_pneumoniae_TCH8431/19A 3 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_G54 3 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 2 1
Streptococcus_pneumoniae_Taiwan19F-14 3 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_670-6B 2 2
Streptococcus_pneumoniae_R6 1 1
Streptococcus_pneumoniae_TIGR4 3 1
Staphylococcus_pasteuri_SP1 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Nonlabens_dokdonensis_DSW-6 1 1
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 2 2
Pseudomonas_syringae_pv._syringae_B728a 1 1
Sulfolobus_solfataricus_98/2 1 1
Halorhabdus_tiamatea_SARL4B 1 1

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Longest transcript per gene
Genome     Number   Proteins
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1

Others
Genome     Number   Proteins
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 1 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
STRING_v9.0.5_(STRING) 81 68
Uniprot_2018_03_genome 1680 1371
NCBI_2017_08_genome 14535 9144
Protein_Data_Bank_(all_PDB_sequenc) 2 2
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2 2
PDB_chains_(SCOP_1.75)_(PDB) 1 1
NCBI_viral_sequences_(Viral) 2 2
TargetDB__(Targets) 6 6
Protozoadb_2010_08_(Protozoadb) 70 58

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