SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for CRAL/TRIO N-terminal domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CRAL/TRIO N-terminal domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   34 34
Pan_troglodytes_76_2.1.4   (Chimpanzee)   13 13
Gorilla_gorilla_76_3.1   (Western gorilla)   13 13
Pongo_abelii_76_2   (Sumatran orangutan)   12 12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   12 12
Papio_anubis_76   (Olive baboon)   11 11
Macaca_mulatta_76_1   (Rhesus monkey)   14 14
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   21 21
Otolemur_garnettii_76_3   (Small-eared galago)   12 12
Microcebus_murinus_76_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_76_5.0   (Norway rat)   12 12
Mus_musculus_76_38   (House mouse)   23 23
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   9 9
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10 10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 12
Cavia_porcellus_76_3   (Domestic guinea pig)   10 10
Oryctolagus_cuniculus_76_2   (Rabbit)   12 12
Ochotona_princeps_76   (American pika)   9 9
Tupaia_belangeri_76   (Northern tree shrew)   7 7
Sus_scrofa_76_10.2   (Pig)   10 10
Bos_taurus_76_3.1   (Cattle)   13 13
Ovis_aries_76_3.1   (Sheep)   17 17
Vicugna_pacos_76_1   (Alpaca)   8 8
Tursiops_truncatus_76_1   (Bottlenose dolphin)   10 10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   11 11
Ailuropoda_melanoleuca_76_1   (Giant panda)   13 13
Canis_familiaris_76_3.1   (Dog)   10 10
Felis_catus_76_6.2   (Domestic cat)   10 10
Equus_caballus_76_2   (Horse)   11 11
Myotis_lucifugus_76_2.0   (Little brown bat)   11 11
Pteropus_vampyrus_76_1   (Large flying fox)   12 12
Sorex_araneus_76_1   (European shrew)   6 6
Erinaceus_europaeus_76   (Western European hedgehog)   9 9
Procavia_capensis_76_1   (Cape rock hyrax)   10 10
Loxodonta_africana_76_3   (African savanna elephant)   15 15
Echinops_telfairi_76   (Small Madagascar hedgehog)   10 10
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   18 18
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_76_1.0   (Tammar wallaby)   9 9
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   18 18
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11 11
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 35 35
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   10 10
Gallus_gallus_76_4   (Chicken)   11 11
Anas_platyrhynchos_76_1.0   (Mallard)   8 8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   8 8
Anolis_carolinensis_76_2.0   (Green anole)   8 8
Xenopus_laevis_   (African clawed frog)   23 23
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14 14
Latimeria_chalumnae_76_1   (Coelacanth)   10 10
Lepisosteus_oculatus_76   (Spotted gar)   12 12
Gadus_morhua_76_1   (Atlantic cod)   13 13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   14 14
Takifugu_rubripes_76_4   (Torafugu)   23 23
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   17 17
Oryzias_latipes_76_1   (Japanese medaka)   16 16
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   13 13
Poecilia_formosa_76   (Amazon molly)   13 13
Oreochromis_niloticus_76_1.0   (Nile tilapia)   16 16
Astyanax_mexicanus_76   (Mexican tetra)   12 12
Danio_rerio_76_9   (Zebrafish)   14 14
Oikopleura_dioica 4 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   14 14
Ciona_intestinalis_76   (Vase tunicate)   9 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   14 13
Adineta_vaga 23 23
Octopus_bimaculoides_280 11 11
Crassostrea_gigas_22   (Pacific oyster)   6 6
Lottia_gigantea_   (Owl limpet)   6 6
Helobdella_robusta_ 7 7
Capitella_sp._I_ 17 17
Danaus_plexippus_OGS1.0   (Monarch butterfly)   39 38
Heliconius_melpomene_   (Postman butterfly)   26 23
Bombyx_mori_   (Domestic silkworm)   21 21
Nasonia_vitripennis_   (Jewel wasp)   22 22
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   30 30
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   18 18
Linepithema_humile_v1.1   (Argentine ant)   22 22
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   18 18
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19 19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 21
Atta_cephalotes_v1.1 17 17
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22 22
Lucilia_cuprina   (Australian sheep blowfly)   31 23
Drosophila_grimshawi_1.3 29 29
Drosophila_willistoni_1.3 28 28
Drosophila_pseudoobscura_2.13 28 28
Drosophila_persimilis_1.3 26 26
Drosophila_suzukii 25 21
Drosophila_yakuba_1.3 27 27
Drosophila_simulans_1.3 22 22
Drosophila_sechellia_1.3 28 28
Drosophila_melanogaster_76_5   (Fruit fly)   48 48
Drosophila_erecta_1.3 27 27
Drosophila_ananassae_1.3 27 27
Drosophila_virilis_1.2 29 29
Drosophila_mojavensis_1.3 28 28
Megaselia_scalaris_22 7 7
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   54 54
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   69 66
Anopheles_darlingi_22   (American malaria mosquito)   37 34
Anopheles_gambiae_49_3j   (African malaria mosquito)   46 46
Tribolium_castaneum_3.0   (Red flour beetle)   40 39
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19 19
Acyrthosiphon_pisum_   (Pea aphid)   22 22
Rhodnius_prolixus_22 38 38
Daphnia_pulex_   (Common water flea)   38 37
Strigamia_maritima_22 13 12
Sarcoptes_scabiei 6 6
Tetranychus_urticae_   (Two-spotted spider mite)   28 28
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   30 29
Pristionchus_pacificus_ 3 3
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 4 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   5 5
Caenorhabditis_japonica_ 6 6
Caenorhabditis_brenneri_ 9 9
Caenorhabditis_remanei_ 8 8
Caenorhabditis_elegans_76_235   (Roundworm)   9 9
Caenorhabditis_briggsae_2 9 9
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 6 6
Echinococcus_multilocularis_ 10 10
Echinococcus_granulosus_ 10 10
Taenia_solium_   (Pork tapeworm)   9 9
Schistosoma_mansoni_ 7 7
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 3 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   9 9
Hydra_vulgaris 5 5
Amphimedon_queenslandica 7 7
Trichoplax_adhaerens_ 13 13
Proterospongia_sp._ATCC_50818_ 8 8
Monosiga_brevicollis_ 6 6
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 12 12
Conidiobolus_coronatus_NRRL28638_v1.0 14 14
Mortierella_verticillata_NRRL_6337_ 11 11
Phycomyces_blakesleeanus_ 8 8
Rhizopus_oryzae_RA_99-880_ 6 6
Mucor_circinelloides_ 9 9
Rhizomucor_miehei_CAU432_ 7 7
Malassezia_globosa_CBS_7966_ 10 10
Sporisorium_reilianum_22 7 7
Ustilago_maydis_ 7 7
Mixia_osmundae_IAM_14324_v1.0 9 9
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 10 10
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 10 10
Melampsora_laricis-populina_ 10 10
Rhodotorula_graminis_WP1_v1.0 4 4
Sporobolomyces_roseus_IAM_13481_ 5 5
Microbotryum_violaceum_22 6 6
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 9 9
Piloderma_croceum_F_1598_v1.0 7 7
Serpula_lacrymans_var._lacrymans_S7.9_ 5 5
Coniophora_puteana 7 7
Hydnomerulius_pinastri_v2.0 6 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 5 5
Pisolithus_microcarpus_441_v1.0 6 6
Pisolithus_tinctorius_Marx_270_v1.0 6 6
Scleroderma_citrinum_Foug_A_v1.0 6 6
Coprinopsis_cinerea_okayama7_130_v3 6 6
Pleurotus_ostreatus_   (Oyster mushroom)   6 6
Amanita_thiersii_Skay4041_v1.0 6 6
Amanita_muscaria_Koide_v1.0   (Fly agaric)   10 10
Galerina_marginata_v1.0 7 7
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 5 5
Agaricus_bisporus_var._bisporus_ 6 6
Schizophyllum_commune_ 5 5
Stereum_hirsutum_FP-91666_SS1__v1.0 6 6
Heterobasidion_annosum_ 5 5
Gloeophyllum_trabeumv1.0 5 5
Punctularia_strigosozonata_v1.0 6 6
Sebacina_vermifera_MAFF_305830_v1.0 4 4
Fomitiporia_mediterranea_v1.0 6 6
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 12 12
Wolfiporia_cocos_MD-104_SS10__v1.0 7 7
Fomitopsis_pinicolav1.0 7 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 7 7
Phanerochaete_chrysosporium_RP-78_2.1 8 8
Dichomitus_squalens 5 5
Trametes_versicolor_v1.0 6 6
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 5 5
Apiospora_montagnei_NRRL_25634_v1.0 6 6
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 5 5
Podospora_anserina_ 5 5
Sporotrichum_thermophile_ATCC_42464_ 5 5
Thielavia_terrestris_NRRL_8126_ 5 5
Chaetomium_globosum_CBS_148.51_ 6 6
Neurospora_tetrasperma_ 5 5
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 5 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 5
Verticillium_albo-atrum_VaMs.102_ 5 5
Verticillium_dahliae_VdLs.17_ 7 7
Acremonium_alcalophilumv_1.0 6 6
Glomerella_graminicola_22 5 5
Fusarium_graminearum_ 6 6
Nectria_haematococca_mpVI_ 6 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 6
Fusarium_verticillioides_7600_ 6 6
Trichoderma_asperellum_CBS_433.97_v1.0 6 6
Trichoderma_atroviride_ 5 5
Trichoderma_citrinoviride_v1.0 5 5
Trichoderma_reesei_1.2 5 5
Trichoderma_virens_Gv29-8_ 5 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 5 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   5 5
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 4 4
Didymella_exigua_CBS_183.55_v1.0 5 5
Leptosphaeria_maculans_22 4 4
Setosphaeria_turcica_v1.0 5 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5 5
Cochliobolus_victoriae_FI3_v1.0 5 5
Cochliobolus_carbonum_26-R-13_v1.0 5 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5 5
Alternaria_brassicicola_ 5 5
Cochliobolus_lunatus_m118_v2.0 5 5
Pyrenophora_teres_f._teres_22 5 5
Pyrenophora_tritici-repentis_ 4 4
Stagonospora_nodorum_ 5 5
Mycosphaerella_graminicola_IPO323_ 5 5
Zasmidium_cellare_ATCC_36951_v1.0 7 7
Dothistroma_septosporum 5 5
Septoria_musiva_v1.0 5 5
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5 5
Paracoccidioides_brasiliensis_Pb18_ 5 5
Coccidioides_posadasii_RMSCC_3488_ 4 4
Coccidioides_immitis_RS_ 5 5
Ajellomyces_dermatitidis_SLH14081_ 5 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5 5
Microsporum_canis_CBS_113480_ 5 5
Trichophyton_equinum_CBS_127.97_ 6 6
Trichophyton_verrucosum_HKI_0517_ 6 6
Arthroderma_benhamiae_CBS_112371_ 6 6
Trichophyton_tonsurans_CBS_112818_ 6 6
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 5 5
Aspergillus_zonatus_v1.0 5 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 8 8
Penicillium_chrysogenum_v1.0 8 8
Aspergillus_acidus_v1.0 7 7
Aspergillus_fumigatus_Af293 7 7
Aspergillus_brasiliensis_v1.0 9 9
Aspergillus_nidulans_FGSC_A4_ 8 8
Aspergillus_sydowii_v1.0 10 10
Aspergillus_versicolor_v1.0 9 9
Aspergillus_glaucus 7 7
Aspergillus_carbonarius_ITEM_5010_ 7 7
Neosartorya_fischeri_NRRL_181_ 8 8
Aspergillus_terreus_NIH2624_ 9 9
Aspergillus_tubingensis_v1.0 7 7
Aspergillus_wentii_v1.0 7 7
Aspergillus_oryzae_RIB40_ 7 7
Aspergillus_niger_22 7 7
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 8 8
Aspergillus_clavatus_NRRL_1_ 7 7
Penicillium_marneffei_ATCC_18224_ 8 8
Tuber_melanosporum_Mel28_22 5 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 5
Hansenula_polymorpha_v2.0 5 5
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 4 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 7 7
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 4 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 5 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 6 6
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 6 6
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 6 6
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 5 5
Pichia_pastoris_GS115_ 5 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 8 8
Yarrowia_lipolytica_CLIB122 7 7
Candida_lusitaniae_ATCC_42720_ 7 7
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 4 4
Candida_glabrata_CBS138 6 6
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 5 5
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 5 5
Zygosaccharomyces_rouxii_ 4 4
Saccharomyces_mikatae_MIT 4 4
Saccharomyces_paradoxus_MIT 4 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   5 5
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 4 4
Schizosaccharomyces_cryophilus_OY26_22 5 5
Schizosaccharomyces_octosporus_yFS286_ 5 5
Schizosaccharomyces_japonicus_yFS275_ 5 5
Schizosaccharomyces_pombe   (Fission yeast)   5 5
Catenaria_anguillulae_PL171_v1.0 4 4
Allomyces_macrogynus_ATCC_38327_ 10 10
Spizellomyces_punctatus_DAOM_BR117_ 7 7
Dictyostelium_discoideum 5 5
Dictyostelium_purpureum_ 5 5
Selaginella_moellendorffii_ 27 27
Pinus_taeda   (Loblolly pine)   18 18
Picea_abies   (Norway spruce)   10 10
Eucalyptus_grandis_v201   (Rose gum)   48 48
Theobroma_cacao_B97-61/B2_v1   (Cacao)   26 26
Gossypium_raimondii_v221 169 169
Citrus_clementina_v165 34 34
Citrus_sinensis_v154   (Sweet orange)   47 47
Thellungiella_halophila_v173 36 36
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   51 51
Capsella_rubella_v183 32 32
Arabidopsis_lyrata_   (Lyrate rockcress)   31 31
Arabidopsis_thaliana_10   (Thale cress)   46 46
Carica_papaya_   (Papaya)   25 25
Medicago_truncatula_   (Barrel medic)   54 54
Phaseolus_vulgaris_v186   (French bean)   57 57
Glycine_max_v109   (Soybean)   86 86
Cucumis_sativus_v122   (Cucumber)   56 56
Fragaria_vesca_   (Wild strawberry)   26 26
Malus_domestica_v196   (Apple)   57 57
Prunus_persica_v139   (Peach)   28 28
Linum_usitatissimum_v200   (Flax)   54 54
Manihot_esculenta_v147   (Cassava)   42 42
Populus_trichocarpa_v156   (Black cottonwood)   51 51
Vitis_vinifera_   (Wine grape)   23 23
Mimulus_guttatus_v140   (Spotted monkey flower)   43 43
Solanum_lycopersicum_v.2.3   (Tomato)   29 29
Solanum_tuberosum_   (Potato)   57 57
Actinidia_chinensis_Hongyang_ 37 37
Aquilegia_coerulea_v195 64 64
Triticum_urartu_22 28 28
Triticum_aestivum_22   (Bread wheat)   65 65
Aegilops_tauschii_22 27 27
Brachypodium_distachyon_   (Stiff brome)   45 45
Oryza_barthii_22   (African wild rice)   32 32
Oryza_meridionalis_22 35 35
Oryza_glumaepatula_22 36 36
Oryza_glaberrima   (African rice)   22 22
Oryza_punctata_22 36 36
Oryza_nivara_22 30 30
Oryza_brachyantha_22   (Malo sina)   25 25
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   39 39
Oryza_sativa_v193   (Rice)   39 39
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   46 46
Panicum_virgatum_v202   (Switchgrass)   63 63
Setaria_italica_v164   (Foxtail millet)   38 38
Zea_mays_subsp._mays_   (Maize)   59 59
Zea_mays_v181   (Maize)   73 73
Sorghum_bicolor_   (Sorghum)   27 27
Musa_balbisiana   (Balbis banana)   53 53
Musa_acuminata_22   (Wild Malaysian banana)   53 53
Amborella_trichopoda_22 19 19
Physcomitrella_patens 22 22
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 4 4
Chlorella_variabilis_sp._NC64A_ 6 6
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 10 10
Volvox_carteri_v199 10 10
Chlamydomonas_reinhardtii_4.0 15 15
Ostreococcus_sp._RCC809_ 5 5
Ostreococcus_lucimarinus_CCE9901_ 5 5
Ostreococcus_tauri_ 4 4
Bathycoccus_prasinos_ 5 5
Micromonas_sp._RCC299_ 6 6
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 10 10
Thecamonas_trahens_ATCC_50062_ 7 7
Bigelowiella_natans_CCMP2755_22 16 16
Cyanophora_paradoxa_ 5 5
Leishmania_mexicana_2.4 8 8
Leishmania_major_strain_Friedlin_ 8 8
Leishmania_infantum_JPCM5_2.4 8 8
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 10 10
Trypanosoma_cruzi_strain_CL_Brener 6 6
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 11 11
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 3 3
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 3 3
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 3 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 5
Phytophthora_sojae_1.1 5 5
Phytophthora_infestans_T30-4_ 3 3
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 6 6
Fragilariopsis_cylindrus 13 13
Thalassiosira_pseudonana_CCMP1335 5 5
Perkinsus_marinus_ATCC_50983_ 7 7
Paramecium_tetraurelia_ 32 32
Tetrahymena_thermophila_SB210_1_ 16 16
Ichthyophthirius_multifiliis_strain_G5_ 6 6
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 5 5
Cryptosporidium_parvum_Iowa_II 5 5
Neospora_caninum 4 4
Toxoplasma_gondii_VEG 5 5
Toxoplasma_gondii_ME49 5 5
Toxoplasma_gondii_GT1 5 5
Babesia_bovis_T2Bo_ 6 6
Theileria_parva__ 4 4
Theileria_annulata 4 4
Plasmodium_falciparum_3D7_ 4 4
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 3 3
Plasmodium_berghei_ANKA_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 27 24
Naegleria_gruberi_ 9 9
Guillardia_theta_CCMP2712_v1.0_ 15 15
Emiliania_huxleyi_CCMP1516_ 36 36
Marinobacter_aquaeolei_VT8 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   24 24
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   39 39
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   57 57
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   8 8
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 4 4
Coccidioides_posadasii_str._Silveira_ 5 5
Coccidioides_immitis_RMSCC_3703_ 3 3
Coccidioides_immitis_RMSCC_2394_ 4 4
Coccidioides_immitis_H538.4_ 4 4
Ajellomyces_dermatitidis_ER-3_ 5 5
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 5 5
Histoplasma_capsulatum_G186AR 4 4
Aspergillus_fumigatus_A1163_ 7 7
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 4 4
Saccharomyces_cerevisiae_PW5 5 5
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 5 5
Saccharomyces_cerevisiae_YJM269 4 4
Saccharomyces_cerevisiae_T7 5 5
Saccharomyces_cerevisiae_FostersB 4 4
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 3 3
Saccharomyces_cerevisiae_Vin13 5 5
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 4 4
Saccharomyces_cerevisiae_Sigma1278b 5 5
Saccharomyces_cerevisiae_W303 5 5
Saccharomyces_cerevisiae_JAY291 5 5
Saccharomyces_cerevisiae_AWRI1631 5 5
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_M22 2 2
Saccharomyces_cerevisiae_T73 3 3
Saccharomyces_cerevisiae_CLIB215 4 4
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 5 5
Saccharomyces_cerevisiae_YJM789 5 5
Saccharomyces_cerevisiae_RM11-1a 5 5
Saccharomyces_cerevisiae_RM11-1a_ 5 5
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5 5
Schizosaccharomyces_pombe_972h-_ 5 5
Batrachochytrium_dendrobatidis_JEL423_ 6 6
Batrachochytrium_dendrobatidis_JAM81_ 8 8
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   26 26
Hordeum_vulgare_22   (Domesticated barley)   73 73
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   25 25
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 4 4
Plasmodium_falciparum_HB3_ 3 3
Plasmodium_falciparum_Dd2_ 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   13 13
Pan_troglodytes_69_2.1.4   (Chimpanzee)   13 13
Gorilla_gorilla_69_3.1   (Western gorilla)   10 10
Pongo_abelii_69_2   (Sumatran orangutan)   11 11
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   11 11
Macaca_mulatta_69_1   (Rhesus monkey)   11 11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   14 14
Otolemur_garnettii_69_3   (Small-eared galago)   12 12
Microcebus_murinus_69_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_69_3.4   (Norway rat)   13 13
Mus_musculus_69_38   (House mouse)   12 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   9 9
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   10 10
Cavia_porcellus_69_3   (Domestic guinea pig)   10 10
Oryctolagus_cuniculus_69_2   (Rabbit)   14 14
Ochotona_princeps_69   (American pika)   9 9
Tupaia_belangeri_69   (Northern tree shrew)   7 7
Sus_scrofa_69_10.2   (Pig)   9 9
Bos_taurus_69_3.1   (Cattle)   13 13
Vicugna_pacos_69_1   (Alpaca)   8 8
Tursiops_truncatus_69_1   (Bottlenose dolphin)   10 10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   11 11
Ailuropoda_melanoleuca_69_1   (Giant panda)   12 12
Canis_familiaris_69_3.1   (Dog)   9 9
Felis_catus_69   (Domestic cat)   8 8
Equus_caballus_69_2   (Horse)   11 11
Myotis_lucifugus_69_2.0   (Little brown bat)   11 11
Pteropus_vampyrus_69_1   (Large flying fox)   12 12
Sorex_araneus_69_1   (European shrew)   6 6
Erinaceus_europaeus_69   (Western European hedgehog)   9 9
Procavia_capensis_69_1   (Cape rock hyrax)   10 10
Loxodonta_africana_69_3   (African savanna elephant)   11 11
Echinops_telfairi_69   (Small Madagascar hedgehog)   10 10
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   9 9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   9 9
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12 12
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   11 11
Ornithorhynchus_anatinus_69_5   (Platypus)   5 5
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_69_2   (Turkey)   9 9
Gallus_gallus_69_2   (Chicken)   10 10
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8 8
Anolis_carolinensis_69_2.0   (Green anole)   9 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_69_1   (Coelacanth)   8 8
Gadus_morhua_69_1   (Atlantic cod)   13 13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   13 13
Takifugu_rubripes_69_4   (Torafugu)   13 13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11 11
Oryzias_latipes_69_1   (Japanese medaka)   11 11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13 13
Oreochromis_niloticus_69_1.0   (Nile tilapia)   12 12
Danio_rerio_69_9   (Zebrafish)   11 11
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 7
Ciona_intestinalis_69   (Vase tunicate)   8 8
Drosophila_melanogaster_69_5   (Fruit fly)   27 27
Caenorhabditis_elegans_69_215   (Roundworm)   7 7
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5 5
Arabidopsis_thaliana_10   (Thale cress)   31 31

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   34 34
Homo_sapiens__(NCBI_version)   (Human)   23 23
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12 12
Heliconius_numata__(Incomplete) 14 14
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4 4
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 3
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 5
Lotus_japonicus__(Early_assembly) 30 30
Malus_x_domestica_(Duplicate)   (Apple)   57 57
Ricinus_communis__(Early_assembly)   (Castor bean)   25 25
Nicotiana_benthamiana_0.4.4_(Early_draft) 52 52
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   29 29
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   29 29
Phoenix_dactylifera__(Early_draft)   (Date palm)   14 14
Protein_Data_Bank_(all_PDB_sequenc) 47 47
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 100 100
Protozoadb_2010_08_(Protozoadb) 107 107
STRING_v9.0.5_(STRING) 1426 1421
TargetDB__(Targets) 27 27
NCBI_2017_08_genome 15463 15401
PDB_chains_(SCOP_1.75)_(PDB) 5 5
Uniprot_2018_03_genome 17576 17390

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