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Domain combinations for Second domain of FERM superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Second domain of FERM domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   207 191
Pan_troglodytes_76_2.1.4   (Chimpanzee)   51 47
Gorilla_gorilla_76_3.1   (Western gorilla)   76 71
Pongo_abelii_76_2   (Sumatran orangutan)   49 47
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   57 54
Papio_anubis_76   (Olive baboon)   69 66
Macaca_mulatta_76_1   (Rhesus monkey)   108 101
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   130 122
Otolemur_garnettii_76_3   (Small-eared galago)   54 50
Microcebus_murinus_76_1   (Gray mouse lemur)   45 44
Rattus_norvegicus_76_5.0   (Norway rat)   66 63
Mus_musculus_76_38   (House mouse)   127 121
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   43 40
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   51 47
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   53 49
Cavia_porcellus_76_3   (Domestic guinea pig)   49 44
Oryctolagus_cuniculus_76_2   (Rabbit)   58 54
Ochotona_princeps_76   (American pika)   44 41
Tupaia_belangeri_76   (Northern tree shrew)   42 41
Sus_scrofa_76_10.2   (Pig)   58 55
Bos_taurus_76_3.1   (Cattle)   59 56
Ovis_aries_76_3.1   (Sheep)   62 58
Vicugna_pacos_76_1   (Alpaca)   30 30
Tursiops_truncatus_76_1   (Bottlenose dolphin)   51 47
Mustela_putorius_furo_76_1.0   (Domestic ferret)   51 48
Ailuropoda_melanoleuca_76_1   (Giant panda)   60 55
Canis_familiaris_76_3.1   (Dog)   70 65
Felis_catus_76_6.2   (Domestic cat)   55 51
Equus_caballus_76_2   (Horse)   84 75
Myotis_lucifugus_76_2.0   (Little brown bat)   54 50
Pteropus_vampyrus_76_1   (Large flying fox)   50 46
Sorex_araneus_76_1   (European shrew)   31 31
Erinaceus_europaeus_76   (Western European hedgehog)   41 38
Procavia_capensis_76_1   (Cape rock hyrax)   43 42
Loxodonta_africana_76_3   (African savanna elephant)   79 77
Echinops_telfairi_76   (Small Madagascar hedgehog)   39 38
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   67 66
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   30 30
Macropus_eugenii_76_1.0   (Tammar wallaby)   43 42
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   64 62
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   57 55
Ornithorhynchus_anatinus_76_5   (Platypus)   55 53
Saccoglossus_kowalevskii_v3.0 72 71
Petromyzon_marinus_76_7.0   (Sea lamprey)   32 31
Meleagris_gallopavo_76_2   (Turkey)   55 53
Gallus_gallus_76_4   (Chicken)   55 52
Anas_platyrhynchos_76_1.0   (Mallard)   50 47
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   53 50
Ficedula_albicollis_76_1.0   (Collared flycatcher)   52 48
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   67 62
Anolis_carolinensis_76_2.0   (Green anole)   56 51
Xenopus_laevis_   (African clawed frog)   62 60
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   66 63
Latimeria_chalumnae_76_1   (Coelacanth)   51 48
Lepisosteus_oculatus_76   (Spotted gar)   78 74
Gadus_morhua_76_1   (Atlantic cod)   68 65
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   99 92
Takifugu_rubripes_76_4   (Torafugu)   256 237
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   86 79
Oryzias_latipes_76_1   (Japanese medaka)   92 85
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   74 69
Poecilia_formosa_76   (Amazon molly)   76 72
Oreochromis_niloticus_76_1.0   (Nile tilapia)   100 93
Astyanax_mexicanus_76   (Mexican tetra)   70 68
Danio_rerio_76_9   (Zebrafish)   134 126
Oikopleura_dioica 15 14
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   67 57
Ciona_intestinalis_76   (Vase tunicate)   22 21
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   31 31
Adineta_vaga 53 48
Octopus_bimaculoides_280 46 41
Crassostrea_gigas_22   (Pacific oyster)   27 24
Lottia_gigantea_   (Owl limpet)   25 22
Helobdella_robusta_ 36 34
Capitella_sp._I_ 28 26
Danaus_plexippus_OGS1.0   (Monarch butterfly)   27 24
Heliconius_melpomene_   (Postman butterfly)   21 19
Bombyx_mori_   (Domestic silkworm)   22 22
Nasonia_vitripennis_   (Jewel wasp)   15 12
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   41 38
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   22 20
Linepithema_humile_v1.1   (Argentine ant)   20 18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   24 21
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19 18
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 19
Atta_cephalotes_v1.1 22 21
Camponotus_floridanus_v3.3   (Florida carpenter ant)   20 18
Lucilia_cuprina   (Australian sheep blowfly)   24 22
Drosophila_grimshawi_1.3 25 22
Drosophila_willistoni_1.3 24 22
Drosophila_pseudoobscura_2.13 25 22
Drosophila_persimilis_1.3 21 19
Drosophila_suzukii 28 25
Drosophila_yakuba_1.3 23 20
Drosophila_simulans_1.3 20 18
Drosophila_sechellia_1.3 24 21
Drosophila_melanogaster_76_5   (Fruit fly)   86 79
Drosophila_erecta_1.3 24 21
Drosophila_ananassae_1.3 23 21
Drosophila_virilis_1.2 24 21
Drosophila_mojavensis_1.3 25 22
Megaselia_scalaris_22 12 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   25 23
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   25 22
Anopheles_darlingi_22   (American malaria mosquito)   24 21
Anopheles_gambiae_49_3j   (African malaria mosquito)   17 17
Tribolium_castaneum_3.0   (Red flour beetle)   26 23
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   21 19
Acyrthosiphon_pisum_   (Pea aphid)   20 18
Rhodnius_prolixus_22 23 22
Daphnia_pulex_   (Common water flea)   25 23
Strigamia_maritima_22 21 19
Sarcoptes_scabiei 21 19
Tetranychus_urticae_   (Two-spotted spider mite)   18 16
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   14 13
Pristionchus_pacificus_ 16 15
Meloidogyne_incognita_   (Southern root-knot nematode)   17 17
Meloidogyne_hapla_ 10 10
Onchocerca_volvulus_22 20 19
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   31 30
Caenorhabditis_japonica_ 28 27
Caenorhabditis_brenneri_ 23 22
Caenorhabditis_remanei_ 22 21
Caenorhabditis_elegans_76_235   (Roundworm)   55 54
Caenorhabditis_briggsae_2 19 18
Trichinella_spiralis_22 29 27
Hymenolepis_microstoma_ 23 23
Echinococcus_multilocularis_ 25 25
Echinococcus_granulosus_ 26 26
Taenia_solium_   (Pork tapeworm)   25 25
Schistosoma_mansoni_ 23 23
Mnemiopsis_leidyi   (Sea walnut)   15 15
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 26 25
Nematostella_vectensis_1.0   (Starlet sea anemone)   30 28
Hydra_vulgaris 22 21
Amphimedon_queenslandica 32 30
Trichoplax_adhaerens_ 20 18
Proterospongia_sp._ATCC_50818_ 21 19
Monosiga_brevicollis_ 16 14
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 19 17
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 4 3
Dictyostelium_discoideum 10 7
Dictyostelium_purpureum_ 9 7
Entamoeba_dispar_1.2 3 3
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 4 4
Eucalyptus_grandis_v201   (Rose gum)   2 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 7 7
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   2 2
Thellungiella_halophila_v173 2 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   3 3
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   3 3
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   4 4
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   2 2
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   4 4
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 3 3
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 1 1
Oryza_nivara_22 3 3
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 2
Panicum_virgatum_v202   (Switchgrass)   2 2
Setaria_italica_v164   (Foxtail millet)   1 1
Zea_mays_subsp._mays_   (Maize)   2 2
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   2 2
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 1 1
Physcomitrella_patens 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Thecamonas_trahens_ATCC_50062_ 30 27
Bigelowiella_natans_CCMP2755_22 3 3
Trypanosoma_cruzi_strain_CL_Brener 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 2 2
Paramecium_tetraurelia_ 3 3
Tetrahymena_thermophila_SB210_1_ 4 4
Naegleria_gruberi_ 3 3
Trichomonas_vaginalis_ 28 15
Emiliania_huxleyi_CCMP1516_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   82 79
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   66 59
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   25 25
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   20 19
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   39 38
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 2 2
Hordeum_vulgare_22   (Domesticated barley)   1 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Cyanobacterium_aponinum_PCC_10605 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   56 51
Pan_troglodytes_69_2.1.4   (Chimpanzee)   50 46
Gorilla_gorilla_69_3.1   (Western gorilla)   53 50
Pongo_abelii_69_2   (Sumatran orangutan)   49 47
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   52 49
Macaca_mulatta_69_1   (Rhesus monkey)   52 49
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   55 51
Otolemur_garnettii_69_3   (Small-eared galago)   52 49
Microcebus_murinus_69_1   (Gray mouse lemur)   45 44
Rattus_norvegicus_69_3.4   (Norway rat)   54 51
Mus_musculus_69_38   (House mouse)   49 46
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   43 40
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   42 38
Cavia_porcellus_69_3   (Domestic guinea pig)   49 44
Oryctolagus_cuniculus_69_2   (Rabbit)   51 48
Ochotona_princeps_69   (American pika)   44 41
Tupaia_belangeri_69   (Northern tree shrew)   42 41
Sus_scrofa_69_10.2   (Pig)   53 50
Bos_taurus_69_3.1   (Cattle)   53 50
Vicugna_pacos_69_1   (Alpaca)   30 30
Tursiops_truncatus_69_1   (Bottlenose dolphin)   51 47
Mustela_putorius_furo_69_1.0   (Domestic ferret)   51 48
Ailuropoda_melanoleuca_69_1   (Giant panda)   51 47
Canis_familiaris_69_3.1   (Dog)   53 49
Felis_catus_69   (Domestic cat)   36 35
Equus_caballus_69_2   (Horse)   52 48
Myotis_lucifugus_69_2.0   (Little brown bat)   51 48
Pteropus_vampyrus_69_1   (Large flying fox)   50 46
Sorex_araneus_69_1   (European shrew)   31 31
Erinaceus_europaeus_69   (Western European hedgehog)   41 38
Procavia_capensis_69_1   (Cape rock hyrax)   43 42
Loxodonta_africana_69_3   (African savanna elephant)   50 48
Echinops_telfairi_69   (Small Madagascar hedgehog)   39 38
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   36 35
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   30 30
Macropus_eugenii_69_1.0   (Tammar wallaby)   43 42
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   49 48
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   52 50
Ornithorhynchus_anatinus_69_5   (Platypus)   47 46
Petromyzon_marinus_69_7.0   (Sea lamprey)   29 28
Meleagris_gallopavo_69_2   (Turkey)   47 45
Gallus_gallus_69_2   (Chicken)   48 45
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   52 49
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   51 47
Anolis_carolinensis_69_2.0   (Green anole)   52 48
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   52 49
Latimeria_chalumnae_69_1   (Coelacanth)   45 42
Gadus_morhua_69_1   (Atlantic cod)   67 64
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   77 70
Takifugu_rubripes_69_4   (Torafugu)   75 70
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   70 65
Oryzias_latipes_69_1   (Japanese medaka)   70 65
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   74 69
Oreochromis_niloticus_69_1.0   (Nile tilapia)   75 70
Danio_rerio_69_9   (Zebrafish)   73 69
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   18 17
Ciona_intestinalis_69   (Vase tunicate)   20 19
Drosophila_melanogaster_69_5   (Fruit fly)   24 21
Caenorhabditis_elegans_69_215   (Roundworm)   20 19
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   227 206
Homo_sapiens__(NCBI_version)   (Human)   101 93
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   49 46
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   20 19
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   19 19
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   17 17
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Protein_Data_Bank_(all_PDB_sequenc) 155 155
TargetDB__(Targets) 77 74
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 319 319
STRING_v9.0.5_(STRING) 2017 1872
Uniprot_2018_03_genome 21193 19912
NCBI_2017_08_genome 44206 41973
Protozoadb_2010_08_(Protozoadb) 72 46
PDB_chains_(SCOP_1.75)_(PDB) 21 21

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