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Domain combinations for ARID-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a ARID-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   50 50
Pan_troglodytes_76_2.1.4   (Chimpanzee)   15 15
Gorilla_gorilla_76_3.1   (Western gorilla)   21 21
Pongo_abelii_76_2   (Sumatran orangutan)   15 15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15 15
Papio_anubis_76   (Olive baboon)   15 15
Macaca_mulatta_76_1   (Rhesus monkey)   25 25
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   36 36
Otolemur_garnettii_76_3   (Small-eared galago)   13 13
Microcebus_murinus_76_1   (Gray mouse lemur)   12 12
Rattus_norvegicus_76_5.0   (Norway rat)   18 18
Mus_musculus_76_38   (House mouse)   47 46
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   13 13
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12 12
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 13
Cavia_porcellus_76_3   (Domestic guinea pig)   10 10
Oryctolagus_cuniculus_76_2   (Rabbit)   14 14
Ochotona_princeps_76   (American pika)   10 10
Tupaia_belangeri_76   (Northern tree shrew)   10 10
Sus_scrofa_76_10.2   (Pig)   14 14
Bos_taurus_76_3.1   (Cattle)   16 16
Ovis_aries_76_3.1   (Sheep)   15 15
Vicugna_pacos_76_1   (Alpaca)   9 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14 14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15 15
Ailuropoda_melanoleuca_76_1   (Giant panda)   15 15
Canis_familiaris_76_3.1   (Dog)   19 19
Felis_catus_76_6.2   (Domestic cat)   14 14
Equus_caballus_76_2   (Horse)   15 15
Myotis_lucifugus_76_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_76_1   (Large flying fox)   13 13
Sorex_araneus_76_1   (European shrew)   11 11
Erinaceus_europaeus_76   (Western European hedgehog)   11 11
Procavia_capensis_76_1   (Cape rock hyrax)   14 14
Loxodonta_africana_76_3   (African savanna elephant)   24 24
Echinops_telfairi_76   (Small Madagascar hedgehog)   10 10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   16 16
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10 10
Macropus_eugenii_76_1.0   (Tammar wallaby)   14 14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   16 16
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   12 12
Ornithorhynchus_anatinus_76_5   (Platypus)   15 15
Saccoglossus_kowalevskii_v3.0 30 30
Petromyzon_marinus_76_7.0   (Sea lamprey)   9 9
Meleagris_gallopavo_76_2   (Turkey)   13 13
Gallus_gallus_76_4   (Chicken)   13 13
Anas_platyrhynchos_76_1.0   (Mallard)   11 11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   12 12
Ficedula_albicollis_76_1.0   (Collared flycatcher)   13 13
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   12 12
Anolis_carolinensis_76_2.0   (Green anole)   15 15
Xenopus_laevis_   (African clawed frog)   10 10
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   15 15
Latimeria_chalumnae_76_1   (Coelacanth)   18 18
Lepisosteus_oculatus_76   (Spotted gar)   19 19
Gadus_morhua_76_1   (Atlantic cod)   19 19
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   19 19
Takifugu_rubripes_76_4   (Torafugu)   53 53
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   15 15
Oryzias_latipes_76_1   (Japanese medaka)   16 16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   18 18
Poecilia_formosa_76   (Amazon molly)   18 18
Oreochromis_niloticus_76_1.0   (Nile tilapia)   27 27
Astyanax_mexicanus_76   (Mexican tetra)   21 21
Danio_rerio_76_9   (Zebrafish)   32 32
Oikopleura_dioica 5 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11 11
Ciona_intestinalis_76   (Vase tunicate)   5 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   9 9
Adineta_vaga 16 16
Octopus_bimaculoides_280 14 14
Crassostrea_gigas_22   (Pacific oyster)   7 7
Lottia_gigantea_   (Owl limpet)   6 6
Helobdella_robusta_ 10 10
Capitella_sp._I_ 7 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 8
Heliconius_melpomene_   (Postman butterfly)   7 7
Bombyx_mori_   (Domestic silkworm)   4 4
Nasonia_vitripennis_   (Jewel wasp)   6 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13 13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7 7
Linepithema_humile_v1.1   (Argentine ant)   7 7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6 6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7 7
Atta_cephalotes_v1.1 7 7
Camponotus_floridanus_v3.3   (Florida carpenter ant)   7 7
Lucilia_cuprina   (Australian sheep blowfly)   6 6
Drosophila_grimshawi_1.3 7 7
Drosophila_willistoni_1.3 13 13
Drosophila_pseudoobscura_2.13 6 6
Drosophila_persimilis_1.3 5 5
Drosophila_suzukii 5 5
Drosophila_yakuba_1.3 6 6
Drosophila_simulans_1.3 6 6
Drosophila_sechellia_1.3 7 7
Drosophila_melanogaster_76_5   (Fruit fly)   15 15
Drosophila_erecta_1.3 6 6
Drosophila_ananassae_1.3 6 6
Drosophila_virilis_1.2 6 6
Drosophila_mojavensis_1.3 7 7
Megaselia_scalaris_22 4 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   10 10
Anopheles_darlingi_22   (American malaria mosquito)   5 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   9 9
Tribolium_castaneum_3.0   (Red flour beetle)   7 7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   7 7
Rhodnius_prolixus_22 7 7
Daphnia_pulex_   (Common water flea)   6 6
Strigamia_maritima_22 7 7
Sarcoptes_scabiei 5 5
Tetranychus_urticae_   (Two-spotted spider mite)   11 11
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 5
Pristionchus_pacificus_ 5 5
Meloidogyne_incognita_   (Southern root-knot nematode)   6 6
Meloidogyne_hapla_ 4 4
Onchocerca_volvulus_22 4 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   12 12
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 9 9
Caenorhabditis_remanei_ 6 6
Caenorhabditis_elegans_76_235   (Roundworm)   6 6
Caenorhabditis_briggsae_2 5 5
Trichinella_spiralis_22 5 5
Hymenolepis_microstoma_ 7 7
Echinococcus_multilocularis_ 6 6
Echinococcus_granulosus_ 6 6
Taenia_solium_   (Pork tapeworm)   6 6
Schistosoma_mansoni_ 8 8
Mnemiopsis_leidyi   (Sea walnut)   5 5
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 8 8
Nematostella_vectensis_1.0   (Starlet sea anemone)   6 6
Hydra_vulgaris 6 6
Amphimedon_queenslandica 5 5
Trichoplax_adhaerens_ 6 6
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Conidiobolus_coronatus_NRRL28638_v1.0 4 4
Mortierella_verticillata_NRRL_6337_ 4 4
Phycomyces_blakesleeanus_ 4 4
Rhizopus_oryzae_RA_99-880_ 2 2
Mucor_circinelloides_ 2 2
Rhizomucor_miehei_CAU432_ 3 3
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 3 3
Ustilago_maydis_ 3 3
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Melampsora_laricis-populina_ 2 2
Rhodotorula_graminis_WP1_v1.0 3 3
Sporobolomyces_roseus_IAM_13481_ 1 1
Microbotryum_violaceum_22 5 5
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 6 6
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 4 4
Pisolithus_microcarpus_441_v1.0 3 3
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 4 4
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4 4
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 6 5
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 3 3
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 4 4
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 7 7
Postia_placenta_ 6 6
Wolfiporia_cocos_MD-104_SS10__v1.0 5 5
Fomitopsis_pinicolav1.0 6 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 6 6
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 5 5
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 4 4
Apiospora_montagnei_NRRL_25634_v1.0 4 4
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 4 4
Podospora_anserina_ 3 3
Sporotrichum_thermophile_ATCC_42464_ 4 4
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 4 4
Neurospora_discreta_FGSC_8579_ 4 4
Neurospora_crassa_OR74A_ 4 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   4 4
Verticillium_albo-atrum_VaMs.102_ 4 4
Verticillium_dahliae_VdLs.17_ 4 4
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 2 2
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 5 5
Trichoderma_atroviride_ 4 4
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 4 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 4
Botrytis_cinerea_B05.10_ 4 4
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 4 4
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 3 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 4 4
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 3 3
Trichophyton_equinum_CBS_127.97_ 3 3
Trichophyton_verrucosum_HKI_0517_ 3 3
Arthroderma_benhamiae_CBS_112371_ 3 3
Trichophyton_tonsurans_CBS_112818_ 3 3
Trichophyton_rubrum_CBS_118892_ 3 3
Uncinocarpus_reesii_1704_ 3 3
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 2 2
Aspergillus_flavus_NRRL3357_ 2 2
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 2 2
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 2 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 3 3
Candida_tropicalis_MYA-3404_ 3 3
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 2 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 2 2
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 3 3
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 2 2
Yarrowia_lipolytica_CLIB122 3 3
Candida_lusitaniae_ATCC_42720_ 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 2 2
Lachancea_kluyveri_ 2 2
Kluyveromyces_waltii 2 2
Ashbya_gossypii_ATCC_10895_ 2 2
Zygosaccharomyces_rouxii_ 2 2
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 2 2
Schizosaccharomyces_cryophilus_OY26_22 4 4
Schizosaccharomyces_octosporus_yFS286_ 4 4
Schizosaccharomyces_japonicus_yFS275_ 4 4
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 3 3
Spizellomyces_punctatus_DAOM_BR117_ 4 4
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 16 16
Pinus_taeda   (Loblolly pine)   15 15
Picea_abies   (Norway spruce)   10 10
Eucalyptus_grandis_v201   (Rose gum)   14 14
Theobroma_cacao_B97-61/B2_v1   (Cacao)   12 12
Gossypium_raimondii_v221 46 46
Citrus_clementina_v165 17 17
Citrus_sinensis_v154   (Sweet orange)   31 31
Thellungiella_halophila_v173 15 15
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   17 17
Capsella_rubella_v183 16 16
Arabidopsis_lyrata_   (Lyrate rockcress)   8 8
Arabidopsis_thaliana_10   (Thale cress)   13 13
Carica_papaya_   (Papaya)   8 8
Medicago_truncatula_   (Barrel medic)   33 33
Phaseolus_vulgaris_v186   (French bean)   17 17
Glycine_max_v109   (Soybean)   22 22
Cucumis_sativus_v122   (Cucumber)   14 14
Fragaria_vesca_   (Wild strawberry)   12 12
Malus_domestica_v196   (Apple)   24 24
Prunus_persica_v139   (Peach)   9 9
Linum_usitatissimum_v200   (Flax)   15 15
Manihot_esculenta_v147   (Cassava)   13 13
Populus_trichocarpa_v156   (Black cottonwood)   14 14
Vitis_vinifera_   (Wine grape)   10 10
Mimulus_guttatus_v140   (Spotted monkey flower)   11 11
Solanum_lycopersicum_v.2.3   (Tomato)   14 14
Solanum_tuberosum_   (Potato)   15 15
Actinidia_chinensis_Hongyang_ 16 16
Aquilegia_coerulea_v195 13 13
Triticum_urartu_22 5 5
Triticum_aestivum_22   (Bread wheat)   14 14
Aegilops_tauschii_22 5 5
Brachypodium_distachyon_   (Stiff brome)   12 12
Oryza_barthii_22   (African wild rice)   9 9
Oryza_meridionalis_22 12 12
Oryza_glumaepatula_22 14 14
Oryza_glaberrima   (African rice)   7 7
Oryza_punctata_22 14 14
Oryza_nivara_22 13 13
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   17 17
Oryza_sativa_v193   (Rice)   16 16
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13 13
Panicum_virgatum_v202   (Switchgrass)   12 12
Setaria_italica_v164   (Foxtail millet)   11 11
Zea_mays_subsp._mays_   (Maize)   18 18
Zea_mays_v181   (Maize)   16 16
Sorghum_bicolor_   (Sorghum)   7 7
Musa_balbisiana   (Balbis banana)   14 14
Musa_acuminata_22   (Wild Malaysian banana)   12 12
Amborella_trichopoda_22 8 8
Physcomitrella_patens 8 8
Coccomyxa_subellipsoidea_sp._C-169_v2 11 11
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 3 3
Chlorella_vulgaris_ 10 10
Volvox_carteri_f._nagariensis_ 4 4
Volvox_carteri_v199 3 3
Chlamydomonas_reinhardtii_4.0 5 5
Ostreococcus_sp._RCC809_ 3 3
Ostreococcus_lucimarinus_CCE9901_ 7 7
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 5 5
Micromonas_pusilla_CCMP1545_v3.0 8 8
Cyanidioschyzon_merolae_strain_10D_22 4 4
Cyanidioschyzon_merolae 4 4
Porphyridium_purpureum_02_2012 3 3
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 9 9
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 2 2
Ectocarpus_siliculosus 2 2
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 2 2
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 3 3
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 2 2
Paramecium_tetraurelia_ 2 2
Tetrahymena_thermophila_SB210_1_ 2 2
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Naegleria_gruberi_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 6 5
Emiliania_huxleyi_CCMP1516_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   18 18
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   12 12
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9 9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   5 5
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 2 2
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 3 3
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 2 2
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 2 2
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 5 5
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   12 12
Hordeum_vulgare_22   (Domesticated barley)   12 12
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 8
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   15 15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15 15
Gorilla_gorilla_69_3.1   (Western gorilla)   14 14
Pongo_abelii_69_2   (Sumatran orangutan)   14 14
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 14
Macaca_mulatta_69_1   (Rhesus monkey)   13 13
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   16 16
Otolemur_garnettii_69_3   (Small-eared galago)   13 13
Microcebus_murinus_69_1   (Gray mouse lemur)   12 12
Rattus_norvegicus_69_3.4   (Norway rat)   13 13
Mus_musculus_69_38   (House mouse)   16 15
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   13 13
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   12 12
Cavia_porcellus_69_3   (Domestic guinea pig)   10 10
Oryctolagus_cuniculus_69_2   (Rabbit)   13 13
Ochotona_princeps_69   (American pika)   10 10
Tupaia_belangeri_69   (Northern tree shrew)   10 10
Sus_scrofa_69_10.2   (Pig)   12 12
Bos_taurus_69_3.1   (Cattle)   13 13
Vicugna_pacos_69_1   (Alpaca)   9 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14 14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   14 14
Ailuropoda_melanoleuca_69_1   (Giant panda)   14 14
Canis_familiaris_69_3.1   (Dog)   14 14
Felis_catus_69   (Domestic cat)   10 10
Equus_caballus_69_2   (Horse)   12 12
Myotis_lucifugus_69_2.0   (Little brown bat)   14 14
Pteropus_vampyrus_69_1   (Large flying fox)   13 13
Sorex_araneus_69_1   (European shrew)   11 11
Erinaceus_europaeus_69   (Western European hedgehog)   11 11
Procavia_capensis_69_1   (Cape rock hyrax)   14 14
Loxodonta_africana_69_3   (African savanna elephant)   13 13
Echinops_telfairi_69   (Small Madagascar hedgehog)   10 10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10 10
Macropus_eugenii_69_1.0   (Tammar wallaby)   14 14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13 13
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12 12
Ornithorhynchus_anatinus_69_5   (Platypus)   14 14
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_69_2   (Turkey)   12 12
Gallus_gallus_69_2   (Chicken)   11 11
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   12 12
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   11 11
Anolis_carolinensis_69_2.0   (Green anole)   13 13
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 12
Latimeria_chalumnae_69_1   (Coelacanth)   12 12
Gadus_morhua_69_1   (Atlantic cod)   15 15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   15 15
Takifugu_rubripes_69_4   (Torafugu)   17 17
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14 14
Oryzias_latipes_69_1   (Japanese medaka)   15 15
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   18 18
Oreochromis_niloticus_69_1.0   (Nile tilapia)   18 18
Danio_rerio_69_9   (Zebrafish)   18 18
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_69   (Vase tunicate)   5 5
Drosophila_melanogaster_69_5   (Fruit fly)   6 6
Caenorhabditis_elegans_69_215   (Roundworm)   5 5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   10 10

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   55 55
Homo_sapiens__(NCBI_version)   (Human)   24 24
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   16 15
Loa_loa_v3.3_(Request)   (Eye worm)   5 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 5
Moniliophthora_perniciosa_FA553__(Genome_survey) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 12 12
Malus_x_domestica_(Duplicate)   (Apple)   24 24
Ricinus_communis__(Early_assembly)   (Castor bean)   10 10
Nicotiana_benthamiana_0.4.4_(Early_draft) 21 21
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   14 14
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   14 14
Phoenix_dactylifera__(Early_draft)   (Date palm)   12 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 60 60
TargetDB__(Targets) 24 24
STRING_v9.0.5_(STRING) 698 691
Uniprot_2018_03_genome 9686 9654
Protein_Data_Bank_(all_PDB_sequenc) 25 25
NCBI_2017_08_genome 11804 11782
PDB_chains_(SCOP_1.75)_(PDB) 5 5
Protozoadb_2010_08_(Protozoadb) 17 17

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