SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Second domain of FERM superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Second domain of FERM domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   207 191
Pan_troglodytes_76_2.1.4   (Chimpanzee)   51 47
Gorilla_gorilla_76_3.1   (Western gorilla)   76 71
Pongo_abelii_76_2   (Sumatran orangutan)   49 47
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   57 54
Papio_anubis_76   (Olive baboon)   69 66
Macaca_mulatta_76_1   (Rhesus monkey)   108 101
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   130 122
Otolemur_garnettii_76_3   (Small-eared galago)   54 50
Microcebus_murinus_76_1   (Gray mouse lemur)   45 44
Rattus_norvegicus_76_5.0   (Norway rat)   66 63
Mus_musculus_76_38   (House mouse)   127 121
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   43 40
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   51 47
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   53 49
Cavia_porcellus_76_3   (Domestic guinea pig)   49 44
Oryctolagus_cuniculus_76_2   (Rabbit)   58 54
Ochotona_princeps_76   (American pika)   44 41
Tupaia_belangeri_76   (Northern tree shrew)   42 41
Sus_scrofa_76_10.2   (Pig)   58 55
Bos_taurus_76_3.1   (Cattle)   59 56
Ovis_aries_76_3.1   (Sheep)   62 58
Vicugna_pacos_76_1   (Alpaca)   30 30
Tursiops_truncatus_76_1   (Bottlenose dolphin)   51 47
Mustela_putorius_furo_76_1.0   (Domestic ferret)   51 48
Ailuropoda_melanoleuca_76_1   (Giant panda)   60 55
Canis_familiaris_76_3.1   (Dog)   70 65
Felis_catus_76_6.2   (Domestic cat)   55 51
Equus_caballus_76_2   (Horse)   84 75
Myotis_lucifugus_76_2.0   (Little brown bat)   54 50
Pteropus_vampyrus_76_1   (Large flying fox)   50 46
Sorex_araneus_76_1   (European shrew)   31 31
Erinaceus_europaeus_76   (Western European hedgehog)   41 38
Procavia_capensis_76_1   (Cape rock hyrax)   43 42
Loxodonta_africana_76_3   (African savanna elephant)   79 77
Echinops_telfairi_76   (Small Madagascar hedgehog)   39 38
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   67 66
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   30 30
Macropus_eugenii_76_1.0   (Tammar wallaby)   43 42
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   64 62
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   57 55
Ornithorhynchus_anatinus_76_5   (Platypus)   55 53
Saccoglossus_kowalevskii_v3.0 72 71
Petromyzon_marinus_76_7.0   (Sea lamprey)   32 31
Meleagris_gallopavo_76_2   (Turkey)   55 53
Gallus_gallus_76_4   (Chicken)   55 52
Anas_platyrhynchos_76_1.0   (Mallard)   50 47
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   53 50
Ficedula_albicollis_76_1.0   (Collared flycatcher)   52 48
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   67 62
Anolis_carolinensis_76_2.0   (Green anole)   56 51
Xenopus_laevis_   (African clawed frog)   62 60
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   66 63
Latimeria_chalumnae_76_1   (Coelacanth)   51 48
Lepisosteus_oculatus_76   (Spotted gar)   78 74
Gadus_morhua_76_1   (Atlantic cod)   68 65
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   99 92
Takifugu_rubripes_76_4   (Torafugu)   256 237
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   86 79
Oryzias_latipes_76_1   (Japanese medaka)   92 85
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   74 69
Poecilia_formosa_76   (Amazon molly)   76 72
Oreochromis_niloticus_76_1.0   (Nile tilapia)   100 93
Astyanax_mexicanus_76   (Mexican tetra)   70 68
Danio_rerio_76_9   (Zebrafish)   134 126
Oikopleura_dioica 15 14
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   67 57
Ciona_intestinalis_76   (Vase tunicate)   22 21
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   31 31
Adineta_vaga 53 48
Octopus_bimaculoides_280 46 41
Crassostrea_gigas_22   (Pacific oyster)   27 24
Lottia_gigantea_   (Owl limpet)   25 22
Helobdella_robusta_ 36 34
Capitella_sp._I_ 28 26
Danaus_plexippus_OGS1.0   (Monarch butterfly)   27 24
Heliconius_melpomene_   (Postman butterfly)   21 19
Bombyx_mori_   (Domestic silkworm)   22 22
Nasonia_vitripennis_   (Jewel wasp)   15 12
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   41 38
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   22 20
Linepithema_humile_v1.1   (Argentine ant)   20 18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   24 21
Solenopsis_invicta_v.2.2.3   (Red fire ant)   19 18
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   21 19
Atta_cephalotes_v1.1 22 21
Camponotus_floridanus_v3.3   (Florida carpenter ant)   20 18
Lucilia_cuprina   (Australian sheep blowfly)   24 22
Drosophila_grimshawi_1.3 25 22
Drosophila_willistoni_1.3 24 22
Drosophila_pseudoobscura_2.13 25 22
Drosophila_persimilis_1.3 21 19
Drosophila_suzukii 28 25
Drosophila_yakuba_1.3 23 20
Drosophila_simulans_1.3 20 18
Drosophila_sechellia_1.3 24 21
Drosophila_melanogaster_76_5   (Fruit fly)   86 79
Drosophila_erecta_1.3 24 21
Drosophila_ananassae_1.3 23 21
Drosophila_virilis_1.2 24 21
Drosophila_mojavensis_1.3 25 22
Megaselia_scalaris_22 12 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   25 23
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   25 22
Anopheles_darlingi_22   (American malaria mosquito)   24 21
Anopheles_gambiae_49_3j   (African malaria mosquito)   17 17
Tribolium_castaneum_3.0   (Red flour beetle)   26 23
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   21 19
Acyrthosiphon_pisum_   (Pea aphid)   20 18
Rhodnius_prolixus_22 23 22
Daphnia_pulex_   (Common water flea)   25 23
Strigamia_maritima_22 21 19
Sarcoptes_scabiei 21 19
Tetranychus_urticae_   (Two-spotted spider mite)   18 16
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   14 13
Pristionchus_pacificus_ 16 15
Meloidogyne_incognita_   (Southern root-knot nematode)   17 17
Meloidogyne_hapla_ 10 10
Onchocerca_volvulus_22 20 19
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   31 30
Caenorhabditis_japonica_ 28 27
Caenorhabditis_brenneri_ 23 22
Caenorhabditis_remanei_ 22 21
Caenorhabditis_elegans_76_235   (Roundworm)   55 54
Caenorhabditis_briggsae_2 19 18
Trichinella_spiralis_22 29 27
Hymenolepis_microstoma_ 23 23
Echinococcus_multilocularis_ 25 25
Echinococcus_granulosus_ 26 26
Taenia_solium_   (Pork tapeworm)   25 25
Schistosoma_mansoni_ 23 23
Mnemiopsis_leidyi   (Sea walnut)   15 15
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 26 25
Nematostella_vectensis_1.0   (Starlet sea anemone)   30 28
Hydra_vulgaris 22 21
Amphimedon_queenslandica 32 30
Trichoplax_adhaerens_ 20 18
Proterospongia_sp._ATCC_50818_ 21 19
Monosiga_brevicollis_ 16 14
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 19 17
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 4 3
Dictyostelium_discoideum 10 7
Dictyostelium_purpureum_ 9 7
Entamoeba_dispar_1.2 3 3
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 4 4
Eucalyptus_grandis_v201   (Rose gum)   2 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 7 7
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   2 2
Thellungiella_halophila_v173 2 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   3 3
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   3 3
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   4 4
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   2 2
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   2 2
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   4 4
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 3 3
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 1 1
Oryza_nivara_22 3 3
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 2
Panicum_virgatum_v202   (Switchgrass)   2 2
Setaria_italica_v164   (Foxtail millet)   1 1
Zea_mays_subsp._mays_   (Maize)   2 2
Zea_mays_v181   (Maize)   3 3
Sorghum_bicolor_   (Sorghum)   2 2
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 1 1
Physcomitrella_patens 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Thecamonas_trahens_ATCC_50062_ 30 27
Bigelowiella_natans_CCMP2755_22 3 3
Trypanosoma_cruzi_strain_CL_Brener 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   2 2
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 2 2
Phytophthora_capsici_ 2 2
Paramecium_tetraurelia_ 3 3
Tetrahymena_thermophila_SB210_1_ 4 4
Naegleria_gruberi_ 3 3
Trichomonas_vaginalis_ 28 15
Emiliania_huxleyi_CCMP1516_ 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   82 79
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   66 59
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   25 25
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   20 19
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   39 38
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 2 2
Hordeum_vulgare_22   (Domesticated barley)   1 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Cyanobacterium_aponinum_PCC_10605 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   56 51
Pan_troglodytes_69_2.1.4   (Chimpanzee)   50 46
Gorilla_gorilla_69_3.1   (Western gorilla)   53 50
Pongo_abelii_69_2   (Sumatran orangutan)   49 47
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   52 49
Macaca_mulatta_69_1   (Rhesus monkey)   52 49
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   55 51
Otolemur_garnettii_69_3   (Small-eared galago)   52 49
Microcebus_murinus_69_1   (Gray mouse lemur)   45 44
Rattus_norvegicus_69_3.4   (Norway rat)   54 51
Mus_musculus_69_38   (House mouse)   49 46
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   43 40
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   42 38
Cavia_porcellus_69_3   (Domestic guinea pig)   49 44
Oryctolagus_cuniculus_69_2   (Rabbit)   51 48
Ochotona_princeps_69   (American pika)   44 41
Tupaia_belangeri_69   (Northern tree shrew)   42 41
Sus_scrofa_69_10.2   (Pig)   53 50
Bos_taurus_69_3.1   (Cattle)   53 50
Vicugna_pacos_69_1   (Alpaca)   30 30
Tursiops_truncatus_69_1   (Bottlenose dolphin)   51 47
Mustela_putorius_furo_69_1.0   (Domestic ferret)   51 48
Ailuropoda_melanoleuca_69_1   (Giant panda)   51 47
Canis_familiaris_69_3.1   (Dog)   53 49
Felis_catus_69   (Domestic cat)   36 35
Equus_caballus_69_2   (Horse)   52 48
Myotis_lucifugus_69_2.0   (Little brown bat)   51 48
Pteropus_vampyrus_69_1   (Large flying fox)   50 46
Sorex_araneus_69_1   (European shrew)   31 31
Erinaceus_europaeus_69   (Western European hedgehog)   41 38
Procavia_capensis_69_1   (Cape rock hyrax)   43 42
Loxodonta_africana_69_3   (African savanna elephant)   50 48
Echinops_telfairi_69   (Small Madagascar hedgehog)   39 38
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   36 35
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   30 30
Macropus_eugenii_69_1.0   (Tammar wallaby)   43 42
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   49 48
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   52 50
Ornithorhynchus_anatinus_69_5   (Platypus)   47 46
Petromyzon_marinus_69_7.0   (Sea lamprey)   29 28
Meleagris_gallopavo_69_2   (Turkey)   47 45
Gallus_gallus_69_2   (Chicken)   48 45
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   52 49
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   51 47
Anolis_carolinensis_69_2.0   (Green anole)   52 48
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   52 49
Latimeria_chalumnae_69_1   (Coelacanth)   45 42
Gadus_morhua_69_1   (Atlantic cod)   67 64
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   77 70
Takifugu_rubripes_69_4   (Torafugu)   75 70
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   70 65
Oryzias_latipes_69_1   (Japanese medaka)   70 65
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   74 69
Oreochromis_niloticus_69_1.0   (Nile tilapia)   75 70
Danio_rerio_69_9   (Zebrafish)   73 69
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   18 17
Ciona_intestinalis_69   (Vase tunicate)   20 19
Drosophila_melanogaster_69_5   (Fruit fly)   24 21
Caenorhabditis_elegans_69_215   (Roundworm)   20 19
Arabidopsis_thaliana_10   (Thale cress)   1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   227 206
Homo_sapiens__(NCBI_version)   (Human)   101 93
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   49 46
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   20 19
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   19 19
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   17 17
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Protein_Data_Bank_(all_PDB_sequenc) 155 155
TargetDB__(Targets) 77 74
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 319 319
STRING_v9.0.5_(STRING) 2017 1872
Uniprot_2018_03_genome 21193 19912
NCBI_2017_08_genome 44206 41973
Protozoadb_2010_08_(Protozoadb) 72 46
PDB_chains_(SCOP_1.75)_(PDB) 21 21

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]