SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for HMG-box superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a HMG-box domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   250 192
Pan_troglodytes_76_2.1.4   (Chimpanzee)   57 48
Gorilla_gorilla_76_3.1   (Western gorilla)   118 89
Pongo_abelii_76_2   (Sumatran orangutan)   78 59
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   62 51
Papio_anubis_76   (Olive baboon)   80 63
Macaca_mulatta_76_1   (Rhesus monkey)   127 102
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   207 150
Otolemur_garnettii_76_3   (Small-eared galago)   113 79
Microcebus_murinus_76_1   (Gray mouse lemur)   57 43
Rattus_norvegicus_76_5.0   (Norway rat)   171 106
Mus_musculus_76_38   (House mouse)   209 150
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   47 38
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   64 50
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   79 63
Cavia_porcellus_76_3   (Domestic guinea pig)   69 54
Oryctolagus_cuniculus_76_2   (Rabbit)   88 63
Ochotona_princeps_76   (American pika)   41 34
Tupaia_belangeri_76   (Northern tree shrew)   65 47
Sus_scrofa_76_10.2   (Pig)   69 56
Bos_taurus_76_3.1   (Cattle)   81 63
Ovis_aries_76_3.1   (Sheep)   82 62
Vicugna_pacos_76_1   (Alpaca)   30 27
Tursiops_truncatus_76_1   (Bottlenose dolphin)   52 42
Mustela_putorius_furo_76_1.0   (Domestic ferret)   65 51
Ailuropoda_melanoleuca_76_1   (Giant panda)   70 58
Canis_familiaris_76_3.1   (Dog)   80 70
Felis_catus_76_6.2   (Domestic cat)   64 50
Equus_caballus_76_2   (Horse)   61 49
Myotis_lucifugus_76_2.0   (Little brown bat)   59 46
Pteropus_vampyrus_76_1   (Large flying fox)   55 44
Sorex_araneus_76_1   (European shrew)   26 24
Erinaceus_europaeus_76   (Western European hedgehog)   46 34
Procavia_capensis_76_1   (Cape rock hyrax)   42 34
Loxodonta_africana_76_3   (African savanna elephant)   87 69
Echinops_telfairi_76   (Small Madagascar hedgehog)   57 47
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   103 79
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   29 25
Macropus_eugenii_76_1.0   (Tammar wallaby)   48 39
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   61 51
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   68 53
Ornithorhynchus_anatinus_76_5   (Platypus)   43 38
Saccoglossus_kowalevskii_v3.0 91 70
Petromyzon_marinus_76_7.0   (Sea lamprey)   38 28
Meleagris_gallopavo_76_2   (Turkey)   48 38
Gallus_gallus_76_4   (Chicken)   47 42
Anas_platyrhynchos_76_1.0   (Mallard)   43 40
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   51 42
Ficedula_albicollis_76_1.0   (Collared flycatcher)   54 45
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   51 47
Anolis_carolinensis_76_2.0   (Green anole)   53 43
Xenopus_laevis_   (African clawed frog)   267 212
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   70 59
Latimeria_chalumnae_76_1   (Coelacanth)   78 61
Lepisosteus_oculatus_76   (Spotted gar)   61 49
Gadus_morhua_76_1   (Atlantic cod)   70 56
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   97 80
Takifugu_rubripes_76_4   (Torafugu)   209 171
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   86 65
Oryzias_latipes_76_1   (Japanese medaka)   90 75
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   78 62
Poecilia_formosa_76   (Amazon molly)   78 65
Oreochromis_niloticus_76_1.0   (Nile tilapia)   104 84
Astyanax_mexicanus_76   (Mexican tetra)   80 66
Danio_rerio_76_9   (Zebrafish)   147 117
Oikopleura_dioica 22 20
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   26 22
Ciona_intestinalis_76   (Vase tunicate)   33 24
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   37 30
Adineta_vaga 93 82
Octopus_bimaculoides_280 94 79
Crassostrea_gigas_22   (Pacific oyster)   36 32
Lottia_gigantea_   (Owl limpet)   38 32
Helobdella_robusta_ 78 68
Capitella_sp._I_ 39 32
Danaus_plexippus_OGS1.0   (Monarch butterfly)   23 22
Heliconius_melpomene_   (Postman butterfly)   27 24
Bombyx_mori_   (Domestic silkworm)   27 26
Nasonia_vitripennis_   (Jewel wasp)   23 21
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   31 30
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   29 28
Linepithema_humile_v1.1   (Argentine ant)   32 30
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   31 29
Solenopsis_invicta_v.2.2.3   (Red fire ant)   26 24
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   29 28
Atta_cephalotes_v1.1 34 32
Camponotus_floridanus_v3.3   (Florida carpenter ant)   29 27
Lucilia_cuprina   (Australian sheep blowfly)   26 22
Drosophila_grimshawi_1.3 29 26
Drosophila_willistoni_1.3 34 32
Drosophila_pseudoobscura_2.13 36 34
Drosophila_persimilis_1.3 33 31
Drosophila_suzukii 38 32
Drosophila_yakuba_1.3 32 28
Drosophila_simulans_1.3 31 29
Drosophila_sechellia_1.3 28 27
Drosophila_melanogaster_76_5   (Fruit fly)   83 75
Drosophila_erecta_1.3 31 28
Drosophila_ananassae_1.3 34 32
Drosophila_virilis_1.2 32 30
Drosophila_mojavensis_1.3 31 29
Megaselia_scalaris_22 13 12
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   42 36
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38 36
Anopheles_darlingi_22   (American malaria mosquito)   21 17
Anopheles_gambiae_49_3j   (African malaria mosquito)   24 22
Tribolium_castaneum_3.0   (Red flour beetle)   44 34
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   34 29
Acyrthosiphon_pisum_   (Pea aphid)   24 20
Rhodnius_prolixus_22 35 30
Daphnia_pulex_   (Common water flea)   57 40
Strigamia_maritima_22 53 36
Sarcoptes_scabiei 26 19
Tetranychus_urticae_   (Two-spotted spider mite)   44 37
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   28 22
Pristionchus_pacificus_ 31 27
Meloidogyne_incognita_   (Southern root-knot nematode)   31 26
Meloidogyne_hapla_ 17 15
Onchocerca_volvulus_22 24 21
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   46 43
Caenorhabditis_japonica_ 18 16
Caenorhabditis_brenneri_ 41 40
Caenorhabditis_remanei_ 54 36
Caenorhabditis_elegans_76_235   (Roundworm)   42 36
Caenorhabditis_briggsae_2 52 41
Trichinella_spiralis_22 26 23
Hymenolepis_microstoma_ 23 19
Echinococcus_multilocularis_ 26 22
Echinococcus_granulosus_ 26 22
Taenia_solium_   (Pork tapeworm)   24 20
Schistosoma_mansoni_ 27 23
Mnemiopsis_leidyi   (Sea walnut)   23 21
Thelohanellus_kitauei 7 6
Acropora_digitifera_v1.0 32 28
Nematostella_vectensis_1.0   (Starlet sea anemone)   38 33
Hydra_vulgaris 33 29
Amphimedon_queenslandica 21 16
Trichoplax_adhaerens_ 21 18
Proterospongia_sp._ATCC_50818_ 20 15
Monosiga_brevicollis_ 17 12
Sphaeroforma_arctica_JP610_ 8 6
Capsaspora_owczarzaki_ATCC_30864_ 13 9
Conidiobolus_coronatus_NRRL28638_v1.0 8 7
Mortierella_verticillata_NRRL_6337_ 22 17
Phycomyces_blakesleeanus_ 27 25
Rhizopus_oryzae_RA_99-880_ 34 30
Mucor_circinelloides_ 30 26
Rhizomucor_miehei_CAU432_ 19 16
Malassezia_globosa_CBS_7966_ 10 6
Sporisorium_reilianum_22 11 9
Ustilago_maydis_ 11 9
Mixia_osmundae_IAM_14324_v1.0 10 9
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 9 8
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 23 21
Melampsora_laricis-populina_ 21 20
Rhodotorula_graminis_WP1_v1.0 12 11
Sporobolomyces_roseus_IAM_13481_ 9 8
Microbotryum_violaceum_22 13 12
Wallemia_sebi_v1.0 8 7
Sphaerobolus_stellatus_v1.0 32 30
Piloderma_croceum_F_1598_v1.0 19 17
Serpula_lacrymans_var._lacrymans_S7.9_ 21 19
Coniophora_puteana 27 24
Hydnomerulius_pinastri_v2.0 20 18
Paxillus_rubicundulus_Ve08.2h10_v1.0 19 17
Pisolithus_microcarpus_441_v1.0 18 16
Pisolithus_tinctorius_Marx_270_v1.0 19 18
Scleroderma_citrinum_Foug_A_v1.0 19 17
Coprinopsis_cinerea_okayama7_130_v3 30 28
Pleurotus_ostreatus_   (Oyster mushroom)   19 17
Amanita_thiersii_Skay4041_v1.0 19 17
Amanita_muscaria_Koide_v1.0   (Fly agaric)   26 24
Galerina_marginata_v1.0 26 24
Hebeloma_cylindrosporum_h7_v2.0 17 15
Laccaria_bicolor_S238N-H82_ 25 21
Agaricus_bisporus_var._bisporus_ 15 14
Schizophyllum_commune_ 39 37
Stereum_hirsutum_FP-91666_SS1__v1.0 29 26
Heterobasidion_annosum_ 23 21
Gloeophyllum_trabeumv1.0 17 15
Punctularia_strigosozonata_v1.0 18 15
Sebacina_vermifera_MAFF_305830_v1.0 20 18
Fomitiporia_mediterranea_v1.0 44 43
Tulasnella_calospora_AL13/4D_v1.0 16 14
Postia_placenta_ 39 35
Wolfiporia_cocos_MD-104_SS10__v1.0 18 16
Fomitopsis_pinicolav1.0 19 17
Fomitopsis_pinicola_FP-58527_SS1_v3.0 21 19
Phanerochaete_chrysosporium_RP-78_2.1 25 23
Dichomitus_squalens 21 19
Trametes_versicolor_v1.0 32 30
Tremella_mesenterica_   (Witches' butter)   7 6
Daldinia_eschscholzii_EC12_v1.0 10 9
Apiospora_montagnei_NRRL_25634_v1.0 11 11
Magnaporthe_poae_ATCC_64411_22 8 7
Magnaporthe_grisea_70-15_ 13 12
Podospora_anserina_ 10 10
Sporotrichum_thermophile_ATCC_42464_ 13 12
Thielavia_terrestris_NRRL_8126_ 11 10
Chaetomium_globosum_CBS_148.51_ 12 11
Neurospora_tetrasperma_ 14 12
Neurospora_discreta_FGSC_8579_ 13 12
Neurospora_crassa_OR74A_ 16 13
Cryphonectria_parasitica_   (Chestnut blight fungus)   11 10
Verticillium_albo-atrum_VaMs.102_ 8 7
Verticillium_dahliae_VdLs.17_ 12 11
Acremonium_alcalophilumv_1.0 11 10
Glomerella_graminicola_22 11 10
Fusarium_graminearum_ 12 11
Nectria_haematococca_mpVI_ 11 11
Fusarium_oxysporum_f._sp._lycopersici_4286_ 14 13
Fusarium_verticillioides_7600_ 10 9
Trichoderma_asperellum_CBS_433.97_v1.0 11 10
Trichoderma_atroviride_ 11 10
Trichoderma_citrinoviride_v1.0 10 9
Trichoderma_reesei_1.2 9 8
Trichoderma_virens_Gv29-8_ 14 12
Trichoderma_longibrachiatum_ATCC_18648_v1.0 11 10
Trichoderma_harzianum_CBS_226.95_v1.0 10 9
Amorphotheca_resinae_v1.0   (Creosote fungus)   11 10
Botrytis_cinerea_B05.10_ 11 10
Sclerotinia_sclerotiorum_ 9 9
Blumeria_graminis_22 7 7
Didymella_exigua_CBS_183.55_v1.0 12 11
Leptosphaeria_maculans_22 12 11
Setosphaeria_turcica_v1.0 12 11
Cochliobolus_miyabeanus_ATCC_44560_v1.0 13 12
Cochliobolus_victoriae_FI3_v1.0 14 13
Cochliobolus_carbonum_26-R-13_v1.0 12 11
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   8 8
Alternaria_brassicicola_ 10 10
Cochliobolus_lunatus_m118_v2.0 12 11
Pyrenophora_teres_f._teres_22 13 12
Pyrenophora_tritici-repentis_ 15 14
Stagonospora_nodorum_ 11 10
Mycosphaerella_graminicola_IPO323_ 9 8
Zasmidium_cellare_ATCC_36951_v1.0 11 10
Dothistroma_septosporum 11 10
Septoria_musiva_v1.0 8 7
Mycosphaerella_fijiensis_CIRAD86_ 9 8
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 12 11
Paracoccidioides_brasiliensis_Pb18_ 8 7
Coccidioides_posadasii_RMSCC_3488_ 6 5
Coccidioides_immitis_RS_ 8 7
Ajellomyces_dermatitidis_SLH14081_ 9 8
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 8 7
Microsporum_canis_CBS_113480_ 6 6
Trichophyton_equinum_CBS_127.97_ 6 6
Trichophyton_verrucosum_HKI_0517_ 6 6
Arthroderma_benhamiae_CBS_112371_ 7 7
Trichophyton_tonsurans_CBS_112818_ 6 6
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 7 6
Aspergillus_zonatus_v1.0 8 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 8 7
Penicillium_chrysogenum_v1.0 8 7
Aspergillus_acidus_v1.0 18 17
Aspergillus_fumigatus_Af293 8 7
Aspergillus_brasiliensis_v1.0 8 7
Aspergillus_nidulans_FGSC_A4_ 9 8
Aspergillus_sydowii_v1.0 8 7
Aspergillus_versicolor_v1.0 8 7
Aspergillus_glaucus 8 7
Aspergillus_carbonarius_ITEM_5010_ 7 6
Neosartorya_fischeri_NRRL_181_ 9 8
Aspergillus_terreus_NIH2624_ 7 6
Aspergillus_tubingensis_v1.0 6 6
Aspergillus_wentii_v1.0 9 8
Aspergillus_oryzae_RIB40_ 5 4
Aspergillus_niger_22 7 6
Aspergillus_niger_ATCC_1015_ 7 6
Aspergillus_flavus_NRRL3357_ 7 6
Aspergillus_clavatus_NRRL_1_ 6 6
Penicillium_marneffei_ATCC_18224_ 9 8
Tuber_melanosporum_Mel28_22 11 10
Tuber_melanosporum_Vittad_   (Perigord truffle)   11 10
Hansenula_polymorpha_v2.0 7 6
Dekkera_bruxellensis_CBS_2499_v2.0 7 6
Pichia_membranifaciensv1.0 7 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 7 6
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 5 5
Candida_parapsilosis_ 5 5
Candida_albicans_SC5314 6 6
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 11 8
Pichia_stipitis_CBS_6054_ 6 5
Candida_guilliermondii_ATCC_6260_ 6 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 7 6
Debaromyces_hansenii 7 6
Wickerhamomyces_anomalus 6 5
Pichia_pastoris_GS115_ 5 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 7 6
Yarrowia_lipolytica_CLIB122 8 8
Candida_lusitaniae_ATCC_42720_ 4 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 7 7
Vanderwaltozyma_polyspora_DSM_70294_ 10 8
Candida_glabrata_CBS138 10 8
Kluyveromyces_thermotolerans_CBS_6340 6 5
Lachancea_kluyveri_ 12 11
Kluyveromyces_waltii 7 6
Ashbya_gossypii_ATCC_10895_ 7 6
Zygosaccharomyces_rouxii_ 7 6
Saccharomyces_mikatae_MIT 9 7
Saccharomyces_paradoxus_MIT 9 7
Saccharomyces_cerevisiae_76   (Baker's yeast)   9 7
Saccharomyces_bayanus_MIT 7 5
Kluyveromyces_lactis 8 6
Schizosaccharomyces_cryophilus_OY26_22 10 10
Schizosaccharomyces_octosporus_yFS286_ 10 10
Schizosaccharomyces_japonicus_yFS275_ 12 11
Schizosaccharomyces_pombe   (Fission yeast)   12 12
Catenaria_anguillulae_PL171_v1.0 13 11
Allomyces_macrogynus_ATCC_38327_ 33 24
Spizellomyces_punctatus_DAOM_BR117_ 15 14
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 6 6
Entamoeba_dispar_1.2 14 14
Entamoeba_invadens_1.2 15 15
Entamoeba_histolytica_1 14 14
Selaginella_moellendorffii_ 20 16
Pinus_taeda   (Loblolly pine)   34 30
Picea_abies   (Norway spruce)   23 21
Eucalyptus_grandis_v201   (Rose gum)   44 42
Theobroma_cacao_B97-61/B2_v1   (Cacao)   25 23
Gossypium_raimondii_v221 99 93
Citrus_clementina_v165 39 38
Citrus_sinensis_v154   (Sweet orange)   79 78
Thellungiella_halophila_v173 32 28
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   41 37
Capsella_rubella_v183 30 26
Arabidopsis_lyrata_   (Lyrate rockcress)   26 23
Arabidopsis_thaliana_10   (Thale cress)   44 38
Carica_papaya_   (Papaya)   21 19
Medicago_truncatula_   (Barrel medic)   39 36
Phaseolus_vulgaris_v186   (French bean)   27 25
Glycine_max_v109   (Soybean)   81 75
Cucumis_sativus_v122   (Cucumber)   49 45
Fragaria_vesca_   (Wild strawberry)   28 26
Malus_domestica_v196   (Apple)   46 43
Prunus_persica_v139   (Peach)   29 27
Linum_usitatissimum_v200   (Flax)   57 45
Manihot_esculenta_v147   (Cassava)   39 37
Populus_trichocarpa_v156   (Black cottonwood)   38 34
Vitis_vinifera_   (Wine grape)   23 21
Mimulus_guttatus_v140   (Spotted monkey flower)   28 26
Solanum_lycopersicum_v.2.3   (Tomato)   24 22
Solanum_tuberosum_   (Potato)   46 40
Actinidia_chinensis_Hongyang_ 30 29
Aquilegia_coerulea_v195 35 33
Triticum_urartu_22 13 13
Triticum_aestivum_22   (Bread wheat)   49 46
Aegilops_tauschii_22 14 12
Brachypodium_distachyon_   (Stiff brome)   26 24
Oryza_barthii_22   (African wild rice)   21 19
Oryza_meridionalis_22 28 26
Oryza_glumaepatula_22 25 23
Oryza_glaberrima   (African rice)   11 11
Oryza_punctata_22 27 24
Oryza_nivara_22 25 23
Oryza_brachyantha_22   (Malo sina)   20 18
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   36 34
Oryza_sativa_v193   (Rice)   33 31
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   28 26
Panicum_virgatum_v202   (Switchgrass)   41 37
Setaria_italica_v164   (Foxtail millet)   24 22
Zea_mays_subsp._mays_   (Maize)   51 49
Zea_mays_v181   (Maize)   57 55
Sorghum_bicolor_   (Sorghum)   19 16
Musa_balbisiana   (Balbis banana)   37 33
Musa_acuminata_22   (Wild Malaysian banana)   48 44
Amborella_trichopoda_22 20 18
Physcomitrella_patens 15 11
Coccomyxa_subellipsoidea_sp._C-169_v2 13 9
Asterochloris_sp._Cgr/DA1pho_v1.0 7 7
Chlorella_variabilis_sp._NC64A_ 8 6
Chlorella_vulgaris_ 14 10
Volvox_carteri_f._nagariensis_ 13 11
Volvox_carteri_v199 13 10
Chlamydomonas_reinhardtii_4.0 15 11
Ostreococcus_sp._RCC809_ 9 9
Ostreococcus_lucimarinus_CCE9901_ 11 11
Ostreococcus_tauri_ 12 9
Bathycoccus_prasinos_ 14 11
Micromonas_sp._RCC299_ 17 14
Micromonas_pusilla_CCMP1545_v3.0 20 15
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 10 7
Bigelowiella_natans_CCMP2755_22 46 39
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 30 24
Leishmania_mexicana_2.4 8 5
Leishmania_major_strain_Friedlin_ 7 5
Leishmania_infantum_JPCM5_2.4 7 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 8 6
Trypanosoma_vivax_ 5 4
Trypanosoma_cruzi_strain_CL_Brener 9 6
Trypanosoma_congolense_2.4 9 7
Trypanosoma_brucei_gambiense_v4.1 7 6
Trypanosoma_brucei_TREU927_v4.1 7 6
Ectocarpus_siliculosus 16 13
Aureococcus_anophagefferens_ 18 16
Albugo_laibachii_22 11 8
Pythium_iwayamai_DAOM_BR242034_22 8 7
Pythium_arrhenomanes_ATCC_12531_22 10 7
Pythium_ultimum_v1.7-2 15 9
Pythium_aphanidermatum_DAOM_BR444_22 13 7
Pythium_irregulare_DAOM_BR486_22 16 9
Pythium_vexans_DAOM_BR484_22 16 10
Phytophthora_ramorum_1.1   (Sudden oak death agent)   16 9
Phytophthora_sojae_1.1 13 7
Phytophthora_infestans_T30-4_ 14 8
Phytophthora_capsici_ 20 13
Hyaloperonospora_arabidopsidis_22 10 8
Phaeodactylum_tricornutumCCAP_1055/1 44 36
Fragilariopsis_cylindrus 81 57
Thalassiosira_pseudonana_CCMP1335 55 51
Perkinsus_marinus_ATCC_50983_ 11 11
Paramecium_tetraurelia_ 44 38
Tetrahymena_thermophila_SB210_1_ 19 13
Ichthyophthirius_multifiliis_strain_G5_ 5 5
Cryptosporidium_hominis 4 4
Cryptosporidium_muris 4 4
Cryptosporidium_parvum_Iowa_II 4 4
Neospora_caninum 8 7
Toxoplasma_gondii_VEG 8 7
Toxoplasma_gondii_ME49 8 7
Toxoplasma_gondii_GT1 8 7
Babesia_bovis_T2Bo_ 16 16
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 5 4
Plasmodium_vivax_SaI-1_7.0 5 4
Plasmodium_knowlesi_strain_H_ 5 4
Plasmodium_yoelii_ssp._yoelii_1_ 4 3
Plasmodium_chabaudi_ 5 4
Plasmodium_berghei_ANKA_ 5 4
Symbiodinium_minutum_clade_B1_v1.2 61 28
Naegleria_gruberi_ 26 18
Trichomonas_vaginalis_ 56 47
Guillardia_theta_CCMP2712_v1.0_ 42 33
Emiliania_huxleyi_CCMP1516_ 41 41
Halothece_sp._PCC_7418 1 1
Clostridium_clariflavum_DSM_19732 1 1
Runella_slithyformis_DSM_19594 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Achromobacter_xylosoxidans_A8 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   167 142
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   64 56
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   25 23
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   27 26
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   31 27
Cryptococcus_neoformans_var._grubii_H99_ 11 9
Cryptococcus_neoformans_B-3501A_ 11 9
Cryptococcus_neoformans_JEC21_ 9 8
Paracoccidioides_brasiliensis_Pb01_ 6 6
Paracoccidioides_brasiliensis_Pb03_ 9 8
Coccidioides_posadasii_str._Silveira_ 7 6
Coccidioides_immitis_RMSCC_3703_ 6 5
Coccidioides_immitis_RMSCC_2394_ 7 6
Coccidioides_immitis_H538.4_ 6 5
Ajellomyces_dermatitidis_ER-3_ 9 8
Histoplasma_capsulatum_H143 8 7
Histoplasma_capsulatum_H88 8 7
Histoplasma_capsulatum_G186AR 10 9
Aspergillus_fumigatus_A1163_ 7 6
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 9 7
Saccharomyces_cerevisiae_PW5 7 6
Saccharomyces_cerevisiae_FL100 7 6
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 5 4
Saccharomyces_cerevisiae_YJM269 7 6
Saccharomyces_cerevisiae_T7 9 7
Saccharomyces_cerevisiae_FostersB 8 7
Saccharomyces_cerevisiae_FostersO 8 7
Saccharomyces_cerevisiae_VL3 8 7
Saccharomyces_cerevisiae_Vin13 9 7
Saccharomyces_cerevisiae_LalvinQA23 8 6
Saccharomyces_cerevisiae_AWRI796 7 6
Saccharomyces_cerevisiae_Sigma1278b 7 6
Saccharomyces_cerevisiae_W303 9 7
Saccharomyces_cerevisiae_JAY291 9 7
Saccharomyces_cerevisiae_AWRI1631 8 6
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_M22 4 3
Saccharomyces_cerevisiae_T73 5 4
Saccharomyces_cerevisiae_CLIB215 4 4
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 9 7
Saccharomyces_cerevisiae_YJM789 9 7
Saccharomyces_cerevisiae_RM11-1a 9 7
Saccharomyces_cerevisiae_RM11-1a_ 7 6
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   9 7
Schizosaccharomyces_pombe_972h-_ 10 10
Batrachochytrium_dendrobatidis_JEL423_ 10 8
Batrachochytrium_dendrobatidis_JAM81_ 10 9
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   27 24
Hordeum_vulgare_22   (Domesticated barley)   36 30
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   21 19
Trypanosoma_brucei_Lister_427_v4.1 7 6
Neospora_caninum_Nc-Liverpool_6.2 8 7
Plasmodium_falciparum_HB3_ 5 4
Plasmodium_falciparum_Dd2_ 3 2
Bacillus_cereus_Q1 1 1
Staphylococcus_pasteuri_SP1 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Dickeya_dadantii_3937 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   64 54
Pan_troglodytes_69_2.1.4   (Chimpanzee)   57 48
Gorilla_gorilla_69_3.1   (Western gorilla)   85 60
Pongo_abelii_69_2   (Sumatran orangutan)   68 53
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   58 47
Macaca_mulatta_69_1   (Rhesus monkey)   86 64
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   109 70
Otolemur_garnettii_69_3   (Small-eared galago)   112 78
Microcebus_murinus_69_1   (Gray mouse lemur)   57 43
Rattus_norvegicus_69_3.4   (Norway rat)   217 131
Mus_musculus_69_38   (House mouse)   67 55
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   47 38
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   60 46
Cavia_porcellus_69_3   (Domestic guinea pig)   68 53
Oryctolagus_cuniculus_69_2   (Rabbit)   84 59
Ochotona_princeps_69   (American pika)   41 34
Tupaia_belangeri_69   (Northern tree shrew)   65 47
Sus_scrofa_69_10.2   (Pig)   67 54
Bos_taurus_69_3.1   (Cattle)   72 55
Vicugna_pacos_69_1   (Alpaca)   30 27
Tursiops_truncatus_69_1   (Bottlenose dolphin)   52 42
Mustela_putorius_furo_69_1.0   (Domestic ferret)   65 51
Ailuropoda_melanoleuca_69_1   (Giant panda)   61 49
Canis_familiaris_69_3.1   (Dog)   60 51
Felis_catus_69   (Domestic cat)   39 33
Equus_caballus_69_2   (Horse)   55 43
Myotis_lucifugus_69_2.0   (Little brown bat)   58 45
Pteropus_vampyrus_69_1   (Large flying fox)   55 44
Sorex_araneus_69_1   (European shrew)   26 24
Erinaceus_europaeus_69   (Western European hedgehog)   46 34
Procavia_capensis_69_1   (Cape rock hyrax)   42 34
Loxodonta_africana_69_3   (African savanna elephant)   59 47
Echinops_telfairi_69   (Small Madagascar hedgehog)   57 47
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   36 28
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   29 25
Macropus_eugenii_69_1.0   (Tammar wallaby)   48 39
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   56 46
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   67 52
Ornithorhynchus_anatinus_69_5   (Platypus)   43 38
Petromyzon_marinus_69_7.0   (Sea lamprey)   34 24
Meleagris_gallopavo_69_2   (Turkey)   41 34
Gallus_gallus_69_2   (Chicken)   38 34
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   50 41
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   44 40
Anolis_carolinensis_69_2.0   (Green anole)   52 42
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   54 46
Latimeria_chalumnae_69_1   (Coelacanth)   62 49
Gadus_morhua_69_1   (Atlantic cod)   68 54
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   76 64
Takifugu_rubripes_69_4   (Torafugu)   73 58
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   70 54
Oryzias_latipes_69_1   (Japanese medaka)   69 59
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   78 62
Oreochromis_niloticus_69_1.0   (Nile tilapia)   80 64
Danio_rerio_69_9   (Zebrafish)   83 67
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   19 16
Ciona_intestinalis_69   (Vase tunicate)   30 22
Drosophila_melanogaster_69_5   (Fruit fly)   32 30
Caenorhabditis_elegans_69_215   (Roundworm)   20 18
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   9 7
Arabidopsis_thaliana_10   (Thale cress)   26 22

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   276 213
Homo_sapiens__(NCBI_version)   (Human)   121 99
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   67 54
Heliconius_numata__(Incomplete) 7 7
Loa_loa_v3.3_(Request)   (Eye worm)   25 23
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   25 23
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   23 21
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 6
Encephalitozoon_intestinalis__(endoparasite) 3 2
Encephalitozoon_cuniculi_(endoparasite) 3 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4 4
Lotus_japonicus__(Early_assembly) 17 15
Malus_x_domestica_(Duplicate)   (Apple)   46 43
Ricinus_communis__(Early_assembly)   (Castor bean)   22 20
Nicotiana_benthamiana_0.4.4_(Early_draft) 40 35
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   24 22
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   24 22
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 16
NCBI_viral_sequences_(Viral) 31 21
Protein_Data_Bank_(all_PDB_sequenc) 127 97
Protozoadb_2010_08_(Protozoadb) 316 272
STRING_v9.0.5_(STRING) 3480 2838
Uniprot_2018_03_genome 44963 38049
NCBI_2017_08_genome 52058 43918
PDB_chains_(SCOP_1.75)_(PDB) 25 24
TargetDB__(Targets) 106 93
UniProt__viral_sequences_(Viral) 18 13
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 236 236

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]