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Domain combinations for Bromodomain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Bromodomain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   352 237
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 36
Gorilla_gorilla_76_3.1   (Western gorilla)   73 56
Pongo_abelii_76_2   (Sumatran orangutan)   62 42
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   54 40
Papio_anubis_76   (Olive baboon)   61 42
Macaca_mulatta_76_1   (Rhesus monkey)   123 86
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   151 117
Otolemur_garnettii_76_3   (Small-eared galago)   54 40
Microcebus_murinus_76_1   (Gray mouse lemur)   47 36
Rattus_norvegicus_76_5.0   (Norway rat)   63 39
Mus_musculus_76_38   (House mouse)   221 131
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   44 32
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   49 38
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   60 45
Cavia_porcellus_76_3   (Domestic guinea pig)   50 38
Oryctolagus_cuniculus_76_2   (Rabbit)   56 40
Ochotona_princeps_76   (American pika)   44 32
Tupaia_belangeri_76   (Northern tree shrew)   37 28
Sus_scrofa_76_10.2   (Pig)   47 41
Bos_taurus_76_3.1   (Cattle)   61 45
Ovis_aries_76_3.1   (Sheep)   71 51
Vicugna_pacos_76_1   (Alpaca)   39 29
Tursiops_truncatus_76_1   (Bottlenose dolphin)   50 36
Mustela_putorius_furo_76_1.0   (Domestic ferret)   53 40
Ailuropoda_melanoleuca_76_1   (Giant panda)   61 46
Canis_familiaris_76_3.1   (Dog)   107 76
Felis_catus_76_6.2   (Domestic cat)   57 43
Equus_caballus_76_2   (Horse)   76 54
Myotis_lucifugus_76_2.0   (Little brown bat)   60 45
Pteropus_vampyrus_76_1   (Large flying fox)   51 38
Sorex_araneus_76_1   (European shrew)   40 28
Erinaceus_europaeus_76   (Western European hedgehog)   40 30
Procavia_capensis_76_1   (Cape rock hyrax)   45 33
Loxodonta_africana_76_3   (African savanna elephant)   93 68
Echinops_telfairi_76   (Small Madagascar hedgehog)   43 33
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   68 53
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   35 26
Macropus_eugenii_76_1.0   (Tammar wallaby)   42 32
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   69 52
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   50 36
Ornithorhynchus_anatinus_76_5   (Platypus)   47 38
Saccoglossus_kowalevskii_v3.0 153 79
Petromyzon_marinus_76_7.0   (Sea lamprey)   35 21
Meleagris_gallopavo_76_2   (Turkey)   63 44
Gallus_gallus_76_4   (Chicken)   54 35
Anas_platyrhynchos_76_1.0   (Mallard)   46 32
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   49 36
Ficedula_albicollis_76_1.0   (Collared flycatcher)   46 36
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   50 36
Anolis_carolinensis_76_2.0   (Green anole)   49 35
Xenopus_laevis_   (African clawed frog)   76 54
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   71 49
Latimeria_chalumnae_76_1   (Coelacanth)   57 47
Lepisosteus_oculatus_76   (Spotted gar)   71 55
Gadus_morhua_76_1   (Atlantic cod)   66 51
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   85 56
Takifugu_rubripes_76_4   (Torafugu)   212 160
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   82 63
Oryzias_latipes_76_1   (Japanese medaka)   73 54
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   68 50
Poecilia_formosa_76   (Amazon molly)   77 56
Oreochromis_niloticus_76_1.0   (Nile tilapia)   108 76
Astyanax_mexicanus_76   (Mexican tetra)   71 51
Danio_rerio_76_9   (Zebrafish)   128 88
Oikopleura_dioica 20 14
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   59 43
Ciona_intestinalis_76   (Vase tunicate)   26 21
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   46 34
Adineta_vaga 85 63
Octopus_bimaculoides_280 52 42
Crassostrea_gigas_22   (Pacific oyster)   28 20
Lottia_gigantea_   (Owl limpet)   29 22
Helobdella_robusta_ 41 32
Capitella_sp._I_ 33 25
Danaus_plexippus_OGS1.0   (Monarch butterfly)   26 20
Heliconius_melpomene_   (Postman butterfly)   21 14
Bombyx_mori_   (Domestic silkworm)   25 18
Nasonia_vitripennis_   (Jewel wasp)   19 17
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   44 39
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   29 21
Linepithema_humile_v1.1   (Argentine ant)   28 20
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   31 23
Solenopsis_invicta_v.2.2.3   (Red fire ant)   27 19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   29 21
Atta_cephalotes_v1.1 28 20
Camponotus_floridanus_v3.3   (Florida carpenter ant)   28 20
Lucilia_cuprina   (Australian sheep blowfly)   25 17
Drosophila_grimshawi_1.3 37 28
Drosophila_willistoni_1.3 29 20
Drosophila_pseudoobscura_2.13 37 26
Drosophila_persimilis_1.3 29 24
Drosophila_suzukii 40 22
Drosophila_yakuba_1.3 28 19
Drosophila_simulans_1.3 24 16
Drosophila_sechellia_1.3 28 19
Drosophila_melanogaster_76_5   (Fruit fly)   76 55
Drosophila_erecta_1.3 29 20
Drosophila_ananassae_1.3 29 21
Drosophila_virilis_1.2 29 20
Drosophila_mojavensis_1.3 33 24
Megaselia_scalaris_22 10 8
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   29 21
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   25 17
Anopheles_darlingi_22   (American malaria mosquito)   21 17
Anopheles_gambiae_49_3j   (African malaria mosquito)   25 17
Tribolium_castaneum_3.0   (Red flour beetle)   27 19
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   47 38
Acyrthosiphon_pisum_   (Pea aphid)   24 17
Rhodnius_prolixus_22 22 16
Daphnia_pulex_   (Common water flea)   41 32
Strigamia_maritima_22 26 19
Sarcoptes_scabiei 29 19
Tetranychus_urticae_   (Two-spotted spider mite)   25 20
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   25 17
Pristionchus_pacificus_ 19 15
Meloidogyne_incognita_   (Southern root-knot nematode)   19 14
Meloidogyne_hapla_ 10 9
Onchocerca_volvulus_22 23 16
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   64 38
Caenorhabditis_japonica_ 23 13
Caenorhabditis_brenneri_ 37 23
Caenorhabditis_remanei_ 29 20
Caenorhabditis_elegans_76_235   (Roundworm)   46 34
Caenorhabditis_briggsae_2 25 16
Trichinella_spiralis_22 28 17
Hymenolepis_microstoma_ 32 24
Echinococcus_multilocularis_ 23 16
Echinococcus_granulosus_ 26 19
Taenia_solium_   (Pork tapeworm)   20 17
Schistosoma_mansoni_ 27 21
Mnemiopsis_leidyi   (Sea walnut)   25 19
Thelohanellus_kitauei 9 7
Acropora_digitifera_v1.0 34 23
Nematostella_vectensis_1.0   (Starlet sea anemone)   27 20
Hydra_vulgaris 21 17
Amphimedon_queenslandica 47 37
Trichoplax_adhaerens_ 23 16
Proterospongia_sp._ATCC_50818_ 26 19
Monosiga_brevicollis_ 27 20
Sphaeroforma_arctica_JP610_ 25 20
Capsaspora_owczarzaki_ATCC_30864_ 19 16
Conidiobolus_coronatus_NRRL28638_v1.0 10 9
Mortierella_verticillata_NRRL_6337_ 27 20
Phycomyces_blakesleeanus_ 22 16
Rhizopus_oryzae_RA_99-880_ 28 19
Mucor_circinelloides_ 25 19
Rhizomucor_miehei_CAU432_ 27 15
Malassezia_globosa_CBS_7966_ 30 22
Sporisorium_reilianum_22 16 12
Ustilago_maydis_ 16 12
Mixia_osmundae_IAM_14324_v1.0 15 10
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 13 9
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 14 11
Melampsora_laricis-populina_ 13 10
Rhodotorula_graminis_WP1_v1.0 14 9
Sporobolomyces_roseus_IAM_13481_ 13 8
Microbotryum_violaceum_22 14 9
Wallemia_sebi_v1.0 14 10
Sphaerobolus_stellatus_v1.0 15 10
Piloderma_croceum_F_1598_v1.0 16 11
Serpula_lacrymans_var._lacrymans_S7.9_ 13 9
Coniophora_puteana 15 11
Hydnomerulius_pinastri_v2.0 16 11
Paxillus_rubicundulus_Ve08.2h10_v1.0 16 11
Pisolithus_microcarpus_441_v1.0 17 12
Pisolithus_tinctorius_Marx_270_v1.0 20 14
Scleroderma_citrinum_Foug_A_v1.0 17 13
Coprinopsis_cinerea_okayama7_130_v3 15 11
Pleurotus_ostreatus_   (Oyster mushroom)   16 11
Amanita_thiersii_Skay4041_v1.0 16 11
Amanita_muscaria_Koide_v1.0   (Fly agaric)   16 11
Galerina_marginata_v1.0 16 11
Hebeloma_cylindrosporum_h7_v2.0 16 11
Laccaria_bicolor_S238N-H82_ 16 11
Agaricus_bisporus_var._bisporus_ 15 10
Schizophyllum_commune_ 17 12
Stereum_hirsutum_FP-91666_SS1__v1.0 16 11
Heterobasidion_annosum_ 22 17
Gloeophyllum_trabeumv1.0 16 11
Punctularia_strigosozonata_v1.0 12 8
Sebacina_vermifera_MAFF_305830_v1.0 17 11
Fomitiporia_mediterranea_v1.0 18 13
Tulasnella_calospora_AL13/4D_v1.0 16 10
Postia_placenta_ 21 17
Wolfiporia_cocos_MD-104_SS10__v1.0 16 11
Fomitopsis_pinicolav1.0 16 12
Fomitopsis_pinicola_FP-58527_SS1_v3.0 16 12
Phanerochaete_chrysosporium_RP-78_2.1 15 11
Dichomitus_squalens 13 9
Trametes_versicolor_v1.0 16 11
Tremella_mesenterica_   (Witches' butter)   15 11
Daldinia_eschscholzii_EC12_v1.0 11 8
Apiospora_montagnei_NRRL_25634_v1.0 13 10
Magnaporthe_poae_ATCC_64411_22 15 11
Magnaporthe_grisea_70-15_ 11 8
Podospora_anserina_ 12 9
Sporotrichum_thermophile_ATCC_42464_ 11 8
Thielavia_terrestris_NRRL_8126_ 12 9
Chaetomium_globosum_CBS_148.51_ 12 9
Neurospora_tetrasperma_ 11 8
Neurospora_discreta_FGSC_8579_ 11 8
Neurospora_crassa_OR74A_ 11 8
Cryphonectria_parasitica_   (Chestnut blight fungus)   12 9
Verticillium_albo-atrum_VaMs.102_ 8 7
Verticillium_dahliae_VdLs.17_ 11 8
Acremonium_alcalophilumv_1.0 12 9
Glomerella_graminicola_22 11 8
Fusarium_graminearum_ 11 8
Nectria_haematococca_mpVI_ 12 9
Fusarium_oxysporum_f._sp._lycopersici_4286_ 13 10
Fusarium_verticillioides_7600_ 11 8
Trichoderma_asperellum_CBS_433.97_v1.0 10 7
Trichoderma_atroviride_ 11 8
Trichoderma_citrinoviride_v1.0 13 10
Trichoderma_reesei_1.2 11 8
Trichoderma_virens_Gv29-8_ 11 8
Trichoderma_longibrachiatum_ATCC_18648_v1.0 9 7
Trichoderma_harzianum_CBS_226.95_v1.0 11 8
Amorphotheca_resinae_v1.0   (Creosote fungus)   11 8
Botrytis_cinerea_B05.10_ 11 8
Sclerotinia_sclerotiorum_ 11 8
Blumeria_graminis_22 10 7
Didymella_exigua_CBS_183.55_v1.0 11 8
Leptosphaeria_maculans_22 11 8
Setosphaeria_turcica_v1.0 11 8
Cochliobolus_miyabeanus_ATCC_44560_v1.0 11 8
Cochliobolus_victoriae_FI3_v1.0 11 8
Cochliobolus_carbonum_26-R-13_v1.0 11 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9 7
Alternaria_brassicicola_ 11 8
Cochliobolus_lunatus_m118_v2.0 11 8
Pyrenophora_teres_f._teres_22 14 10
Pyrenophora_tritici-repentis_ 12 9
Stagonospora_nodorum_ 11 9
Mycosphaerella_graminicola_IPO323_ 9 6
Zasmidium_cellare_ATCC_36951_v1.0 12 9
Dothistroma_septosporum 11 8
Septoria_musiva_v1.0 11 8
Mycosphaerella_fijiensis_CIRAD86_ 11 8
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 14 11
Paracoccidioides_brasiliensis_Pb18_ 10 7
Coccidioides_posadasii_RMSCC_3488_ 11 8
Coccidioides_immitis_RS_ 11 8
Ajellomyces_dermatitidis_SLH14081_ 12 9
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 12 9
Microsporum_canis_CBS_113480_ 11 8
Trichophyton_equinum_CBS_127.97_ 11 9
Trichophyton_verrucosum_HKI_0517_ 12 9
Arthroderma_benhamiae_CBS_112371_ 12 9
Trichophyton_tonsurans_CBS_112818_ 12 9
Trichophyton_rubrum_CBS_118892_ 12 9
Uncinocarpus_reesii_1704_ 10 7
Aspergillus_zonatus_v1.0 8 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 10 8
Penicillium_chrysogenum_v1.0 10 8
Aspergillus_acidus_v1.0 9 8
Aspergillus_fumigatus_Af293 9 7
Aspergillus_brasiliensis_v1.0 9 7
Aspergillus_nidulans_FGSC_A4_ 9 7
Aspergillus_sydowii_v1.0 10 8
Aspergillus_versicolor_v1.0 10 8
Aspergillus_glaucus 9 7
Aspergillus_carbonarius_ITEM_5010_ 9 7
Neosartorya_fischeri_NRRL_181_ 9 7
Aspergillus_terreus_NIH2624_ 10 8
Aspergillus_tubingensis_v1.0 10 8
Aspergillus_wentii_v1.0 9 7
Aspergillus_oryzae_RIB40_ 7 6
Aspergillus_niger_22 10 8
Aspergillus_niger_ATCC_1015_ 9 7
Aspergillus_flavus_NRRL3357_ 9 7
Aspergillus_clavatus_NRRL_1_ 9 7
Penicillium_marneffei_ATCC_18224_ 11 8
Tuber_melanosporum_Mel28_22 9 8
Tuber_melanosporum_Vittad_   (Perigord truffle)   9 8
Hansenula_polymorpha_v2.0 12 9
Dekkera_bruxellensis_CBS_2499_v2.0 12 9
Pichia_membranifaciensv1.0 13 10
Candida_tanzawaensis_NRRL_Y-17324__v1.0 12 9
Candida_dubliniensis_CD36_ 12 9
Candida_tropicalis_MYA-3404_ 12 10
Candida_parapsilosis_ 11 8
Candida_albicans_SC5314 12 9
Lodderomyces_elongisporus_NRRL_YB-4239_ 11 8
Babjeviella_inositovora_NRRL_Y-12698_v1.0 12 9
Pichia_stipitis_CBS_6054_ 12 9
Candida_guilliermondii_ATCC_6260_ 10 8
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 12 9
Debaromyces_hansenii 12 9
Wickerhamomyces_anomalus 12 9
Pichia_pastoris_GS115_ 12 9
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 9 8
Yarrowia_lipolytica_CLIB122 12 9
Candida_lusitaniae_ATCC_42720_ 12 9
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 12 9
Vanderwaltozyma_polyspora_DSM_70294_ 13 9
Candida_glabrata_CBS138 13 9
Kluyveromyces_thermotolerans_CBS_6340 11 8
Lachancea_kluyveri_ 12 9
Kluyveromyces_waltii 10 7
Ashbya_gossypii_ATCC_10895_ 11 8
Zygosaccharomyces_rouxii_ 11 8
Saccharomyces_mikatae_MIT 16 11
Saccharomyces_paradoxus_MIT 15 10
Saccharomyces_cerevisiae_76   (Baker's yeast)   15 10
Saccharomyces_bayanus_MIT 13 8
Kluyveromyces_lactis 11 8
Schizosaccharomyces_cryophilus_OY26_22 14 10
Schizosaccharomyces_octosporus_yFS286_ 14 10
Schizosaccharomyces_japonicus_yFS275_ 13 9
Schizosaccharomyces_pombe   (Fission yeast)   14 10
Catenaria_anguillulae_PL171_v1.0 19 15
Allomyces_macrogynus_ATCC_38327_ 31 19
Spizellomyces_punctatus_DAOM_BR117_ 24 18
Dictyostelium_discoideum 14 14
Dictyostelium_purpureum_ 15 15
Entamoeba_dispar_1.2 7 7
Entamoeba_invadens_1.2 9 9
Entamoeba_histolytica_1 8 8
Selaginella_moellendorffii_ 20 20
Pinus_taeda   (Loblolly pine)   15 15
Picea_abies   (Norway spruce)   10 10
Eucalyptus_grandis_v201   (Rose gum)   37 37
Theobroma_cacao_B97-61/B2_v1   (Cacao)   28 26
Gossypium_raimondii_v221 155 155
Citrus_clementina_v165 43 43
Citrus_sinensis_v154   (Sweet orange)   83 83
Thellungiella_halophila_v173 29 29
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   43 43
Capsella_rubella_v183 28 28
Arabidopsis_lyrata_   (Lyrate rockcress)   30 30
Arabidopsis_thaliana_10   (Thale cress)   43 43
Carica_papaya_   (Papaya)   21 21
Medicago_truncatula_   (Barrel medic)   68 68
Phaseolus_vulgaris_v186   (French bean)   30 30
Glycine_max_v109   (Soybean)   61 61
Cucumis_sativus_v122   (Cucumber)   39 39
Fragaria_vesca_   (Wild strawberry)   27 27
Malus_domestica_v196   (Apple)   59 59
Prunus_persica_v139   (Peach)   36 36
Linum_usitatissimum_v200   (Flax)   43 43
Manihot_esculenta_v147   (Cassava)   42 42
Populus_trichocarpa_v156   (Black cottonwood)   47 47
Vitis_vinifera_   (Wine grape)   26 25
Mimulus_guttatus_v140   (Spotted monkey flower)   29 29
Solanum_lycopersicum_v.2.3   (Tomato)   25 25
Solanum_tuberosum_   (Potato)   31 31
Actinidia_chinensis_Hongyang_ 60 59
Aquilegia_coerulea_v195 67 67
Triticum_urartu_22 22 22
Triticum_aestivum_22   (Bread wheat)   68 68
Aegilops_tauschii_22 22 22
Brachypodium_distachyon_   (Stiff brome)   33 31
Oryza_barthii_22   (African wild rice)   34 34
Oryza_meridionalis_22 25 25
Oryza_glumaepatula_22 26 26
Oryza_glaberrima   (African rice)   19 19
Oryza_punctata_22 34 34
Oryza_nivara_22 33 33
Oryza_brachyantha_22   (Malo sina)   24 24
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   37 37
Oryza_sativa_v193   (Rice)   37 37
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   37 37
Panicum_virgatum_v202   (Switchgrass)   52 52
Setaria_italica_v164   (Foxtail millet)   36 36
Zea_mays_subsp._mays_   (Maize)   62 62
Zea_mays_v181   (Maize)   64 64
Sorghum_bicolor_   (Sorghum)   23 23
Musa_balbisiana   (Balbis banana)   35 34
Musa_acuminata_22   (Wild Malaysian banana)   36 35
Amborella_trichopoda_22 20 20
Physcomitrella_patens 22 22
Coccomyxa_subellipsoidea_sp._C-169_v2 13 12
Asterochloris_sp._Cgr/DA1pho_v1.0 12 10
Chlorella_variabilis_sp._NC64A_ 13 12
Chlorella_vulgaris_ 16 13
Volvox_carteri_f._nagariensis_ 10 10
Volvox_carteri_v199 9 9
Chlamydomonas_reinhardtii_4.0 15 12
Ostreococcus_sp._RCC809_ 12 11
Ostreococcus_lucimarinus_CCE9901_ 13 12
Ostreococcus_tauri_ 12 11
Bathycoccus_prasinos_ 13 12
Micromonas_sp._RCC299_ 8 7
Micromonas_pusilla_CCMP1545_v3.0 12 11
Cyanidioschyzon_merolae_strain_10D_22 9 9
Cyanidioschyzon_merolae 9 9
Porphyridium_purpureum_02_2012 15 14
Thecamonas_trahens_ATCC_50062_ 14 14
Bigelowiella_natans_CCMP2755_22 24 21
Giardia_lamblia_2.3 9 8
Cyanophora_paradoxa_ 7 7
Leishmania_mexicana_2.4 6 5
Leishmania_major_strain_Friedlin_ 6 5
Leishmania_infantum_JPCM5_2.4 6 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 6 5
Trypanosoma_vivax_ 8 7
Trypanosoma_cruzi_strain_CL_Brener 6 5
Trypanosoma_congolense_2.4 11 10
Trypanosoma_brucei_gambiense_v4.1 7 6
Trypanosoma_brucei_TREU927_v4.1 7 6
Ectocarpus_siliculosus 45 35
Aureococcus_anophagefferens_ 20 17
Albugo_laibachii_22 34 22
Pythium_iwayamai_DAOM_BR242034_22 30 23
Pythium_arrhenomanes_ATCC_12531_22 29 24
Pythium_ultimum_v1.7-2 28 22
Pythium_aphanidermatum_DAOM_BR444_22 29 21
Pythium_irregulare_DAOM_BR486_22 29 21
Pythium_vexans_DAOM_BR484_22 30 22
Phytophthora_ramorum_1.1   (Sudden oak death agent)   24 18
Phytophthora_sojae_1.1 22 16
Phytophthora_infestans_T30-4_ 25 22
Phytophthora_capsici_ 14 11
Hyaloperonospora_arabidopsidis_22 27 20
Phaeodactylum_tricornutumCCAP_1055/1 22 22
Fragilariopsis_cylindrus 36 36
Thalassiosira_pseudonana_CCMP1335 18 18
Perkinsus_marinus_ATCC_50983_ 31 31
Paramecium_tetraurelia_ 30 30
Tetrahymena_thermophila_SB210_1_ 14 14
Ichthyophthirius_multifiliis_strain_G5_ 11 11
Cryptosporidium_hominis 11 11
Cryptosporidium_muris 13 12
Cryptosporidium_parvum_Iowa_II 13 12
Neospora_caninum 13 12
Toxoplasma_gondii_VEG 12 11
Toxoplasma_gondii_ME49 13 12
Toxoplasma_gondii_GT1 11 10
Babesia_bovis_T2Bo_ 14 14
Theileria_parva__ 8 8
Theileria_annulata 10 10
Plasmodium_falciparum_3D7_ 7 7
Plasmodium_vivax_SaI-1_7.0 6 6
Plasmodium_knowlesi_strain_H_ 7 7
Plasmodium_yoelii_ssp._yoelii_1_ 7 7
Plasmodium_chabaudi_ 7 7
Plasmodium_berghei_ANKA_ 7 7
Symbiodinium_minutum_clade_B1_v1.2 2 2
Naegleria_gruberi_ 7 7
Trichomonas_vaginalis_ 132 132
Guillardia_theta_CCMP2712_v1.0_ 29 28
Emiliania_huxleyi_CCMP1516_ 33 25

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   83 65
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   58 41
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   33 23
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   25 17
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   37 27
Cryptococcus_neoformans_var._grubii_H99_ 15 11
Cryptococcus_neoformans_B-3501A_ 15 11
Cryptococcus_neoformans_JEC21_ 14 10
Paracoccidioides_brasiliensis_Pb01_ 10 7
Paracoccidioides_brasiliensis_Pb03_ 10 7
Coccidioides_posadasii_str._Silveira_ 10 7
Coccidioides_immitis_RMSCC_3703_ 9 7
Coccidioides_immitis_RMSCC_2394_ 11 8
Coccidioides_immitis_H538.4_ 11 8
Ajellomyces_dermatitidis_ER-3_ 12 9
Histoplasma_capsulatum_H143 9 7
Histoplasma_capsulatum_H88 12 9
Histoplasma_capsulatum_G186AR 13 10
Aspergillus_fumigatus_A1163_ 9 7
Candida_albicans_WO-1_ 12 9
Saccharomyces_cerevisiae_UC5 15 10
Saccharomyces_cerevisiae_PW5 14 9
Saccharomyces_cerevisiae_FL100 7 5
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 15 10
Saccharomyces_cerevisiae_YJM269 13 8
Saccharomyces_cerevisiae_T7 15 10
Saccharomyces_cerevisiae_FostersB 10 8
Saccharomyces_cerevisiae_FostersO 8 6
Saccharomyces_cerevisiae_VL3 9 6
Saccharomyces_cerevisiae_Vin13 8 5
Saccharomyces_cerevisiae_LalvinQA23 9 6
Saccharomyces_cerevisiae_AWRI796 10 7
Saccharomyces_cerevisiae_Sigma1278b 15 10
Saccharomyces_cerevisiae_W303 14 9
Saccharomyces_cerevisiae_JAY291 15 10
Saccharomyces_cerevisiae_AWRI1631 10 7
Saccharomyces_cerevisiae_YPS163 2 1
Saccharomyces_cerevisiae_CLIB215 13 8
Saccharomyces_cerevisiae_Y10 9 6
Saccharomyces_cerevisiae_YJM789_ 14 9
Saccharomyces_cerevisiae_YJM789 14 9
Saccharomyces_cerevisiae_RM11-1a 15 10
Saccharomyces_cerevisiae_RM11-1a_ 15 10
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   15 10
Schizosaccharomyces_pombe_972h-_ 14 10
Batrachochytrium_dendrobatidis_JEL423_ 12 11
Batrachochytrium_dendrobatidis_JAM81_ 12 11
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   25 25
Hordeum_vulgare_22   (Domesticated barley)   52 52
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   25 24
Trypanosoma_brucei_Lister_427_v4.1 7 6
Neospora_caninum_Nc-Liverpool_6.2 13 12
Plasmodium_falciparum_HB3_ 8 8
Plasmodium_falciparum_Dd2_ 6 6

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   74 54
Pan_troglodytes_69_2.1.4   (Chimpanzee)   49 36
Gorilla_gorilla_69_3.1   (Western gorilla)   55 42
Pongo_abelii_69_2   (Sumatran orangutan)   53 39
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   56 41
Macaca_mulatta_69_1   (Rhesus monkey)   50 37
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   61 44
Otolemur_garnettii_69_3   (Small-eared galago)   51 38
Microcebus_murinus_69_1   (Gray mouse lemur)   47 36
Rattus_norvegicus_69_3.4   (Norway rat)   51 38
Mus_musculus_69_38   (House mouse)   53 40
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   44 32
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   44 34
Cavia_porcellus_69_3   (Domestic guinea pig)   48 36
Oryctolagus_cuniculus_69_2   (Rabbit)   51 38
Ochotona_princeps_69   (American pika)   44 32
Tupaia_belangeri_69   (Northern tree shrew)   37 28
Sus_scrofa_69_10.2   (Pig)   38 32
Bos_taurus_69_3.1   (Cattle)   53 38
Vicugna_pacos_69_1   (Alpaca)   39 29
Tursiops_truncatus_69_1   (Bottlenose dolphin)   50 36
Mustela_putorius_furo_69_1.0   (Domestic ferret)   53 40
Ailuropoda_melanoleuca_69_1   (Giant panda)   51 38
Canis_familiaris_69_3.1   (Dog)   71 50
Felis_catus_69   (Domestic cat)   39 30
Equus_caballus_69_2   (Horse)   54 40
Myotis_lucifugus_69_2.0   (Little brown bat)   58 43
Pteropus_vampyrus_69_1   (Large flying fox)   51 38
Sorex_araneus_69_1   (European shrew)   40 28
Erinaceus_europaeus_69   (Western European hedgehog)   40 30
Procavia_capensis_69_1   (Cape rock hyrax)   45 33
Loxodonta_africana_69_3   (African savanna elephant)   51 38
Echinops_telfairi_69   (Small Madagascar hedgehog)   43 33
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   37 27
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   35 26
Macropus_eugenii_69_1.0   (Tammar wallaby)   42 32
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   50 36
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   50 36
Ornithorhynchus_anatinus_69_5   (Platypus)   44 36
Petromyzon_marinus_69_7.0   (Sea lamprey)   24 17
Meleagris_gallopavo_69_2   (Turkey)   48 35
Gallus_gallus_69_2   (Chicken)   47 34
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   46 34
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   44 33
Anolis_carolinensis_69_2.0   (Green anole)   46 32
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   49 36
Latimeria_chalumnae_69_1   (Coelacanth)   46 36
Gadus_morhua_69_1   (Atlantic cod)   64 49
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   67 46
Takifugu_rubripes_69_4   (Torafugu)   67 46
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   65 50
Oryzias_latipes_69_1   (Japanese medaka)   64 48
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   68 50
Oreochromis_niloticus_69_1.0   (Nile tilapia)   77 55
Danio_rerio_69_9   (Zebrafish)   67 49
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   21 15
Ciona_intestinalis_69   (Vase tunicate)   23 19
Drosophila_melanogaster_69_5   (Fruit fly)   29 20
Caenorhabditis_elegans_69_215   (Roundworm)   23 15
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   15 10
Arabidopsis_thaliana_10   (Thale cress)   28 28

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   402 278
Homo_sapiens__(NCBI_version)   (Human)   121 84
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   52 39
Heliconius_numata__(Incomplete) 6 5
Loa_loa_v3.3_(Request)   (Eye worm)   23 16
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   24 19
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   29 19
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 7
Encephalitozoon_intestinalis__(endoparasite) 6 5
Encephalitozoon_cuniculi_(endoparasite) 5 4
Lotus_japonicus__(Early_assembly) 20 20
Malus_x_domestica_(Duplicate)   (Apple)   59 59
Ricinus_communis__(Early_assembly)   (Castor bean)   29 29
Nicotiana_benthamiana_0.4.4_(Early_draft) 63 61
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   24 24
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   25 25
Phoenix_dactylifera__(Early_draft)   (Date palm)   24 20
Protozoadb_2010_08_(Protozoadb) 532 517
TargetDB__(Targets) 94 77
Protein_Data_Bank_(all_PDB_sequenc) 2275 2261
STRING_v9.0.5_(STRING) 3141 2441
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3448 3448
Uniprot_2018_03_genome 41549 31319
PDB_chains_(SCOP_1.75)_(PDB) 8 7
NCBI_2017_08_genome 60326 43288

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