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Domain combinations for Apolipoprotein superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Apolipoprotein domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   4 4
Gorilla_gorilla_76_3.1   (Western gorilla)   3 2
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Papio_anubis_76   (Olive baboon)   2 1
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   2 1
Rattus_norvegicus_76_5.0   (Norway rat)   2 2
Mus_musculus_76_38   (House mouse)   7 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   2 1
Cavia_porcellus_76_3   (Domestic guinea pig)   3 3
Ochotona_princeps_76   (American pika)   1 1
Sus_scrofa_76_10.2   (Pig)   1 1
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   2 1
Canis_familiaris_76_3.1   (Dog)   3 2
Felis_catus_76_6.2   (Domestic cat)   3 2
Equus_caballus_76_2   (Horse)   1 1
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   2 2
Loxodonta_africana_76_3   (African savanna elephant)   4 2
Echinops_telfairi_76   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1 1
Gallus_gallus_76_4   (Chicken)   1 1
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   2 2
Takifugu_rubripes_76_4   (Torafugu)   2 2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   1 1
Oryzias_latipes_76_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1 1
Poecilia_formosa_76   (Amazon molly)   1 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Danio_rerio_76_9   (Zebrafish)   5 5
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   1 1
Capitella_sp._I_ 1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Strigamia_maritima_22 1 1
Meloidogyne_hapla_ 1 1
Amphimedon_queenslandica 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Ustilago_maydis_ 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Schizophyllum_commune_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_dahliae_VdLs.17_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Candida_glabrata_CBS138 1 1
Zygosaccharomyces_rouxii_ 1 1
Selaginella_moellendorffii_ 2 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Linum_usitatissimum_v200   (Flax)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Triticum_aestivum_22   (Bread wheat)   1 1
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_vulgaris_ 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Bigelowiella_natans_CCMP2755_22 2 2
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 1 1
Paramecium_tetraurelia_ 1 1
Tetrahymena_thermophila_SB210_1_ 1 1
Toxoplasma_gondii_ME49 1 1
Theileria_annulata 1 1
Plasmodium_chabaudi_ 3 2
Trichomonas_vaginalis_ 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechococcus_elongatus_PCC_7942 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 1 1
Halothece_sp._PCC_7418 1 1
Nostoc_punctiforme_PCC_73102 1 1
Frankia_sp._EAN1pec 1 1
Nocardioides_sp._JS614 1 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1 1
Micrococcus_luteus_NCTC_2665 1 1
Sphaerobacter_thermophilus_DSM_20745 1 1
Chloroflexus_sp._MS-G 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Oceanithermus_profundus_DSM_14977 1 1
Thermincola_potens_JR 1 1
Pelotomaculum_thermopropionicum_SI 1 1
Acetobacterium_woodii_DSM_1030 1 1
Clostridium_sticklandii_DSM_519 1 1
[Ruminococcus]_torques 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 1 1
Mahella_australiensis_50-1_BON 3 3
Thermosediminibacter_oceani_DSM_16646 1 1
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Moorella_thermoacetica_ATCC_39073 2 2
Tetragenococcus_halophilus_NBRC_12172 1 1
Enterococcus_hirae_ATCC_9790 1 1
Weissella_koreensis_KACC_15510 1 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_gasseri_ATCC_33323 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pseudopneumoniae_IS7493 1 1
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Streptococcus_mitis_B6 1 1
Streptococcus_pneumoniae_P1031 1 1
Streptococcus_sanguinis_SK36 1 1
Streptococcus_oralis_Uo5 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Geobacillus_sp._GHH01 1 1
Geobacillus_sp._WCH70 1 1
Bacillus_pumilus_SAFR-032 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Rhodothermus_marinus_DSM_4252 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Simkania_negevensis_Z 1 1
Phycisphaera_mikurensis_NBRC_102666 1 1
Turneriella_parva_DSM_21527 1 1
Borrelia_afzelii_PKo 1 1
Borrelia_hermsii_DAH 4 3
Spirochaeta_africana_DSM_8902 1 1
Thermodesulfatator_indicus_DSM_15286 2 2
Desulfurispirillum_indicum_S5 2 2
Candidatus_Saccharimonas_aalborgensis 1 1
Desulfobacca_acetoxidans_DSM_11109 3 3
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Geobacter_uraniireducens_Rf4 1 1
Pelobacter_propionicus_DSM_2379 1 1
Laribacter_hongkongensis_HLHK9 1 1
Chromobacterium_violaceum_ATCC_12472 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Dinoroseobacter_shibae_DFL_12 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Rhodospirillum_photometricum_DSM_122 2 2
Rhodospirillum_rubrum_F11 1 1
Rickettsia_philipii_str._364D 1 1
Rickettsia_heilongjiangensis_054 1 1
Rickettsia_felis_URRWXCal2 1 1
Rickettsia_slovaca_13-B 1 1
Rickettsia_parkeri_str._Portsmouth 1 1
Rickettsia_japonica_YH 1 1
Rickettsia_africae_ESF-5 1 1
Candidatus_Rickettsia_amblyommii_str._GAT-30V 1 1
Rickettsia_australis_str._Cutlack 1 1
Rickettsia_akari_str._Hartford 1 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1 1
Rickettsia_conorii_str._Malish_7 1 1
Haemophilus_somnus_129PT 1 1
Shewanella_violacea_DSS12 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Legionella_longbeachae_NSW150 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Pseudomonas_sp._VLB120 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Pyrolobus_fumarii_1A 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Thermosphaera_aggregans_DSM_11486 1 1
Acidianus_hospitalis_W1 1 1
Pyrobaculum_oguniense_TE7 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Methanospirillum_hungatei_JF-1 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   1 1
Dactylococcopsis_salina_PCC_8305 1 1
Synechococcus_elongatus_PCC_6301 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Stanieria_cyanosphaera_PCC_7437 1 1
Streptomyces_collinus_Tu_365 1 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1 1
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_kluyveri_NBRC_12016 1 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Streptococcus_anginosus_C238 1 1
Streptococcus_anginosus_C1051 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_SPN994039 1 1
Streptococcus_pneumoniae_SPN994038 1 1
Streptococcus_pneumoniae_SPN034183 1 1
Streptococcus_pneumoniae_SPN034156 1 1
Streptococcus_pneumoniae_INV104 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_OXC141 1 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_ATCC_700669 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_G54 1 1
Streptococcus_pneumoniae_JJA 1 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_670-6B 1 1
Streptococcus_pneumoniae_R6 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Geobacillus_sp._C56-T3 1 1
Geobacillus_sp._Y4.1MC1 1 1
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1 1
Bacillus_amyloliquefaciens_Y2 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Borrelia_afzelii_PKo 1 1
Borrelia_burgdorferi_JD1 1 1
Borrelia_burgdorferi_N40 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Burkholderia_cenocepacia_J2315 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1 1
Rickettsia_slovaca_str._D-CWPP 1 1
Rickettsia_rickettsii_str._Arizona 1 1
Rickettsia_rickettsii_str._Brazil 1 1
Rickettsia_rickettsii_str._Hauke 1 1
Rickettsia_rickettsii_str._Colombia 1 1
Rickettsia_rickettsii__str._Hlp#2 1 1
Rickettsia_rickettsii_str._Hino 1 1
Rickettsia_rickettsii_str._Iowa 1 1
Candidatus_Liberibacter_solanacearum_CLso-ZC1 1 1
Candidatus_Liberibacter_americanus_str._Sao_Paulo 1 1
Candidatus_Liberibacter_asiaticus_str._gxpsy 1 1
Haemophilus_somnus_2336 1 1
Pasteurella_multocida_subsp._multocida_str._Pm70 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS155 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Erwinia_pyrifoliae_DSM_12163 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Sulfolobus_islandicus_REY15A 1 1
Natronomonas_moolapensis_8.8.11 1 1

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Longest transcript per gene
Genome     Number   Proteins
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Mus_musculus_69_38   (House mouse)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   2 1
Cavia_porcellus_69_3   (Domestic guinea pig)   2 2
Ochotona_princeps_69   (American pika)   1 1
Sus_scrofa_69_10.2   (Pig)   1 1
Bos_taurus_69_3.1   (Cattle)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   2 1
Canis_familiaris_69_3.1   (Dog)   2 1
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   1 1
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   2 2
Loxodonta_africana_69_3   (African savanna elephant)   2 1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   1 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   2 2
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1 1
Gallus_gallus_69_2   (Chicken)   1 1
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Danio_rerio_69_9   (Zebrafish)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4 4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 1 1
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
NCBI_plasmid_sequences_(Plasmids) 28 27
UniProt__viral_sequences_(Viral) 3 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 42 42
STRING_v9.0.5_(STRING) 90 89
Uniprot_2018_03_genome 1744 1725
NCBI_2017_08_genome 10290 10277
NCBI_viral_sequences_(Viral) 6 6
TargetDB__(Targets) 2 2
PDB_chains_(SCOP_1.75)_(PDB) 11 11
Protozoadb_2010_08_(Protozoadb) 11 11
Protein_Data_Bank_(all_PDB_sequenc) 14 14

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