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Domain combinations for Retrovirus capsid dimerization domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Retrovirus capsid dimerization domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   224 224
Pan_troglodytes_76_2.1.4   (Chimpanzee)   56 56
Gorilla_gorilla_76_3.1   (Western gorilla)   73 73
Pongo_abelii_76_2   (Sumatran orangutan)   57 57
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   58 58
Papio_anubis_76   (Olive baboon)   53 53
Macaca_mulatta_76_1   (Rhesus monkey)   90 90
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   94 94
Otolemur_garnettii_76_3   (Small-eared galago)   47 47
Microcebus_murinus_76_1   (Gray mouse lemur)   40 40
Rattus_norvegicus_76_5.0   (Norway rat)   42 42
Mus_musculus_76_38   (House mouse)   104 104
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   30 30
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   46 46
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   31 31
Cavia_porcellus_76_3   (Domestic guinea pig)   61 61
Oryctolagus_cuniculus_76_2   (Rabbit)   46 46
Ochotona_princeps_76   (American pika)   37 37
Tupaia_belangeri_76   (Northern tree shrew)   27 27
Sus_scrofa_76_10.2   (Pig)   49 49
Bos_taurus_76_3.1   (Cattle)   64 64
Ovis_aries_76_3.1   (Sheep)   82 81
Vicugna_pacos_76_1   (Alpaca)   24 24
Tursiops_truncatus_76_1   (Bottlenose dolphin)   46 46
Mustela_putorius_furo_76_1.0   (Domestic ferret)   51 51
Ailuropoda_melanoleuca_76_1   (Giant panda)   65 65
Canis_familiaris_76_3.1   (Dog)   61 61
Felis_catus_76_6.2   (Domestic cat)   62 62
Equus_caballus_76_2   (Horse)   58 58
Myotis_lucifugus_76_2.0   (Little brown bat)   50 49
Pteropus_vampyrus_76_1   (Large flying fox)   41 41
Sorex_araneus_76_1   (European shrew)   28 28
Erinaceus_europaeus_76   (Western European hedgehog)   20 20
Procavia_capensis_76_1   (Cape rock hyrax)   38 38
Loxodonta_africana_76_3   (African savanna elephant)   77 77
Echinops_telfairi_76   (Small Madagascar hedgehog)   35 35
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   91 91
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   31 31
Macropus_eugenii_76_1.0   (Tammar wallaby)   21 21
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   93 93
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   44 44
Ornithorhynchus_anatinus_76_5   (Platypus)   31 31
Saccoglossus_kowalevskii_v3.0 7 7
Gallus_gallus_76_4   (Chicken)   4 4
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16 16
Anolis_carolinensis_76_2.0   (Green anole)   156 156
Xenopus_laevis_   (African clawed frog)   7 7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   19 16
Latimeria_chalumnae_76_1   (Coelacanth)   39 39
Lepisosteus_oculatus_76   (Spotted gar)   1 1
Gadus_morhua_76_1   (Atlantic cod)   1 1
Takifugu_rubripes_76_4   (Torafugu)   3 3
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   2 2
Astyanax_mexicanus_76   (Mexican tetra)   5 5
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   27 27
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   2 2
Helobdella_robusta_ 3 3
Rhodnius_prolixus_22 2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4 4
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Acropora_digitifera_v1.0 4 4
Amphimedon_queenslandica 36 36
Amborella_trichopoda_22 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   18 15

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   56 56
Pan_troglodytes_69_2.1.4   (Chimpanzee)   53 53
Gorilla_gorilla_69_3.1   (Western gorilla)   59 59
Pongo_abelii_69_2   (Sumatran orangutan)   51 51
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   54 54
Macaca_mulatta_69_1   (Rhesus monkey)   53 53
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   49 49
Otolemur_garnettii_69_3   (Small-eared galago)   46 46
Microcebus_murinus_69_1   (Gray mouse lemur)   40 40
Rattus_norvegicus_69_3.4   (Norway rat)   40 40
Mus_musculus_69_38   (House mouse)   43 43
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   30 30
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   42 42
Cavia_porcellus_69_3   (Domestic guinea pig)   54 54
Oryctolagus_cuniculus_69_2   (Rabbit)   39 39
Ochotona_princeps_69   (American pika)   37 37
Tupaia_belangeri_69   (Northern tree shrew)   27 27
Sus_scrofa_69_10.2   (Pig)   44 44
Bos_taurus_69_3.1   (Cattle)   55 55
Vicugna_pacos_69_1   (Alpaca)   24 24
Tursiops_truncatus_69_1   (Bottlenose dolphin)   46 46
Mustela_putorius_furo_69_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_69_1   (Giant panda)   55 55
Canis_familiaris_69_3.1   (Dog)   51 51
Felis_catus_69   (Domestic cat)   39 39
Equus_caballus_69_2   (Horse)   52 52
Myotis_lucifugus_69_2.0   (Little brown bat)   47 46
Pteropus_vampyrus_69_1   (Large flying fox)   41 41
Sorex_araneus_69_1   (European shrew)   28 28
Erinaceus_europaeus_69   (Western European hedgehog)   20 20
Procavia_capensis_69_1   (Cape rock hyrax)   38 38
Loxodonta_africana_69_3   (African savanna elephant)   62 62
Echinops_telfairi_69   (Small Madagascar hedgehog)   35 35
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   26 26
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   31 31
Macropus_eugenii_69_1.0   (Tammar wallaby)   21 21
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   79 79
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   43 43
Ornithorhynchus_anatinus_69_5   (Platypus)   28 28
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   16 16
Anolis_carolinensis_69_2.0   (Green anole)   114 114
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   19 16
Latimeria_chalumnae_69_1   (Coelacanth)   39 39
Gadus_morhua_69_1   (Atlantic cod)   1 1
Takifugu_rubripes_69_4   (Torafugu)   3 3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   8 8
Oryzias_latipes_69_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   2 2
Ciona_intestinalis_69   (Vase tunicate)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   220 220
Homo_sapiens__(NCBI_version)   (Human)   83 83
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   44 44
Protozoadb_2010_08_(Protozoadb) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 16 16
STRING_v9.0.5_(STRING) 793 793
Protein_Data_Bank_(all_PDB_sequenc) 3117 3117
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5731 5731
NCBI_2017_08_genome 14552 14420
UniProt__viral_sequences_(Viral) 25200 25200
Uniprot_2018_03_genome 66936 66907
NCBI_viral_sequences_(Viral) 42 42
TargetDB__(Targets) 15 15

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