SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Histone-fold superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Histone-fold domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   236 232
Pan_troglodytes_76_2.1.4   (Chimpanzee)   97 96
Gorilla_gorilla_76_3.1   (Western gorilla)   102 101
Pongo_abelii_76_2   (Sumatran orangutan)   99 98
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   91 90
Papio_anubis_76   (Olive baboon)   98 96
Macaca_mulatta_76_1   (Rhesus monkey)   139 138
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   146 146
Otolemur_garnettii_76_3   (Small-eared galago)   104 103
Microcebus_murinus_76_1   (Gray mouse lemur)   84 83
Rattus_norvegicus_76_5.0   (Norway rat)   106 105
Mus_musculus_76_38   (House mouse)   180 177
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   83 81
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   87 86
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   127 122
Cavia_porcellus_76_3   (Domestic guinea pig)   81 80
Oryctolagus_cuniculus_76_2   (Rabbit)   93 92
Ochotona_princeps_76   (American pika)   90 89
Tupaia_belangeri_76   (Northern tree shrew)   51 50
Sus_scrofa_76_10.2   (Pig)   92 90
Bos_taurus_76_3.1   (Cattle)   183 181
Ovis_aries_76_3.1   (Sheep)   112 109
Vicugna_pacos_76_1   (Alpaca)   60 60
Tursiops_truncatus_76_1   (Bottlenose dolphin)   93 91
Mustela_putorius_furo_76_1.0   (Domestic ferret)   64 62
Ailuropoda_melanoleuca_76_1   (Giant panda)   106 105
Canis_familiaris_76_3.1   (Dog)   110 108
Felis_catus_76_6.2   (Domestic cat)   99 97
Equus_caballus_76_2   (Horse)   99 97
Myotis_lucifugus_76_2.0   (Little brown bat)   97 96
Pteropus_vampyrus_76_1   (Large flying fox)   78 77
Sorex_araneus_76_1   (European shrew)   97 96
Erinaceus_europaeus_76   (Western European hedgehog)   74 73
Procavia_capensis_76_1   (Cape rock hyrax)   72 72
Loxodonta_africana_76_3   (African savanna elephant)   117 116
Echinops_telfairi_76   (Small Madagascar hedgehog)   73 72
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   108 105
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   67 66
Macropus_eugenii_76_1.0   (Tammar wallaby)   54 54
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   66 66
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   56 55
Ornithorhynchus_anatinus_76_5   (Platypus)   137 135
Saccoglossus_kowalevskii_v3.0 173 161
Petromyzon_marinus_76_7.0   (Sea lamprey)   56 56
Meleagris_gallopavo_76_2   (Turkey)   44 44
Gallus_gallus_76_4   (Chicken)   50 49
Anas_platyrhynchos_76_1.0   (Mallard)   58 57
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   75 74
Ficedula_albicollis_76_1.0   (Collared flycatcher)   49 48
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   76 74
Anolis_carolinensis_76_2.0   (Green anole)   61 61
Xenopus_laevis_   (African clawed frog)   498 496
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   176 173
Latimeria_chalumnae_76_1   (Coelacanth)   62 59
Lepisosteus_oculatus_76   (Spotted gar)   51 48
Gadus_morhua_76_1   (Atlantic cod)   120 116
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   84 81
Takifugu_rubripes_76_4   (Torafugu)   194 187
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   167 166
Oryzias_latipes_76_1   (Japanese medaka)   76 76
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   48 46
Poecilia_formosa_76   (Amazon molly)   70 66
Oreochromis_niloticus_76_1.0   (Nile tilapia)   71 69
Astyanax_mexicanus_76   (Mexican tetra)   49 46
Danio_rerio_76_9   (Zebrafish)   204 199
Oikopleura_dioica 52 51
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   44 39
Ciona_intestinalis_76   (Vase tunicate)   20 20
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   385 382
Adineta_vaga 92 92
Octopus_bimaculoides_280 101 100
Crassostrea_gigas_22   (Pacific oyster)   55 55
Lottia_gigantea_   (Owl limpet)   120 118
Helobdella_robusta_ 61 61
Capitella_sp._I_ 123 110
Danaus_plexippus_OGS1.0   (Monarch butterfly)   28 28
Heliconius_melpomene_   (Postman butterfly)   26 24
Bombyx_mori_   (Domestic silkworm)   20 20
Nasonia_vitripennis_   (Jewel wasp)   91 91
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   49 49
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   33 33
Linepithema_humile_v1.1   (Argentine ant)   37 36
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   37 37
Solenopsis_invicta_v.2.2.3   (Red fire ant)   22 22
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   36 36
Atta_cephalotes_v1.1 39 38
Camponotus_floridanus_v3.3   (Florida carpenter ant)   38 38
Lucilia_cuprina   (Australian sheep blowfly)   30 30
Drosophila_grimshawi_1.3 169 169
Drosophila_willistoni_1.3 58 58
Drosophila_pseudoobscura_2.13 30 30
Drosophila_persimilis_1.3 60 60
Drosophila_suzukii 50 48
Drosophila_yakuba_1.3 33 33
Drosophila_simulans_1.3 88 88
Drosophila_sechellia_1.3 336 335
Drosophila_melanogaster_76_5   (Fruit fly)   133 133
Drosophila_erecta_1.3 167 167
Drosophila_ananassae_1.3 109 108
Drosophila_virilis_1.2 108 108
Drosophila_mojavensis_1.3 73 73
Megaselia_scalaris_22 30 29
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   86 86
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   123 123
Anopheles_darlingi_22   (American malaria mosquito)   21 21
Anopheles_gambiae_49_3j   (African malaria mosquito)   56 56
Tribolium_castaneum_3.0   (Red flour beetle)   35 35
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   41 41
Acyrthosiphon_pisum_   (Pea aphid)   34 34
Rhodnius_prolixus_22 38 38
Daphnia_pulex_   (Common water flea)   129 129
Strigamia_maritima_22 54 52
Sarcoptes_scabiei 29 29
Tetranychus_urticae_   (Two-spotted spider mite)   38 37
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   25 25
Pristionchus_pacificus_ 32 31
Meloidogyne_incognita_   (Southern root-knot nematode)   57 57
Meloidogyne_hapla_ 24 24
Onchocerca_volvulus_22 40 38
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   55 55
Caenorhabditis_japonica_ 39 39
Caenorhabditis_brenneri_ 167 167
Caenorhabditis_remanei_ 89 89
Caenorhabditis_elegans_76_235   (Roundworm)   100 100
Caenorhabditis_briggsae_2 67 67
Trichinella_spiralis_22 82 82
Hymenolepis_microstoma_ 32 32
Echinococcus_multilocularis_ 89 89
Echinococcus_granulosus_ 34 34
Taenia_solium_   (Pork tapeworm)   57 57
Schistosoma_mansoni_ 45 45
Mnemiopsis_leidyi   (Sea walnut)   20 20
Thelohanellus_kitauei 13 13
Acropora_digitifera_v1.0 31 29
Nematostella_vectensis_1.0   (Starlet sea anemone)   191 181
Hydra_vulgaris 32 32
Amphimedon_queenslandica 41 41
Trichoplax_adhaerens_ 24 24
Proterospongia_sp._ATCC_50818_ 26 26
Monosiga_brevicollis_ 18 18
Sphaeroforma_arctica_JP610_ 33 33
Capsaspora_owczarzaki_ATCC_30864_ 33 33
Conidiobolus_coronatus_NRRL28638_v1.0 25 24
Mortierella_verticillata_NRRL_6337_ 33 33
Phycomyces_blakesleeanus_ 37 36
Rhizopus_oryzae_RA_99-880_ 31 31
Mucor_circinelloides_ 27 27
Rhizomucor_miehei_CAU432_ 32 31
Malassezia_globosa_CBS_7966_ 32 32
Sporisorium_reilianum_22 22 22
Ustilago_maydis_ 20 20
Mixia_osmundae_IAM_14324_v1.0 26 25
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 29 29
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 38 37
Melampsora_laricis-populina_ 35 35
Rhodotorula_graminis_WP1_v1.0 31 31
Sporobolomyces_roseus_IAM_13481_ 31 31
Microbotryum_violaceum_22 38 38
Wallemia_sebi_v1.0 31 31
Sphaerobolus_stellatus_v1.0 37 37
Piloderma_croceum_F_1598_v1.0 36 36
Serpula_lacrymans_var._lacrymans_S7.9_ 30 30
Coniophora_puteana 31 31
Hydnomerulius_pinastri_v2.0 36 35
Paxillus_rubicundulus_Ve08.2h10_v1.0 33 33
Pisolithus_microcarpus_441_v1.0 32 32
Pisolithus_tinctorius_Marx_270_v1.0 29 29
Scleroderma_citrinum_Foug_A_v1.0 40 40
Coprinopsis_cinerea_okayama7_130_v3 30 30
Pleurotus_ostreatus_   (Oyster mushroom)   33 33
Amanita_thiersii_Skay4041_v1.0 29 29
Amanita_muscaria_Koide_v1.0   (Fly agaric)   33 33
Galerina_marginata_v1.0 29 29
Hebeloma_cylindrosporum_h7_v2.0 31 31
Laccaria_bicolor_S238N-H82_ 58 58
Agaricus_bisporus_var._bisporus_ 33 33
Schizophyllum_commune_ 35 35
Stereum_hirsutum_FP-91666_SS1__v1.0 29 29
Heterobasidion_annosum_ 29 29
Gloeophyllum_trabeumv1.0 29 28
Punctularia_strigosozonata_v1.0 27 27
Sebacina_vermifera_MAFF_305830_v1.0 30 30
Fomitiporia_mediterranea_v1.0 30 30
Tulasnella_calospora_AL13/4D_v1.0 34 34
Postia_placenta_ 40 40
Wolfiporia_cocos_MD-104_SS10__v1.0 29 29
Fomitopsis_pinicolav1.0 29 29
Fomitopsis_pinicola_FP-58527_SS1_v3.0 28 28
Phanerochaete_chrysosporium_RP-78_2.1 28 28
Dichomitus_squalens 32 31
Trametes_versicolor_v1.0 25 25
Tremella_mesenterica_   (Witches' butter)   22 22
Daldinia_eschscholzii_EC12_v1.0 24 22
Apiospora_montagnei_NRRL_25634_v1.0 24 23
Magnaporthe_poae_ATCC_64411_22 25 24
Magnaporthe_grisea_70-15_ 26 24
Podospora_anserina_ 23 21
Sporotrichum_thermophile_ATCC_42464_ 24 23
Thielavia_terrestris_NRRL_8126_ 25 23
Chaetomium_globosum_CBS_148.51_ 25 23
Neurospora_tetrasperma_ 23 22
Neurospora_discreta_FGSC_8579_ 24 22
Neurospora_crassa_OR74A_ 26 25
Cryphonectria_parasitica_   (Chestnut blight fungus)   24 23
Verticillium_albo-atrum_VaMs.102_ 18 18
Verticillium_dahliae_VdLs.17_ 23 22
Acremonium_alcalophilumv_1.0 23 22
Glomerella_graminicola_22 24 23
Fusarium_graminearum_ 24 22
Nectria_haematococca_mpVI_ 26 24
Fusarium_oxysporum_f._sp._lycopersici_4286_ 27 25
Fusarium_verticillioides_7600_ 25 23
Trichoderma_asperellum_CBS_433.97_v1.0 27 25
Trichoderma_atroviride_ 25 23
Trichoderma_citrinoviride_v1.0 23 21
Trichoderma_reesei_1.2 24 22
Trichoderma_virens_Gv29-8_ 26 24
Trichoderma_longibrachiatum_ATCC_18648_v1.0 24 22
Trichoderma_harzianum_CBS_226.95_v1.0 27 25
Amorphotheca_resinae_v1.0   (Creosote fungus)   25 23
Botrytis_cinerea_B05.10_ 23 22
Sclerotinia_sclerotiorum_ 23 21
Blumeria_graminis_22 25 23
Didymella_exigua_CBS_183.55_v1.0 25 24
Leptosphaeria_maculans_22 23 22
Setosphaeria_turcica_v1.0 25 24
Cochliobolus_miyabeanus_ATCC_44560_v1.0 24 23
Cochliobolus_victoriae_FI3_v1.0 24 23
Cochliobolus_carbonum_26-R-13_v1.0 24 23
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   22 21
Alternaria_brassicicola_ 17 16
Cochliobolus_lunatus_m118_v2.0 24 23
Pyrenophora_teres_f._teres_22 24 23
Pyrenophora_tritici-repentis_ 49 48
Stagonospora_nodorum_ 23 23
Mycosphaerella_graminicola_IPO323_ 19 19
Zasmidium_cellare_ATCC_36951_v1.0 26 25
Dothistroma_septosporum 22 21
Septoria_musiva_v1.0 42 42
Mycosphaerella_fijiensis_CIRAD86_ 36 36
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 24 23
Paracoccidioides_brasiliensis_Pb18_ 24 23
Coccidioides_posadasii_RMSCC_3488_ 22 21
Coccidioides_immitis_RS_ 38 37
Ajellomyces_dermatitidis_SLH14081_ 32 31
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 20 19
Microsporum_canis_CBS_113480_ 24 23
Trichophyton_equinum_CBS_127.97_ 24 23
Trichophyton_verrucosum_HKI_0517_ 20 19
Arthroderma_benhamiae_CBS_112371_ 20 19
Trichophyton_tonsurans_CBS_112818_ 22 21
Trichophyton_rubrum_CBS_118892_ 24 23
Uncinocarpus_reesii_1704_ 19 18
Aspergillus_zonatus_v1.0 24 23
Penicillium_chrysogenum_Wisconsin_54-1255_ 23 22
Penicillium_chrysogenum_v1.0 22 21
Aspergillus_acidus_v1.0 24 23
Aspergillus_fumigatus_Af293 22 21
Aspergillus_brasiliensis_v1.0 23 22
Aspergillus_nidulans_FGSC_A4_ 23 22
Aspergillus_sydowii_v1.0 23 22
Aspergillus_versicolor_v1.0 23 22
Aspergillus_glaucus 24 23
Aspergillus_carbonarius_ITEM_5010_ 23 22
Neosartorya_fischeri_NRRL_181_ 23 22
Aspergillus_terreus_NIH2624_ 22 21
Aspergillus_tubingensis_v1.0 24 23
Aspergillus_wentii_v1.0 24 23
Aspergillus_oryzae_RIB40_ 23 21
Aspergillus_niger_22 22 21
Aspergillus_niger_ATCC_1015_ 14 13
Aspergillus_flavus_NRRL3357_ 24 22
Aspergillus_clavatus_NRRL_1_ 23 22
Penicillium_marneffei_ATCC_18224_ 27 26
Tuber_melanosporum_Mel28_22 25 23
Tuber_melanosporum_Vittad_   (Perigord truffle)   27 25
Hansenula_polymorpha_v2.0 24 23
Dekkera_bruxellensis_CBS_2499_v2.0 26 25
Pichia_membranifaciensv1.0 24 23
Candida_tanzawaensis_NRRL_Y-17324__v1.0 27 27
Candida_dubliniensis_CD36_ 28 27
Candida_tropicalis_MYA-3404_ 28 27
Candida_parapsilosis_ 24 23
Candida_albicans_SC5314 26 25
Lodderomyces_elongisporus_NRRL_YB-4239_ 24 23
Babjeviella_inositovora_NRRL_Y-12698_v1.0 25 25
Pichia_stipitis_CBS_6054_ 28 27
Candida_guilliermondii_ATCC_6260_ 23 23
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 27 26
Debaromyces_hansenii 27 26
Wickerhamomyces_anomalus 23 22
Pichia_pastoris_GS115_ 20 20
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 15 15
Yarrowia_lipolytica_CLIB122 25 24
Candida_lusitaniae_ATCC_42720_ 24 22
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 25 24
Vanderwaltozyma_polyspora_DSM_70294_ 23 23
Candida_glabrata_CBS138 27 27
Kluyveromyces_thermotolerans_CBS_6340 23 23
Lachancea_kluyveri_ 23 23
Kluyveromyces_waltii 23 23
Ashbya_gossypii_ATCC_10895_ 22 22
Zygosaccharomyces_rouxii_ 22 22
Saccharomyces_mikatae_MIT 24 24
Saccharomyces_paradoxus_MIT 23 23
Saccharomyces_cerevisiae_76   (Baker's yeast)   24 24
Saccharomyces_bayanus_MIT 23 23
Kluyveromyces_lactis 24 23
Schizosaccharomyces_cryophilus_OY26_22 26 26
Schizosaccharomyces_octosporus_yFS286_ 26 26
Schizosaccharomyces_japonicus_yFS275_ 26 26
Schizosaccharomyces_pombe   (Fission yeast)   25 25
Catenaria_anguillulae_PL171_v1.0 25 25
Allomyces_macrogynus_ATCC_38327_ 40 38
Spizellomyces_punctatus_DAOM_BR117_ 31 31
Dictyostelium_discoideum 29 29
Dictyostelium_purpureum_ 30 29
Entamoeba_dispar_1.2 25 25
Entamoeba_invadens_1.2 26 26
Entamoeba_histolytica_1 22 22
Selaginella_moellendorffii_ 76 76
Pinus_taeda   (Loblolly pine)   244 224
Picea_abies   (Norway spruce)   131 129
Eucalyptus_grandis_v201   (Rose gum)   87 87
Theobroma_cacao_B97-61/B2_v1   (Cacao)   67 67
Gossypium_raimondii_v221 208 208
Citrus_clementina_v165 89 89
Citrus_sinensis_v154   (Sweet orange)   118 118
Thellungiella_halophila_v173 79 79
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   112 112
Capsella_rubella_v183 78 78
Arabidopsis_lyrata_   (Lyrate rockcress)   108 103
Arabidopsis_thaliana_10   (Thale cress)   121 121
Carica_papaya_   (Papaya)   48 48
Medicago_truncatula_   (Barrel medic)   164 164
Phaseolus_vulgaris_v186   (French bean)   103 103
Glycine_max_v109   (Soybean)   177 177
Cucumis_sativus_v122   (Cucumber)   90 90
Fragaria_vesca_   (Wild strawberry)   87 87
Malus_domestica_v196   (Apple)   190 189
Prunus_persica_v139   (Peach)   68 68
Linum_usitatissimum_v200   (Flax)   134 132
Manihot_esculenta_v147   (Cassava)   102 102
Populus_trichocarpa_v156   (Black cottonwood)   127 126
Vitis_vinifera_   (Wine grape)   73 73
Mimulus_guttatus_v140   (Spotted monkey flower)   146 146
Solanum_lycopersicum_v.2.3   (Tomato)   131 129
Solanum_tuberosum_   (Potato)   149 149
Actinidia_chinensis_Hongyang_ 95 94
Aquilegia_coerulea_v195 101 101
Triticum_urartu_22 165 161
Triticum_aestivum_22   (Bread wheat)   489 489
Aegilops_tauschii_22 159 158
Brachypodium_distachyon_   (Stiff brome)   113 111
Oryza_barthii_22   (African wild rice)   96 95
Oryza_meridionalis_22 102 91
Oryza_glumaepatula_22 96 94
Oryza_glaberrima   (African rice)   73 73
Oryza_punctata_22 99 97
Oryza_nivara_22 113 110
Oryza_brachyantha_22   (Malo sina)   79 77
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   105 105
Oryza_sativa_v193   (Rice)   99 99
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   87 86
Panicum_virgatum_v202   (Switchgrass)   190 190
Setaria_italica_v164   (Foxtail millet)   100 100
Zea_mays_subsp._mays_   (Maize)   221 220
Zea_mays_v181   (Maize)   223 222
Sorghum_bicolor_   (Sorghum)   99 98
Musa_balbisiana   (Balbis banana)   109 109
Musa_acuminata_22   (Wild Malaysian banana)   112 112
Amborella_trichopoda_22 60 60
Physcomitrella_patens 77 77
Coccomyxa_subellipsoidea_sp._C-169_v2 47 47
Asterochloris_sp._Cgr/DA1pho_v1.0 36 36
Chlorella_variabilis_sp._NC64A_ 43 43
Chlorella_vulgaris_ 44 43
Volvox_carteri_f._nagariensis_ 63 61
Volvox_carteri_v199 65 65
Chlamydomonas_reinhardtii_4.0 136 136
Ostreococcus_sp._RCC809_ 26 26
Ostreococcus_lucimarinus_CCE9901_ 23 23
Ostreococcus_tauri_ 25 25
Bathycoccus_prasinos_ 28 28
Micromonas_sp._RCC299_ 28 28
Micromonas_pusilla_CCMP1545_v3.0 29 29
Cyanidioschyzon_merolae_strain_10D_22 19 19
Cyanidioschyzon_merolae 22 22
Porphyridium_purpureum_02_2012 23 23
Thecamonas_trahens_ATCC_50062_ 38 30
Bigelowiella_natans_CCMP2755_22 38 37
Giardia_lamblia_2.3 15 15
Cyanophora_paradoxa_ 41 41
Leishmania_mexicana_2.4 27 27
Leishmania_major_strain_Friedlin_ 31 31
Leishmania_infantum_JPCM5_2.4 24 24
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 35 35
Trypanosoma_vivax_ 41 41
Trypanosoma_cruzi_strain_CL_Brener 26 26
Trypanosoma_congolense_2.4 17 17
Trypanosoma_brucei_gambiense_v4.1 34 34
Trypanosoma_brucei_TREU927_v4.1 50 50
Ectocarpus_siliculosus 50 50
Aureococcus_anophagefferens_ 55 55
Albugo_laibachii_22 25 25
Pythium_iwayamai_DAOM_BR242034_22 21 21
Pythium_arrhenomanes_ATCC_12531_22 19 19
Pythium_ultimum_v1.7-2 35 35
Pythium_aphanidermatum_DAOM_BR444_22 25 25
Pythium_irregulare_DAOM_BR486_22 22 22
Pythium_vexans_DAOM_BR484_22 22 21
Phytophthora_ramorum_1.1   (Sudden oak death agent)   29 29
Phytophthora_sojae_1.1 24 24
Phytophthora_infestans_T30-4_ 28 28
Phytophthora_capsici_ 31 31
Hyaloperonospora_arabidopsidis_22 25 25
Phaeodactylum_tricornutumCCAP_1055/1 23 23
Fragilariopsis_cylindrus 48 48
Thalassiosira_pseudonana_CCMP1335 34 34
Perkinsus_marinus_ATCC_50983_ 108 107
Paramecium_tetraurelia_ 62 62
Tetrahymena_thermophila_SB210_1_ 20 20
Ichthyophthirius_multifiliis_strain_G5_ 27 27
Cryptosporidium_hominis 12 12
Cryptosporidium_muris 13 13
Cryptosporidium_parvum_Iowa_II 12 12
Neospora_caninum 10 10
Toxoplasma_gondii_VEG 11 11
Toxoplasma_gondii_ME49 12 12
Toxoplasma_gondii_GT1 11 11
Babesia_bovis_T2Bo_ 22 22
Theileria_parva__ 12 12
Theileria_annulata 13 13
Plasmodium_falciparum_3D7_ 12 12
Plasmodium_vivax_SaI-1_7.0 12 12
Plasmodium_knowlesi_strain_H_ 12 12
Plasmodium_yoelii_ssp._yoelii_1_ 9 9
Plasmodium_chabaudi_ 12 12
Plasmodium_berghei_ANKA_ 12 12
Symbiodinium_minutum_clade_B1_v1.2 17 17
Naegleria_gruberi_ 32 32
Trichomonas_vaginalis_ 91 91
Guillardia_theta_CCMP2712_v1.0_ 40 40
Emiliania_huxleyi_CCMP1516_ 81 79
Anabaena_variabilis_ATCC_29413 1 1
Nostoc_punctiforme_PCC_73102 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Nakamurella_multipartita_DSM_44233 1 1
Frankia_alni_ACN14a 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_jostii_RHA1 3 3
Rhodococcus_opacus_B4 1 1
Micrococcus_luteus_NCTC_2665 1 1
Oceanithermus_profundus_DSM_14977 1 1
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 1 1
Thermus_thermophilus_HB27 1 1
Rhodothermus_marinus_DSM_4252 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Simkania_negevensis_Z 2 2
Thermovibrio_ammonificans_HB-1 1 1
Persephonella_marina_EX-H1 1 1
Aquifex_aeolicus_VF5 2 2
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Nautilia_profundicola_AmH 1 1
Nitratifractor_salsuginis_DSM_16511 1 1
Nitratiruptor_sp._SB155-2 1 1
Nanoarchaeum_equitans_Kin4-M 2 2
Candidatus_Caldiarchaeum_subterraneum 2 2
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 2 2
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
halophilic_archaeon_DL31 4 3
Methanocella_arvoryzae_MRE50 2 2
Methanocella_conradii_HZ254 2 2
Methanocella_paludicola_SANAE 2 2
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 1 1
Methanospirillum_hungatei_JF-1 5 5
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 2 2
Methanoculleus_marisnigri_JR1 2 2
Methanopyrus_kandleri_AV19 3 3
Ferroglobus_placidus_DSM_10642 2 2
Archaeoglobus_profundus_DSM_5631 3 3
Archaeoglobus_veneficus_SNP6 3 3
Archaeoglobus_fulgidus_DSM_4304 2 2
Thermococcus_sp._4557 4 4
Thermococcus_onnurineus_NA1 3 3
Thermococcus_kodakarensis_KOD1 4 4
Thermococcus_gammatolerans_EJ3 4 4
Thermococcus_sibiricus_MM_739 3 3
Thermococcus_barophilus_MP 3 3
Pyrococcus_sp._ST04 2 2
Pyrococcus_yayanosii_CH1 2 2
Pyrococcus_horikoshii_OT3 2 2
Pyrococcus_abyssi_GE5 2 2
Pyrococcus_furiosus_COM1 4 4
Salinarchaeum_sp._Harcht-Bsk1 3 2
Halopiger_xanaduensis_SH-6 3 2
Haloterrigena_turkmenica_DSM_5511 3 2
Natrinema_sp._J7-2 4 3
Natrialba_magadii_ATCC_43099 3 2
Halorubrum_lacusprofundi_ATCC_49239 3 2
Haloquadratum_walsbyi_DSM_16790 3 2
Halogeometricum_borinquense_DSM_11551 3 2
Haloferax_mediterranei_ATCC_33500 3 2
Haloferax_volcanii_DS2 5 4
Halomicrobium_mukohataei_DSM_12286 3 2
Halorhabdus_utahensis_DSM_12940 3 2
Natronomonas_pharaonis_DSM_2160 3 2
Haloarcula_hispanica_ATCC_33960 2 2
Haloarcula_marismortui_ATCC_43049 4 3
Halalkalicoccus_jeotgali_B3 6 5
Halobacterium_salinarum_R1 5 4
Halobacterium_sp._NRC-1 5 4
Methanotorris_igneus_Kol_5 4 4
Methanocaldococcus_sp._FS406-22 5 5
Methanocaldococcus_fervens_AG86 5 5
Methanocaldococcus_vulcanius_M7 6 6
methanocaldococcus_infernus_ME 3 3
Methanocaldococcus_jannaschii_DSM_2661 6 6
Methanothermococcus_okinawensis_IH1 3 3
Methanococcus_aeolicus_Nankai-3 3 3
Methanococcus_maripaludis_C5 3 3
Methanococcus_voltae_A3 3 3
Methanococcus_vannielii_SB 3 3
Methanothermus_fervidus_DSM_2088 2 2
Methanothermobacter_marburgensis_str._Marburg 3 3
Methanothermobacter_thermautotrophicus_str._Delta_H 3 3
Methanosphaera_stadtmanae_DSM_3091 6 6
Methanobrevibacter_sp._AbM4 3 3
Methanobrevibacter_ruminantium_M1 6 6
Methanobrevibacter_smithii_ATCC_35061 3 3
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   273 265
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   126 126
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   56 56
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   42 42
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   90 90
Cryptococcus_neoformans_var._grubii_H99_ 21 21
Cryptococcus_neoformans_B-3501A_ 22 22
Cryptococcus_neoformans_JEC21_ 17 17
Paracoccidioides_brasiliensis_Pb01_ 36 35
Paracoccidioides_brasiliensis_Pb03_ 24 23
Coccidioides_posadasii_str._Silveira_ 26 25
Coccidioides_immitis_RMSCC_3703_ 20 20
Coccidioides_immitis_RMSCC_2394_ 22 21
Coccidioides_immitis_H538.4_ 20 20
Ajellomyces_dermatitidis_ER-3_ 40 39
Histoplasma_capsulatum_H143 17 17
Histoplasma_capsulatum_H88 20 20
Histoplasma_capsulatum_G186AR 23 22
Aspergillus_fumigatus_A1163_ 23 22
Candida_albicans_WO-1_ 27 26
Saccharomyces_cerevisiae_UC5 19 19
Saccharomyces_cerevisiae_PW5 18 18
Saccharomyces_cerevisiae_FL100 17 17
Saccharomyces_cerevisiae_CLIB382 8 8
Saccharomyces_cerevisiae_CLIB324 15 15
Saccharomyces_cerevisiae_CBS7960 18 18
Saccharomyces_cerevisiae_YJM269 22 22
Saccharomyces_cerevisiae_T7 24 24
Saccharomyces_cerevisiae_FostersB 23 23
Saccharomyces_cerevisiae_FostersO 21 21
Saccharomyces_cerevisiae_VL3 23 23
Saccharomyces_cerevisiae_Vin13 22 22
Saccharomyces_cerevisiae_LalvinQA23 22 22
Saccharomyces_cerevisiae_AWRI796 21 21
Saccharomyces_cerevisiae_Sigma1278b 24 24
Saccharomyces_cerevisiae_W303 24 24
Saccharomyces_cerevisiae_JAY291 24 24
Saccharomyces_cerevisiae_AWRI1631 18 18
Saccharomyces_cerevisiae_YPS163 13 13
Saccharomyces_cerevisiae_M22 12 12
Saccharomyces_cerevisiae_T73 14 14
Saccharomyces_cerevisiae_CLIB215 19 19
Saccharomyces_cerevisiae_Y10 12 12
Saccharomyces_cerevisiae_YJM789_ 22 22
Saccharomyces_cerevisiae_YJM789 24 24
Saccharomyces_cerevisiae_RM11-1a 24 24
Saccharomyces_cerevisiae_RM11-1a_ 24 24
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   24 24
Schizosaccharomyces_pombe_972h-_ 25 25
Batrachochytrium_dendrobatidis_JEL423_ 20 19
Batrachochytrium_dendrobatidis_JAM81_ 21 20
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   67 67
Hordeum_vulgare_22   (Domesticated barley)   100 100
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   94 94
Trypanosoma_brucei_Lister_427_v4.1 50 50
Neospora_caninum_Nc-Liverpool_6.2 10 10
Plasmodium_falciparum_HB3_ 12 12
Plasmodium_falciparum_Dd2_ 4 4
Frankia_sp._EuI1c 1 1
Streptomyces_collinus_Tu_365 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Rhodococcus_erythropolis_CCM2595 1 1
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_SG0.5JP17-16 1 1
Thermus_thermophilus_HB8 1 1
Bacillus_cereus_ATCC_10987 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Methanomethylovorans_hollandica_DSM_15978 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2 2
Archaeoglobus_sulfaticallidus_PM70-1 3 3
Thermococcus_sp._AM4 4 4
Thermococcus_sp._CL1 4 4
Thermococcus_litoralis_DSM_5473 3 3
Pyrococcus_sp._NA2 2 2
Pyrococcus_furiosus_DSM_3638 4 4
Halovivax_ruber_XH-70 3 2
Natrinema_pellirubrum_DSM_15624 4 3
Natronococcus_occultus_SP4 3 2
Natronobacterium_gregoryi_SP2 3 2
Haloquadratum_walsbyi_C23 3 2
Halorhabdus_tiamatea_SARL4B 3 2
Natronomonas_moolapensis_8.8.11 3 2
Haloarcula_hispanica_N601 2 2
Methanococcus_maripaludis_X1 3 3
Methanococcus_maripaludis_C6 3 3
Methanococcus_maripaludis_C7 3 3
Methanococcus_maripaludis_S2 3 3
Methanobacterium_sp._SWAN-1 3 3

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   121 119
Pan_troglodytes_69_2.1.4   (Chimpanzee)   95 94
Gorilla_gorilla_69_3.1   (Western gorilla)   98 97
Pongo_abelii_69_2   (Sumatran orangutan)   97 96
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   92 91
Macaca_mulatta_69_1   (Rhesus monkey)   125 124
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   101 101
Otolemur_garnettii_69_3   (Small-eared galago)   104 103
Microcebus_murinus_69_1   (Gray mouse lemur)   84 83
Rattus_norvegicus_69_3.4   (Norway rat)   93 92
Mus_musculus_69_38   (House mouse)   120 118
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   83 81
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   86 85
Cavia_porcellus_69_3   (Domestic guinea pig)   80 79
Oryctolagus_cuniculus_69_2   (Rabbit)   94 93
Ochotona_princeps_69   (American pika)   90 89
Tupaia_belangeri_69   (Northern tree shrew)   51 50
Sus_scrofa_69_10.2   (Pig)   88 86
Bos_taurus_69_3.1   (Cattle)   180 178
Vicugna_pacos_69_1   (Alpaca)   60 60
Tursiops_truncatus_69_1   (Bottlenose dolphin)   93 91
Mustela_putorius_furo_69_1.0   (Domestic ferret)   62 60
Ailuropoda_melanoleuca_69_1   (Giant panda)   101 100
Canis_familiaris_69_3.1   (Dog)   100 98
Felis_catus_69   (Domestic cat)   58 57
Equus_caballus_69_2   (Horse)   97 96
Myotis_lucifugus_69_2.0   (Little brown bat)   94 93
Pteropus_vampyrus_69_1   (Large flying fox)   78 77
Sorex_araneus_69_1   (European shrew)   97 96
Erinaceus_europaeus_69   (Western European hedgehog)   74 73
Procavia_capensis_69_1   (Cape rock hyrax)   72 72
Loxodonta_africana_69_3   (African savanna elephant)   110 109
Echinops_telfairi_69   (Small Madagascar hedgehog)   73 72
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   81 79
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   67 66
Macropus_eugenii_69_1.0   (Tammar wallaby)   54 54
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   61 61
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   53 52
Ornithorhynchus_anatinus_69_5   (Platypus)   131 129
Petromyzon_marinus_69_7.0   (Sea lamprey)   54 54
Meleagris_gallopavo_69_2   (Turkey)   40 40
Gallus_gallus_69_2   (Chicken)   54 53
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   73 72
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   72 70
Anolis_carolinensis_69_2.0   (Green anole)   60 60
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   168 166
Latimeria_chalumnae_69_1   (Coelacanth)   54 51
Gadus_morhua_69_1   (Atlantic cod)   114 112
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   78 75
Takifugu_rubripes_69_4   (Torafugu)   124 119
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   122 121
Oryzias_latipes_69_1   (Japanese medaka)   72 72
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   48 46
Oreochromis_niloticus_69_1.0   (Nile tilapia)   61 59
Danio_rerio_69_9   (Zebrafish)   152 148
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   43 38
Ciona_intestinalis_69   (Vase tunicate)   20 20
Drosophila_melanogaster_69_5   (Fruit fly)   111 111
Caenorhabditis_elegans_69_215   (Roundworm)   87 87
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   24 24
Arabidopsis_thaliana_10   (Thale cress)   84 84

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   265 261
Homo_sapiens__(NCBI_version)   (Human)   141 139
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   120 118
Heliconius_numata__(Incomplete) 19 19
Loa_loa_v3.3_(Request)   (Eye worm)   39 39
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   33 33
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   33 33
Moniliophthora_perniciosa_FA553__(Genome_survey) 20 19
Encephalitozoon_intestinalis__(endoparasite) 15 15
Encephalitozoon_cuniculi_(endoparasite) 15 15
Pinus_sylvestris__(Incomplete)   (Scots pine)   2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   30 30
Lotus_japonicus__(Early_assembly) 99 99
Malus_x_domestica_(Duplicate)   (Apple)   191 190
Ricinus_communis__(Early_assembly)   (Castor bean)   67 67
Nicotiana_benthamiana_0.4.4_(Early_draft) 167 159
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   131 129
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   131 129
Phoenix_dactylifera__(Early_draft)   (Date palm)   22 21
Guillardia_theta_(nucleomorph) 5 5
NCBI_plasmid_sequences_(Plasmids) 16 16
NCBI_viral_sequences_(Viral) 31 21
TargetDB__(Targets) 145 145
Core_Eukaryotic_Genes_458_(CEGMA) 6 6
Protozoadb_2010_08_(Protozoadb) 748 748
Protein_Data_Bank_(all_PDB_sequenc) 1903 1892
UniProt__viral_sequences_(Viral) 13 10
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3262 3252
PDB_chains_(SCOP_1.75)_(PDB) 82 81
STRING_v9.0.5_(STRING) 7047 6927
NCBI_2017_08_genome 57299 55181
Uniprot_2018_03_genome 87784 86141

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