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Domain combinations for alpha-catenin/vinculin-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a alpha-catenin/vinculin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   117 52
Pan_troglodytes_76_2.1.4   (Chimpanzee)   26 6
Gorilla_gorilla_76_3.1   (Western gorilla)   37 10
Pongo_abelii_76_2   (Sumatran orangutan)   31 7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   34 10
Papio_anubis_76   (Olive baboon)   39 10
Macaca_mulatta_76_1   (Rhesus monkey)   67 20
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   49 14
Otolemur_garnettii_76_3   (Small-eared galago)   37 10
Microcebus_murinus_76_1   (Gray mouse lemur)   29 7
Rattus_norvegicus_76_5.0   (Norway rat)   45 11
Mus_musculus_76_38   (House mouse)   59 16
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   31 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   19 7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   33 10
Cavia_porcellus_76_3   (Domestic guinea pig)   32 9
Oryctolagus_cuniculus_76_2   (Rabbit)   28 8
Ochotona_princeps_76   (American pika)   31 7
Tupaia_belangeri_76   (Northern tree shrew)   29 7
Sus_scrofa_76_10.2   (Pig)   33 12
Bos_taurus_76_3.1   (Cattle)   33 8
Ovis_aries_76_3.1   (Sheep)   38 12
Vicugna_pacos_76_1   (Alpaca)   24 6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   30 7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   32 10
Ailuropoda_melanoleuca_76_1   (Giant panda)   36 12
Canis_familiaris_76_3.1   (Dog)   46 14
Felis_catus_76_6.2   (Domestic cat)   36 11
Equus_caballus_76_2   (Horse)   61 15
Myotis_lucifugus_76_2.0   (Little brown bat)   33 11
Pteropus_vampyrus_76_1   (Large flying fox)   31 7
Sorex_araneus_76_1   (European shrew)   26 7
Erinaceus_europaeus_76   (Western European hedgehog)   28 7
Procavia_capensis_76_1   (Cape rock hyrax)   31 7
Loxodonta_africana_76_3   (African savanna elephant)   53 13
Echinops_telfairi_76   (Small Madagascar hedgehog)   29 7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   47 14
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   30 7
Macropus_eugenii_76_1.0   (Tammar wallaby)   33 7
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   29 10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   39 11
Ornithorhynchus_anatinus_76_5   (Platypus)   40 16
Saccoglossus_kowalevskii_v3.0 190 36
Petromyzon_marinus_76_7.0   (Sea lamprey)   16 6
Meleagris_gallopavo_76_2   (Turkey)   41 13
Gallus_gallus_76_4   (Chicken)   39 11
Anas_platyrhynchos_76_1.0   (Mallard)   47 16
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   36 10
Ficedula_albicollis_76_1.0   (Collared flycatcher)   38 9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   40 12
Anolis_carolinensis_76_2.0   (Green anole)   31 9
Xenopus_laevis_   (African clawed frog)   49 15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   37 10
Latimeria_chalumnae_76_1   (Coelacanth)   39 15
Lepisosteus_oculatus_76   (Spotted gar)   45 14
Gadus_morhua_76_1   (Atlantic cod)   41 9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   51 14
Takifugu_rubripes_76_4   (Torafugu)   103 23
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   61 12
Oryzias_latipes_76_1   (Japanese medaka)   58 14
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   43 9
Poecilia_formosa_76   (Amazon molly)   49 12
Oreochromis_niloticus_76_1.0   (Nile tilapia)   59 12
Astyanax_mexicanus_76   (Mexican tetra)   36 12
Danio_rerio_76_9   (Zebrafish)   68 18
Oikopleura_dioica 23 6
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   32 9
Ciona_intestinalis_76   (Vase tunicate)   22 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   32 15
Adineta_vaga 54 14
Octopus_bimaculoides_280 47 18
Crassostrea_gigas_22   (Pacific oyster)   22 8
Lottia_gigantea_   (Owl limpet)   18 4
Helobdella_robusta_ 16 4
Capitella_sp._I_ 22 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   19 8
Heliconius_melpomene_   (Postman butterfly)   15 5
Bombyx_mori_   (Domestic silkworm)   20 13
Nasonia_vitripennis_   (Jewel wasp)   9 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   28 9
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   19 5
Linepithema_humile_v1.1   (Argentine ant)   19 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   21 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   19 5
Atta_cephalotes_v1.1 20 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   18 4
Lucilia_cuprina   (Australian sheep blowfly)   18 4
Drosophila_grimshawi_1.3 17 4
Drosophila_willistoni_1.3 17 4
Drosophila_pseudoobscura_2.13 10 3
Drosophila_persimilis_1.3 13 4
Drosophila_suzukii 13 3
Drosophila_yakuba_1.3 18 6
Drosophila_simulans_1.3 4 3
Drosophila_sechellia_1.3 16 4
Drosophila_melanogaster_76_5   (Fruit fly)   42 11
Drosophila_erecta_1.3 17 4
Drosophila_ananassae_1.3 17 4
Drosophila_virilis_1.2 16 4
Drosophila_mojavensis_1.3 17 4
Megaselia_scalaris_22 13 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   20 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   17 5
Anopheles_darlingi_22   (American malaria mosquito)   16 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   17 4
Tribolium_castaneum_3.0   (Red flour beetle)   22 5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   19 5
Acyrthosiphon_pisum_   (Pea aphid)   15 5
Rhodnius_prolixus_22 18 4
Daphnia_pulex_   (Common water flea)   27 10
Strigamia_maritima_22 26 6
Sarcoptes_scabiei 17 6
Tetranychus_urticae_   (Two-spotted spider mite)   23 6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   16 4
Pristionchus_pacificus_ 13 7
Meloidogyne_incognita_   (Southern root-knot nematode)   56 20
Meloidogyne_hapla_ 9 3
Onchocerca_volvulus_22 16 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   21 7
Caenorhabditis_japonica_ 16 4
Caenorhabditis_brenneri_ 30 10
Caenorhabditis_remanei_ 15 5
Caenorhabditis_elegans_76_235   (Roundworm)   54 15
Caenorhabditis_briggsae_2 24 5
Trichinella_spiralis_22 18 6
Hymenolepis_microstoma_ 9 3
Echinococcus_multilocularis_ 8 3
Echinococcus_granulosus_ 8 3
Taenia_solium_   (Pork tapeworm)   9 4
Schistosoma_mansoni_ 12 4
Mnemiopsis_leidyi   (Sea walnut)   17 5
Thelohanellus_kitauei 3 2
Acropora_digitifera_v1.0 24 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   16 6
Hydra_vulgaris 12 4
Amphimedon_queenslandica 19 4
Trichoplax_adhaerens_ 15 4
Proterospongia_sp._ATCC_50818_ 9 2
Monosiga_brevicollis_ 9 2
Sphaeroforma_arctica_JP610_ 5 2
Capsaspora_owczarzaki_ATCC_30864_ 12 5
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 3 2
Spizellomyces_punctatus_DAOM_BR117_ 5 2
Dictyostelium_discoideum 13 3
Dictyostelium_purpureum_ 18 6
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Thecamonas_trahens_ATCC_50062_ 11 6

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   48 11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   17 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   17 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   16 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   36 10
Batrachochytrium_dendrobatidis_JEL423_ 3 2
Batrachochytrium_dendrobatidis_JAM81_ 3 2
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   31 7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   26 6
Gorilla_gorilla_69_3.1   (Western gorilla)   24 7
Pongo_abelii_69_2   (Sumatran orangutan)   31 7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   29 7
Macaca_mulatta_69_1   (Rhesus monkey)   33 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   29 8
Otolemur_garnettii_69_3   (Small-eared galago)   31 8
Microcebus_murinus_69_1   (Gray mouse lemur)   29 7
Rattus_norvegicus_69_3.4   (Norway rat)   29 9
Mus_musculus_69_38   (House mouse)   32 8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   31 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   17 6
Cavia_porcellus_69_3   (Domestic guinea pig)   32 9
Oryctolagus_cuniculus_69_2   (Rabbit)   25 7
Ochotona_princeps_69   (American pika)   31 7
Tupaia_belangeri_69   (Northern tree shrew)   29 7
Sus_scrofa_69_10.2   (Pig)   27 11
Bos_taurus_69_3.1   (Cattle)   33 8
Vicugna_pacos_69_1   (Alpaca)   24 6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   30 7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   32 10
Ailuropoda_melanoleuca_69_1   (Giant panda)   32 11
Canis_familiaris_69_3.1   (Dog)   33 11
Felis_catus_69   (Domestic cat)   30 6
Equus_caballus_69_2   (Horse)   29 9
Myotis_lucifugus_69_2.0   (Little brown bat)   30 10
Pteropus_vampyrus_69_1   (Large flying fox)   31 7
Sorex_araneus_69_1   (European shrew)   26 7
Erinaceus_europaeus_69   (Western European hedgehog)   28 7
Procavia_capensis_69_1   (Cape rock hyrax)   31 7
Loxodonta_africana_69_3   (African savanna elephant)   31 8
Echinops_telfairi_69   (Small Madagascar hedgehog)   29 7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   32 7
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   30 7
Macropus_eugenii_69_1.0   (Tammar wallaby)   33 7
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   29 10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   39 11
Ornithorhynchus_anatinus_69_5   (Platypus)   34 15
Petromyzon_marinus_69_7.0   (Sea lamprey)   16 6
Meleagris_gallopavo_69_2   (Turkey)   33 11
Gallus_gallus_69_2   (Chicken)   32 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   36 10
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   30 10
Anolis_carolinensis_69_2.0   (Green anole)   32 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26 8
Latimeria_chalumnae_69_1   (Coelacanth)   31 11
Gadus_morhua_69_1   (Atlantic cod)   41 9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   40 11
Takifugu_rubripes_69_4   (Torafugu)   46 10
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   41 8
Oryzias_latipes_69_1   (Japanese medaka)   41 10
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   43 9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   42 9
Danio_rerio_69_9   (Zebrafish)   43 9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   12 4
Ciona_intestinalis_69   (Vase tunicate)   18 4
Drosophila_melanogaster_69_5   (Fruit fly)   17 4
Caenorhabditis_elegans_69_215   (Roundworm)   16 4

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   136 56
Homo_sapiens__(NCBI_version)   (Human)   45 10
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   32 8
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   16 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   23 11
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   16 5
Uniprot_2018_03_genome 14639 4324
Protozoadb_2010_08_(Protozoadb) 4 4
NCBI_2017_08_genome 25755 6282
PDB_chains_(SCOP_1.75)_(PDB) 19 11
TargetDB__(Targets) 16 5
Protein_Data_Bank_(all_PDB_sequenc) 164 109
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 345 345
STRING_v9.0.5_(STRING) 1300 352

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