SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for EF-hand superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a EF-hand domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1170 1021
Pan_troglodytes_76_2.1.4   (Chimpanzee)   292 254
Gorilla_gorilla_76_3.1   (Western gorilla)   400 346
Pongo_abelii_76_2   (Sumatran orangutan)   317 270
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   296 256
Papio_anubis_76   (Olive baboon)   329 279
Macaca_mulatta_76_1   (Rhesus monkey)   518 443
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   679 570
Otolemur_garnettii_76_3   (Small-eared galago)   352 312
Microcebus_murinus_76_1   (Gray mouse lemur)   239 204
Rattus_norvegicus_76_5.0   (Norway rat)   372 319
Mus_musculus_76_38   (House mouse)   689 600
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   221 194
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   294 262
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   312 275
Cavia_porcellus_76_3   (Domestic guinea pig)   295 256
Oryctolagus_cuniculus_76_2   (Rabbit)   294 250
Ochotona_princeps_76   (American pika)   230 202
Tupaia_belangeri_76   (Northern tree shrew)   206 181
Sus_scrofa_76_10.2   (Pig)   408 366
Bos_taurus_76_3.1   (Cattle)   322 275
Ovis_aries_76_3.1   (Sheep)   344 293
Vicugna_pacos_76_1   (Alpaca)   170 146
Tursiops_truncatus_76_1   (Bottlenose dolphin)   259 223
Mustela_putorius_furo_76_1.0   (Domestic ferret)   311 257
Ailuropoda_melanoleuca_76_1   (Giant panda)   343 294
Canis_familiaris_76_3.1   (Dog)   411 351
Felis_catus_76_6.2   (Domestic cat)   312 269
Equus_caballus_76_2   (Horse)   355 306
Myotis_lucifugus_76_2.0   (Little brown bat)   293 258
Pteropus_vampyrus_76_1   (Large flying fox)   271 234
Sorex_araneus_76_1   (European shrew)   159 142
Erinaceus_europaeus_76   (Western European hedgehog)   195 171
Procavia_capensis_76_1   (Cape rock hyrax)   260 228
Loxodonta_africana_76_3   (African savanna elephant)   405 345
Echinops_telfairi_76   (Small Madagascar hedgehog)   198 178
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   379 317
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   159 136
Macropus_eugenii_76_1.0   (Tammar wallaby)   236 209
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   341 284
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   372 270
Ornithorhynchus_anatinus_76_5   (Platypus)   257 235
Saccoglossus_kowalevskii_v3.0 456 398
Petromyzon_marinus_76_7.0   (Sea lamprey)   176 138
Meleagris_gallopavo_76_2   (Turkey)   252 217
Gallus_gallus_76_4   (Chicken)   249 219
Anas_platyrhynchos_76_1.0   (Mallard)   229 197
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   236 207
Ficedula_albicollis_76_1.0   (Collared flycatcher)   244 211
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   306 265
Anolis_carolinensis_76_2.0   (Green anole)   272 232
Xenopus_laevis_   (African clawed frog)   544 477
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   324 267
Latimeria_chalumnae_76_1   (Coelacanth)   313 272
Lepisosteus_oculatus_76   (Spotted gar)   399 322
Gadus_morhua_76_1   (Atlantic cod)   326 291
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   372 337
Takifugu_rubripes_76_4   (Torafugu)   851 726
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   441 387
Oryzias_latipes_76_1   (Japanese medaka)   374 331
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   331 291
Poecilia_formosa_76   (Amazon molly)   346 309
Oreochromis_niloticus_76_1.0   (Nile tilapia)   450 393
Astyanax_mexicanus_76   (Mexican tetra)   360 323
Danio_rerio_76_9   (Zebrafish)   591 512
Oikopleura_dioica 183 169
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   271 247
Ciona_intestinalis_76   (Vase tunicate)   193 170
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   256 222
Adineta_vaga 729 673
Octopus_bimaculoides_280 268 238
Crassostrea_gigas_22   (Pacific oyster)   347 289
Lottia_gigantea_   (Owl limpet)   297 262
Helobdella_robusta_ 212 191
Capitella_sp._I_ 276 240
Danaus_plexippus_OGS1.0   (Monarch butterfly)   125 111
Heliconius_melpomene_   (Postman butterfly)   106 94
Bombyx_mori_   (Domestic silkworm)   109 102
Nasonia_vitripennis_   (Jewel wasp)   95 82
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   279 235
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   117 102
Linepithema_humile_v1.1   (Argentine ant)   119 103
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   118 103
Solenopsis_invicta_v.2.2.3   (Red fire ant)   99 83
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   111 93
Atta_cephalotes_v1.1 115 99
Camponotus_floridanus_v3.3   (Florida carpenter ant)   115 100
Lucilia_cuprina   (Australian sheep blowfly)   108 88
Drosophila_grimshawi_1.3 128 110
Drosophila_willistoni_1.3 138 118
Drosophila_pseudoobscura_2.13 132 112
Drosophila_persimilis_1.3 127 109
Drosophila_suzukii 151 117
Drosophila_yakuba_1.3 137 120
Drosophila_simulans_1.3 115 99
Drosophila_sechellia_1.3 131 113
Drosophila_melanogaster_76_5   (Fruit fly)   341 276
Drosophila_erecta_1.3 129 112
Drosophila_ananassae_1.3 135 117
Drosophila_virilis_1.2 130 109
Drosophila_mojavensis_1.3 128 111
Megaselia_scalaris_22 54 49
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   145 125
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   121 109
Anopheles_darlingi_22   (American malaria mosquito)   79 66
Anopheles_gambiae_49_3j   (African malaria mosquito)   120 102
Tribolium_castaneum_3.0   (Red flour beetle)   137 114
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   120 105
Acyrthosiphon_pisum_   (Pea aphid)   106 92
Rhodnius_prolixus_22 110 101
Daphnia_pulex_   (Common water flea)   122 106
Strigamia_maritima_22 135 112
Sarcoptes_scabiei 90 80
Tetranychus_urticae_   (Two-spotted spider mite)   110 96
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   123 111
Pristionchus_pacificus_ 115 103
Meloidogyne_incognita_   (Southern root-knot nematode)   100 89
Meloidogyne_hapla_ 61 53
Onchocerca_volvulus_22 99 86
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   137 123
Caenorhabditis_japonica_ 109 94
Caenorhabditis_brenneri_ 139 119
Caenorhabditis_remanei_ 127 108
Caenorhabditis_elegans_76_235   (Roundworm)   225 191
Caenorhabditis_briggsae_2 116 99
Trichinella_spiralis_22 91 80
Hymenolepis_microstoma_ 135 119
Echinococcus_multilocularis_ 136 119
Echinococcus_granulosus_ 134 115
Taenia_solium_   (Pork tapeworm)   138 125
Schistosoma_mansoni_ 180 158
Mnemiopsis_leidyi   (Sea walnut)   219 193
Thelohanellus_kitauei 23 21
Acropora_digitifera_v1.0 187 173
Nematostella_vectensis_1.0   (Starlet sea anemone)   260 222
Hydra_vulgaris 167 148
Amphimedon_queenslandica 168 149
Trichoplax_adhaerens_ 156 131
Proterospongia_sp._ATCC_50818_ 153 138
Monosiga_brevicollis_ 116 103
Sphaeroforma_arctica_JP610_ 74 69
Capsaspora_owczarzaki_ATCC_30864_ 68 61
Conidiobolus_coronatus_NRRL28638_v1.0 42 37
Mortierella_verticillata_NRRL_6337_ 60 54
Phycomyces_blakesleeanus_ 63 51
Rhizopus_oryzae_RA_99-880_ 64 53
Mucor_circinelloides_ 69 61
Rhizomucor_miehei_CAU432_ 54 42
Malassezia_globosa_CBS_7966_ 36 32
Sporisorium_reilianum_22 25 23
Ustilago_maydis_ 27 25
Mixia_osmundae_IAM_14324_v1.0 24 22
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 26 23
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 29 26
Melampsora_laricis-populina_ 28 26
Rhodotorula_graminis_WP1_v1.0 23 20
Sporobolomyces_roseus_IAM_13481_ 19 19
Microbotryum_violaceum_22 26 24
Wallemia_sebi_v1.0 22 20
Sphaerobolus_stellatus_v1.0 32 29
Piloderma_croceum_F_1598_v1.0 40 33
Serpula_lacrymans_var._lacrymans_S7.9_ 33 27
Coniophora_puteana 28 25
Hydnomerulius_pinastri_v2.0 28 25
Paxillus_rubicundulus_Ve08.2h10_v1.0 28 26
Pisolithus_microcarpus_441_v1.0 30 27
Pisolithus_tinctorius_Marx_270_v1.0 36 33
Scleroderma_citrinum_Foug_A_v1.0 33 29
Coprinopsis_cinerea_okayama7_130_v3 31 26
Pleurotus_ostreatus_   (Oyster mushroom)   30 27
Amanita_thiersii_Skay4041_v1.0 33 30
Amanita_muscaria_Koide_v1.0   (Fly agaric)   36 33
Galerina_marginata_v1.0 40 35
Hebeloma_cylindrosporum_h7_v2.0 37 32
Laccaria_bicolor_S238N-H82_ 33 28
Agaricus_bisporus_var._bisporus_ 34 29
Schizophyllum_commune_ 35 31
Stereum_hirsutum_FP-91666_SS1__v1.0 31 27
Heterobasidion_annosum_ 28 25
Gloeophyllum_trabeumv1.0 29 26
Punctularia_strigosozonata_v1.0 30 27
Sebacina_vermifera_MAFF_305830_v1.0 33 30
Fomitiporia_mediterranea_v1.0 28 26
Tulasnella_calospora_AL13/4D_v1.0 40 38
Postia_placenta_ 46 37
Wolfiporia_cocos_MD-104_SS10__v1.0 29 24
Fomitopsis_pinicolav1.0 30 25
Fomitopsis_pinicola_FP-58527_SS1_v3.0 29 24
Phanerochaete_chrysosporium_RP-78_2.1 31 26
Dichomitus_squalens 32 26
Trametes_versicolor_v1.0 32 26
Tremella_mesenterica_   (Witches' butter)   22 21
Daldinia_eschscholzii_EC12_v1.0 32 28
Apiospora_montagnei_NRRL_25634_v1.0 30 28
Magnaporthe_poae_ATCC_64411_22 26 25
Magnaporthe_grisea_70-15_ 34 30
Podospora_anserina_ 32 26
Sporotrichum_thermophile_ATCC_42464_ 30 26
Thielavia_terrestris_NRRL_8126_ 30 26
Chaetomium_globosum_CBS_148.51_ 30 26
Neurospora_tetrasperma_ 28 26
Neurospora_discreta_FGSC_8579_ 28 26
Neurospora_crassa_OR74A_ 33 29
Cryphonectria_parasitica_   (Chestnut blight fungus)   29 25
Verticillium_albo-atrum_VaMs.102_ 26 23
Verticillium_dahliae_VdLs.17_ 28 24
Acremonium_alcalophilumv_1.0 26 24
Glomerella_graminicola_22 33 29
Fusarium_graminearum_ 28 24
Nectria_haematococca_mpVI_ 31 26
Fusarium_oxysporum_f._sp._lycopersici_4286_ 35 31
Fusarium_verticillioides_7600_ 29 24
Trichoderma_asperellum_CBS_433.97_v1.0 29 25
Trichoderma_atroviride_ 30 26
Trichoderma_citrinoviride_v1.0 29 25
Trichoderma_reesei_1.2 29 25
Trichoderma_virens_Gv29-8_ 30 26
Trichoderma_longibrachiatum_ATCC_18648_v1.0 28 24
Trichoderma_harzianum_CBS_226.95_v1.0 29 25
Amorphotheca_resinae_v1.0   (Creosote fungus)   30 26
Botrytis_cinerea_B05.10_ 33 29
Sclerotinia_sclerotiorum_ 31 27
Blumeria_graminis_22 30 26
Didymella_exigua_CBS_183.55_v1.0 29 25
Leptosphaeria_maculans_22 30 27
Setosphaeria_turcica_v1.0 31 27
Cochliobolus_miyabeanus_ATCC_44560_v1.0 32 28
Cochliobolus_victoriae_FI3_v1.0 31 27
Cochliobolus_carbonum_26-R-13_v1.0 31 27
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   30 26
Alternaria_brassicicola_ 28 24
Cochliobolus_lunatus_m118_v2.0 31 27
Pyrenophora_teres_f._teres_22 31 27
Pyrenophora_tritici-repentis_ 29 25
Stagonospora_nodorum_ 30 26
Mycosphaerella_graminicola_IPO323_ 30 26
Zasmidium_cellare_ATCC_36951_v1.0 30 26
Dothistroma_septosporum 31 27
Septoria_musiva_v1.0 34 30
Mycosphaerella_fijiensis_CIRAD86_ 27 23
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 32 28
Paracoccidioides_brasiliensis_Pb18_ 27 25
Coccidioides_posadasii_RMSCC_3488_ 32 28
Coccidioides_immitis_RS_ 36 31
Ajellomyces_dermatitidis_SLH14081_ 30 26
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 30 26
Microsporum_canis_CBS_113480_ 29 25
Trichophyton_equinum_CBS_127.97_ 26 22
Trichophyton_verrucosum_HKI_0517_ 26 24
Arthroderma_benhamiae_CBS_112371_ 29 25
Trichophyton_tonsurans_CBS_112818_ 29 25
Trichophyton_rubrum_CBS_118892_ 28 24
Uncinocarpus_reesii_1704_ 27 23
Aspergillus_zonatus_v1.0 34 30
Penicillium_chrysogenum_Wisconsin_54-1255_ 33 29
Penicillium_chrysogenum_v1.0 30 26
Aspergillus_acidus_v1.0 33 29
Aspergillus_fumigatus_Af293 31 27
Aspergillus_brasiliensis_v1.0 33 29
Aspergillus_nidulans_FGSC_A4_ 31 27
Aspergillus_sydowii_v1.0 35 30
Aspergillus_versicolor_v1.0 34 30
Aspergillus_glaucus 31 27
Aspergillus_carbonarius_ITEM_5010_ 32 28
Neosartorya_fischeri_NRRL_181_ 31 27
Aspergillus_terreus_NIH2624_ 32 28
Aspergillus_tubingensis_v1.0 33 29
Aspergillus_wentii_v1.0 33 28
Aspergillus_oryzae_RIB40_ 30 26
Aspergillus_niger_22 32 28
Aspergillus_niger_ATCC_1015_ 21 19
Aspergillus_flavus_NRRL3357_ 34 30
Aspergillus_clavatus_NRRL_1_ 29 26
Penicillium_marneffei_ATCC_18224_ 34 30
Tuber_melanosporum_Mel28_22 30 26
Tuber_melanosporum_Vittad_   (Perigord truffle)   30 26
Hansenula_polymorpha_v2.0 23 19
Dekkera_bruxellensis_CBS_2499_v2.0 23 19
Pichia_membranifaciensv1.0 22 18
Candida_tanzawaensis_NRRL_Y-17324__v1.0 22 18
Candida_dubliniensis_CD36_ 23 19
Candida_tropicalis_MYA-3404_ 20 17
Candida_parapsilosis_ 20 17
Candida_albicans_SC5314 22 18
Lodderomyces_elongisporus_NRRL_YB-4239_ 21 17
Babjeviella_inositovora_NRRL_Y-12698_v1.0 23 19
Pichia_stipitis_CBS_6054_ 22 18
Candida_guilliermondii_ATCC_6260_ 19 16
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 22 18
Debaromyces_hansenii 23 19
Wickerhamomyces_anomalus 24 19
Pichia_pastoris_GS115_ 23 19
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 19 15
Yarrowia_lipolytica_CLIB122 26 22
Candida_lusitaniae_ATCC_42720_ 22 18
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 23 19
Vanderwaltozyma_polyspora_DSM_70294_ 24 19
Candida_glabrata_CBS138 22 18
Kluyveromyces_thermotolerans_CBS_6340 20 16
Lachancea_kluyveri_ 21 17
Kluyveromyces_waltii 20 16
Ashbya_gossypii_ATCC_10895_ 21 17
Zygosaccharomyces_rouxii_ 21 17
Saccharomyces_mikatae_MIT 20 17
Saccharomyces_paradoxus_MIT 21 17
Saccharomyces_cerevisiae_76   (Baker's yeast)   22 18
Saccharomyces_bayanus_MIT 23 19
Kluyveromyces_lactis 21 17
Schizosaccharomyces_cryophilus_OY26_22 27 22
Schizosaccharomyces_octosporus_yFS286_ 26 20
Schizosaccharomyces_japonicus_yFS275_ 27 21
Schizosaccharomyces_pombe   (Fission yeast)   27 21
Catenaria_anguillulae_PL171_v1.0 53 46
Allomyces_macrogynus_ATCC_38327_ 109 93
Spizellomyces_punctatus_DAOM_BR117_ 65 56
Dictyostelium_discoideum 78 74
Dictyostelium_purpureum_ 77 73
Entamoeba_dispar_1.2 66 54
Entamoeba_invadens_1.2 103 88
Entamoeba_histolytica_1 66 54
Selaginella_moellendorffii_ 235 221
Pinus_taeda   (Loblolly pine)   208 191
Picea_abies   (Norway spruce)   124 121
Eucalyptus_grandis_v201   (Rose gum)   316 303
Theobroma_cacao_B97-61/B2_v1   (Cacao)   174 163
Gossypium_raimondii_v221 607 558
Citrus_clementina_v165 264 254
Citrus_sinensis_v154   (Sweet orange)   315 294
Thellungiella_halophila_v173 223 207
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   318 300
Capsella_rubella_v183 204 192
Arabidopsis_lyrata_   (Lyrate rockcress)   207 196
Arabidopsis_thaliana_10   (Thale cress)   273 253
Carica_papaya_   (Papaya)   144 141
Medicago_truncatula_   (Barrel medic)   338 323
Phaseolus_vulgaris_v186   (French bean)   234 221
Glycine_max_v109   (Soybean)   449 425
Cucumis_sativus_v122   (Cucumber)   224 208
Fragaria_vesca_   (Wild strawberry)   171 157
Malus_domestica_v196   (Apple)   393 373
Prunus_persica_v139   (Peach)   179 170
Linum_usitatissimum_v200   (Flax)   325 302
Manihot_esculenta_v147   (Cassava)   269 254
Populus_trichocarpa_v156   (Black cottonwood)   306 285
Vitis_vinifera_   (Wine grape)   156 148
Mimulus_guttatus_v140   (Spotted monkey flower)   219 208
Solanum_lycopersicum_v.2.3   (Tomato)   212 203
Solanum_tuberosum_   (Potato)   256 252
Actinidia_chinensis_Hongyang_ 274 257
Aquilegia_coerulea_v195 255 237
Triticum_urartu_22 160 152
Triticum_aestivum_22   (Bread wheat)   473 453
Aegilops_tauschii_22 165 158
Brachypodium_distachyon_   (Stiff brome)   229 215
Oryza_barthii_22   (African wild rice)   244 234
Oryza_meridionalis_22 226 214
Oryza_glumaepatula_22 270 260
Oryza_glaberrima   (African rice)   168 159
Oryza_punctata_22 264 248
Oryza_nivara_22 260 247
Oryza_brachyantha_22   (Malo sina)   186 178
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   257 243
Oryza_sativa_v193   (Rice)   256 242
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   226 208
Panicum_virgatum_v202   (Switchgrass)   374 356
Setaria_italica_v164   (Foxtail millet)   223 208
Zea_mays_subsp._mays_   (Maize)   407 385
Zea_mays_v181   (Maize)   431 407
Sorghum_bicolor_   (Sorghum)   182 173
Musa_balbisiana   (Balbis banana)   261 245
Musa_acuminata_22   (Wild Malaysian banana)   249 236
Amborella_trichopoda_22 111 107
Physcomitrella_patens 170 156
Coccomyxa_subellipsoidea_sp._C-169_v2 51 43
Asterochloris_sp._Cgr/DA1pho_v1.0 58 52
Chlorella_variabilis_sp._NC64A_ 53 50
Chlorella_vulgaris_ 48 44
Volvox_carteri_f._nagariensis_ 118 104
Volvox_carteri_v199 110 98
Chlamydomonas_reinhardtii_4.0 128 116
Ostreococcus_sp._RCC809_ 44 38
Ostreococcus_lucimarinus_CCE9901_ 43 39
Ostreococcus_tauri_ 44 38
Bathycoccus_prasinos_ 49 44
Micromonas_sp._RCC299_ 98 85
Micromonas_pusilla_CCMP1545_v3.0 138 115
Cyanidioschyzon_merolae_strain_10D_22 13 12
Cyanidioschyzon_merolae 13 12
Porphyridium_purpureum_02_2012 76 62
Thecamonas_trahens_ATCC_50062_ 188 169
Bigelowiella_natans_CCMP2755_22 399 364
Giardia_lamblia_2.3 30 28
Cyanophora_paradoxa_ 103 101
Leishmania_mexicana_2.4 68 64
Leishmania_major_strain_Friedlin_ 71 66
Leishmania_infantum_JPCM5_2.4 70 65
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 71 67
Trypanosoma_vivax_ 78 73
Trypanosoma_cruzi_strain_CL_Brener 85 76
Trypanosoma_congolense_2.4 94 87
Trypanosoma_brucei_gambiense_v4.1 91 84
Trypanosoma_brucei_TREU927_v4.1 92 84
Ectocarpus_siliculosus 250 211
Aureococcus_anophagefferens_ 291 254
Albugo_laibachii_22 151 104
Pythium_iwayamai_DAOM_BR242034_22 224 177
Pythium_arrhenomanes_ATCC_12531_22 209 160
Pythium_ultimum_v1.7-2 221 165
Pythium_aphanidermatum_DAOM_BR444_22 208 157
Pythium_irregulare_DAOM_BR486_22 235 174
Pythium_vexans_DAOM_BR484_22 204 158
Phytophthora_ramorum_1.1   (Sudden oak death agent)   201 159
Phytophthora_sojae_1.1 212 170
Phytophthora_infestans_T30-4_ 238 187
Phytophthora_capsici_ 161 136
Hyaloperonospora_arabidopsidis_22 60 45
Phaeodactylum_tricornutumCCAP_1055/1 72 69
Fragilariopsis_cylindrus 124 123
Thalassiosira_pseudonana_CCMP1335 86 81
Perkinsus_marinus_ATCC_50983_ 255 232
Paramecium_tetraurelia_ 882 768
Tetrahymena_thermophila_SB210_1_ 365 274
Ichthyophthirius_multifiliis_strain_G5_ 234 177
Cryptosporidium_hominis 37 35
Cryptosporidium_muris 46 42
Cryptosporidium_parvum_Iowa_II 45 42
Neospora_caninum 72 63
Toxoplasma_gondii_VEG 65 60
Toxoplasma_gondii_ME49 66 61
Toxoplasma_gondii_GT1 64 60
Babesia_bovis_T2Bo_ 54 50
Theileria_parva__ 28 26
Theileria_annulata 31 29
Plasmodium_falciparum_3D7_ 73 70
Plasmodium_vivax_SaI-1_7.0 44 40
Plasmodium_knowlesi_strain_H_ 43 41
Plasmodium_yoelii_ssp._yoelii_1_ 39 37
Plasmodium_chabaudi_ 47 42
Plasmodium_berghei_ANKA_ 45 41
Symbiodinium_minutum_clade_B1_v1.2 1493 1347
Naegleria_gruberi_ 123 112
Trichomonas_vaginalis_ 174 149
Guillardia_theta_CCMP2712_v1.0_ 419 390
Emiliania_huxleyi_CCMP1516_ 320 314
Leptolyngbya_sp._PCC_7376 1 1
Acaryochloris_marina_MBIC11017 2 2
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 2 2
Synechococcus_sp._CC9311 3 3
Synechococcus_elongatus_PCC_7942 1 1
Microcoleus_sp._PCC_7113 4 4
Trichodesmium_erythraeum_IMS101 2 2
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 2 2
cyanobacterium_UCYN-A 1 1
Microcystis_aeruginosa_NIES-843 3 3
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 2 2
Anabaena_variabilis_ATCC_29413 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 2 2
Nostoc_sp._PCC_7120 1 1
Mycoplasma_wenyonii_str._Massachusetts 1 1
Slackia_heliotrinireducens_DSM_20476 1 1
Catenulispora_acidiphila_DSM_44928 3 3
Stackebrandtia_nassauensis_DSM_44728 2 2
Frankia_symbiont_of_Datisca_glomerata 1 1
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 4 4
Thermomonospora_curvata_DSM_43183 3 3
Streptosporangium_roseum_DSM_43021 2 2
Kitasatospora_setae_KM-6054 10 10
Streptomyces_coelicolor_A3(2) 4 4
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 3 3
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_violaceusniger_Tu_4113 3 3
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 5 5
Actinosynnema_mirum_DSM_43827 3 3
Saccharopolyspora_erythraea_NRRL_2338 2 2
Amycolatopsis_mediterranei_U32 1 1
Actinoplanes_sp._N902-109 1 1
Deinococcus_deserti_VCD115 1 1
Ruminococcus_albus_7 3 3
Oscillibacter_valericigenes_Sjm18-20 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Bacillus_weihenstephanensis_KBAB4 2 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Staphylococcus_pseudintermedius_HKU10-03 1 1
Staphylococcus_saprophyticus_subsp._saprophyticus_ATCC_15305 1 1
Staphylococcus_lugdunensis_HKU09-01 1 1
Staphylococcus_haemolyticus_JCSC1435 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Saprospira_grandis_str._Lewin 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Krokinobacter_sp._4H-3-7-5 2 2
Lacinutrix_sp._5H-3-7-4 4 4
Maribacter_sp._HTCC2170 2 2
Zobellia_galactanivorans 3 3
Cellulophaga_algicola_DSM_14237 3 3
Cellulophaga_lytica_DSM_7489 1 1
Polaribacter_sp._MED152 3 3
Planctomyces_brasiliensis_DSM_5305 14 12
Planctomyces_limnophilus_DSM_3776 6 5
Rhodopirellula_baltica_SH_1 9 8
Pirellula_staleyi_DSM_6068 13 8
Coraliomargarita_akajimensis_DSM_45221 1 1
Opitutus_terrae_PB90-1 1 1
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Turneriella_parva_DSM_21527 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Denitrovibrio_acetiphilus_DSM_12809 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Terriglobus_saanensis_SP1PR4 3 1
Terriglobus_roseus_DSM_18391 2 1
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
Bdellovibrio_bacteriovorus_HD100 3 3
Sulfurospirillum_deleyianum_DSM_6946 2 2
Sulfurospirillum_barnesii_SES-3 3 2
Arcobacter_sp._L 2 2
Arcobacter_nitrofigilis_DSM_7299 1 1
Arcobacter_butzleri_RM4018 1 1
Campylobacter_concisus_13826 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 1 1
Sulfuricurvum_kujiense_DSM_16994 2 2
Sulfurimonas_denitrificans_DSM_1251 1 1
Wolinella_succinogenes_DSM_1740 1 1
Helicobacter_cinaedi_PAGU611 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Desulfobacca_acetoxidans_DSM_11109 1 1
Syntrophobacter_fumaroxidans_MPOB 5 5
Desulfotalea_psychrophila_LSv54 1 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfobacterium_autotrophicum_HRM2 3 3
Desulfovibrio_piezophilus 4 4
Desulfovibrio_aespoeensis_Aspo-2 2 2
Lawsonia_intracellularis_PHE/MN1-00 1 1
Desulfovibrio_magneticus_RS-1 5 5
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 2 2
Desulfovibrio_salexigens_DSM_2638 5 5
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Desulfovibrio_africanus_str._Walvis_Bay 18 16
Geobacter_lovleyi_SZ 3 3
Geobacter_sulfurreducens_KN400 1 1
Pelobacter_propionicus_DSM_2379 2 2
Pelobacter_carbinolicus_DSM_2380 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 4 4
Stigmatella_aurantiaca_DW4/3-1 2 2
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Dechloromonas_aromatica_RCB 1 1
Azoarcus_sp._KH32C 2 2
Azoarcus_sp._BH72 1 1
Aromatoleum_aromaticum_EbN1 1 1
Dechlorosoma_suillum_PS 1 1
Pseudogulbenkiania_sp._NH8B 1 1
Laribacter_hongkongensis_HLHK9 2 1
beta_proteobacterium_CB 1 1
Methylibium_petroleiphilum_PM1 2 2
Rubrivivax_gelatinosus_IL144 1 1
Burkholderia_phytofirmans_PsJN 2 2
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Ralstonia_eutropha_JMP134 3 3
Cupriavidus_taiwanensis_LMG_19424 4 4
Cupriavidus_metallidurans_CH34 4 4
Cupriavidus_necator_N-1 3 3
Ralstonia_eutropha_H16 2 2
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1 1
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_cenocepacia_HI2424 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 2 2
Verminephrobacter_eiseniae_EF01-2 1 1
Ramlibacter_tataouinensis_TTB310 3 3
Delftia_sp._Cs1-4 3 3
Delftia_acidovorans_SPH-1 3 3
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 1 1
Acidovorax_ebreus_TPSY 3 3
Acidovorax_sp._KKS102 4 4
Acidovorax_sp._JS42 2 2
Acidovorax_citrulli_AAC00-1 3 3
Acidovorax_avenae_subsp._avenae_ATCC_19860 4 4
Comamonas_testosteroni_CNB-2 2 2
Pusillimonas_sp._T7-7 1 1
Advenella_kashmirensis_WT001 1 1
Bordetella_avium_197N 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans 1 1
Thiobacillus_denitrificans_ATCC_25259 1 1
Nitrosospira_multiformis_ATCC_25196 3 3
Nitrosomonas_sp._Is79A3 3 2
Sideroxydans_lithotrophicus_ES-1 1 1
Gallionella_capsiferriformans_ES-2 2 2
Methylotenera_versatilis_301 7 7
Methylotenera_mobilis_JLW8 2 2
Methylovorus_sp._MP688 8 8
Methylovorus_glucosetrophus_SIP3-4 8 8
Methylobacillus_flagellatus_KT 3 3
Magnetococcus_marinus_MC-1 2 2
Parvularcula_bermudensis_HTCC2503 5 4
Asticcacaulis_excentricus_CB_48 8 8
Brevundimonas_subvibrioides_ATCC_15264 3 3
Caulobacter_sp._K31 5 5
Caulobacter_crescentus_NA1000 4 4
Caulobacter_segnis_ATCC_21756 7 6
Phenylobacterium_zucineum_HLK1 2 2
Erythrobacter_litoralis_HTCC2594 4 4
Sphingopyxis_alaskensis_RB2256 3 3
Novosphingobium_sp._PP1Y 1 1
Novosphingobium_aromaticivorans_DSM_12444 2 2
Sphingobium_sp._SYK-6 4 4
Sphingobium_japonicum_UT26S 4 4
Sphingobium_chlorophenolicum_L-1 5 5
Sphingomonas_sp._MM-1 5 5
Sphingomonas_wittichii_RW1 6 6
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 2 2
Maricaulis_maris_MCS10 4 4
Hirschia_baltica_ATCC_49814 4 4
Hyphomonas_neptunium_ATCC_15444 3 3
Dinoroseobacter_shibae_DFL_12 5 5
Phaeobacter_gallaeciensis_2.10 1 1
Pseudovibrio_sp._FO-BEG1 3 2
Jannaschia_sp._CCS1 5 5
Ruegeria_sp._TM1040 5 5
Ruegeria_pomeroyi_DSS-3 3 3
Ketogulonicigenium_vulgare_Y25 1 1
Ketogulonigenium_vulgarum_WSH-001 1 1
Roseobacter_litoralis_Och_149 6 6
Roseobacter_denitrificans_OCh_114 2 2
Rhodobacter_sphaeroides_ATCC_17029 3 3
Rhodobacter_capsulatus_SB_1003 3 3
Rhodospirillum_photometricum_DSM_122 3 3
Tistrella_mobilis_KA081020-065 2 2
Magnetospirillum_magneticum_AMB-1 3 3
Rhodospirillum_centenum_SW 4 4
Rhodospirillum_rubrum_F11 1 1
Azospirillum_lipoferum_4B 1 1
Azospirillum_brasilense_Sp245 1 1
Granulibacter_bethesdensis_CGDNIH1 1 1
Acetobacter_pasteurianus_IFO_3283-01 1 1
Polymorphum_gilvum_SL003B-26A1 2 1
Micavibrio_aeruginosavorus_ARL-13 3 3
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Candidatus_Pelagibacter_sp._IMCC9063 1 1
Xanthobacter_autotrophicus_Py2 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 4 4
Methylobacterium_sp._4-46 2 2
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 3 3
Methylobacterium_radiotolerans_JCM_2831 2 2
Parvibaculum_lavamentivorans_DS-1 2 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 1 1
Sinorhizobium_medicae_WSM419 3 3
Sinorhizobium_meliloti_AK83 2 2
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Rhizobium_etli_CIAT_652 2 2
Rhizobium_leguminosarum_bv._viciae_3841 6 6
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_radiobacter_K84 2 2
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 2 2
Mesorhizobium_sp._BNC1 3 3
Mesorhizobium_opportunistum_WSM2075 4 4
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 2
Mesorhizobium_loti_MAFF303099 2 2
Methylocella_silvestris_BL2 2 2
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Pelagibacterium_halotolerans_B2 2 2
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 4 4
Hyphomicrobium_denitrificans_ATCC_51888 3 3
Oligotropha_carboxidovorans_OM4 2 2
Rhodopseudomonas_palustris_BisA53 3 3
Bradyrhizobium_japonicum_USDA_110 4 4
Bradyrhizobium_sp._ORS_278 2 2
Methylocystis_sp._SC2 2 2
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 1 1
Cellvibrio_japonicus_Ueda107 2 1
Tolumonas_auensis_DSM_9187 1 1
Vibrio_furnissii_NCTC_11218 1 1
Psychromonas_ingrahamii_37 2 2
Shewanella_halifaxensis_HAW-EB4 2 2
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 4 4
Pseudoalteromonas_sp._SM9913 12 12
Pseudoalteromonas_atlantica_T6c 5 5
Pseudoalteromonas_haloplanktis_TAC125 12 12
Glaciecola_sp._4H-3-7+YE-5 5 5
Glaciecola_nitratireducens_FR1064 3 3
Alteromonas_sp._SN2 5 5
Alteromonas_macleodii_str._'Deep_ecotype' 4 4
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 5 5
Marinomonas_mediterranea_MMB-1 1 1
Halomonas_elongata_DSM_2581 6 1
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 1 1
Rhodanobacter_denitrificans 1 1
Pseudoxanthomonas_spadix_BD-a59 8 8
Pseudoxanthomonas_suwonensis_11-1 6 6
Stenotrophomonas_maltophilia_K279a 6 6
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 6 6
Xanthomonas_albilineans_GPE_PC73 4 4
Xanthomonas_oryzae_pv._oryzae_PXO99A 5 5
Xanthomonas_campestris_pv._campestris_str._B100 4 4
Spiribacter_sp._UAH-SP71 1 1
Allochromatium_vinosum_DSM_180 2 2
Thiocystis_violascens_DSM_198 2 2
Nitrosococcus_watsonii_C-113 2 2
Nitrosococcus_halophilus_Nc4 6 6
Nitrosococcus_oceani_ATCC_19707 2 2
gamma_proteobacterium_HdN1 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_sp._VLB120 1 1
Acinetobacter_oleivorans_DR1 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Thiomicrospira_crunogena_XCL-2 1 1
Francisella_noatunensis_subsp._orientalis_str._Toba_04 1 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1
Francisella_tularensis_subsp._tularensis_WY96-3418 1 1
Francisella_novicida_U112 1 1
Pyrobaculum_sp._1860 1 1
Thermoproteus_uzoniensis_768-20 1 1
Methanohalobium_evestigatum_Z-7303 3 3
Thermococcus_gammatolerans_EJ3 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 3 3
Methanobrevibacter_smithii_ATCC_35061 2 2
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   560 479
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   271 220
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   150 130
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   128 112
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   179 151
Cryptococcus_neoformans_var._grubii_H99_ 29 25
Cryptococcus_neoformans_B-3501A_ 29 25
Cryptococcus_neoformans_JEC21_ 27 23
Paracoccidioides_brasiliensis_Pb01_ 30 26
Paracoccidioides_brasiliensis_Pb03_ 29 25
Coccidioides_posadasii_str._Silveira_ 29 25
Coccidioides_immitis_RMSCC_3703_ 29 25
Coccidioides_immitis_RMSCC_2394_ 29 25
Coccidioides_immitis_H538.4_ 28 25
Ajellomyces_dermatitidis_ER-3_ 30 26
Histoplasma_capsulatum_H143 29 26
Histoplasma_capsulatum_H88 30 26
Histoplasma_capsulatum_G186AR 29 25
Aspergillus_fumigatus_A1163_ 31 27
Candida_albicans_WO-1_ 22 18
Saccharomyces_cerevisiae_UC5 19 15
Saccharomyces_cerevisiae_PW5 18 16
Saccharomyces_cerevisiae_FL100 9 9
Saccharomyces_cerevisiae_CLIB324 7 6
Saccharomyces_cerevisiae_CBS7960 13 12
Saccharomyces_cerevisiae_YJM269 13 12
Saccharomyces_cerevisiae_T7 22 18
Saccharomyces_cerevisiae_FostersB 18 16
Saccharomyces_cerevisiae_FostersO 15 15
Saccharomyces_cerevisiae_VL3 16 16
Saccharomyces_cerevisiae_Vin13 16 14
Saccharomyces_cerevisiae_LalvinQA23 16 14
Saccharomyces_cerevisiae_AWRI796 21 17
Saccharomyces_cerevisiae_Sigma1278b 22 18
Saccharomyces_cerevisiae_W303 22 18
Saccharomyces_cerevisiae_JAY291 22 18
Saccharomyces_cerevisiae_AWRI1631 15 13
Saccharomyces_cerevisiae_YPS163 10 9
Saccharomyces_cerevisiae_M22 11 9
Saccharomyces_cerevisiae_T73 8 7
Saccharomyces_cerevisiae_CLIB215 12 11
Saccharomyces_cerevisiae_Y10 7 6
Saccharomyces_cerevisiae_YJM789_ 22 18
Saccharomyces_cerevisiae_YJM789 20 17
Saccharomyces_cerevisiae_RM11-1a 21 17
Saccharomyces_cerevisiae_RM11-1a_ 21 17
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   22 18
Schizosaccharomyces_pombe_972h-_ 27 21
Batrachochytrium_dendrobatidis_JEL423_ 54 47
Batrachochytrium_dendrobatidis_JAM81_ 54 46
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   177 166
Hordeum_vulgare_22   (Domesticated barley)   288 278
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   206 196
Trypanosoma_brucei_Lister_427_v4.1 92 84
Neospora_caninum_Nc-Liverpool_6.2 72 63
Plasmodium_falciparum_HB3_ 55 53
Plasmodium_falciparum_Dd2_ 42 40
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Cyanobium_gracile_PCC_6307 2 2
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._CC9902 1 1
Synechococcus_sp._RCC307 2 2
Synechococcus_sp._CC9605 3 3
Synechococcus_sp._WH_8102 2 2
Synechococcus_sp._WH_7803 2 2
Synechococcus_elongatus_PCC_6301 1 1
Prochlorococcus_marinus_str._AS9601 1 1
Prochlorococcus_marinus_str._MIT_9313 2 2
Prochlorococcus_marinus_str._MIT_9303 2 2
Crinalium_epipsammum_PCC_9333 4 4
Oscillatoria_nigro-viridis_PCC_7112 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 3 3
Cyanothece_sp._PCC_7424 2 2
Cyanothece_sp._ATCC_51142 4 4
Cyanothece_sp._PCC_8801 2 2
Cyanobacterium_aponinum_PCC_10605 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Cylindrospermum_stagnale_PCC_7417 5 5
Mycoplasma_ovis_str._Michigan 1 1
Mycoplasma_cynos_C142 1 1
Candidatus_Mycoplasma_haemolamae_str._Purdue 1 1
Nocardiopsis_alba_ATCC_BAA-2165 3 3
Streptomyces_albus_J1074 2 2
Streptomyces_rapamycinicus_NRRL_5491 5 5
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 5 5
Streptomyces_venezuelae_ATCC_10712 3 3
Streptomyces_collinus_Tu_365 5 5
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 5 5
Saccharothrix_espanaensis_DSM_44229 10 10
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 2 2
Nocardia_brasiliensis_ATCC_700358 4 4
Deinococcus_peraridilitoris_DSM_19664 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Streptococcus_oligofermentans_AS_1.3089 1 1
Exiguobacterium_antarcticum_B7 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_BMB171 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 1 1
Bacillus_cereus_ATCC_14579 1 1
Bacillus_cereus_ATCC_10987 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_pseudintermedius_ED99 1 1
Staphylococcus_pasteuri_SP1 1 1
Staphylococcus_lugdunensis_N920143 1 1
Staphylococcus_warneri_SG1 1 1
Staphylococcus_epidermidis_ATCC_12228 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 2 2
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_RF122 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_6850 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_SA40 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 1 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1 1
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_S0385 1 1
Staphylococcus_aureus_subsp._aureus_Mu3 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Staphylococcus_aureus_subsp._aureus_Mu50 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Nonlabens_dokdonensis_DSW-6 1 1
Singulisphaera_acidiphila_DSM_18658 8 5
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Bdellovibrio_exovorus_JSS 2 2
Bdellovibrio_bacteriovorus_str._Tiberius 3 3
Arcobacter_butzleri_7h1h 2 1
Desulfocapsa_sulfexigens_DSM_10523 2 2
Lawsonia_intracellularis_N343 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 4 4
Desulfovibrio_vulgaris_RCH1 2 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 4 4
Desulfovibrio_vulgaris_str._Hildenborough 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 5 5
Desulfovibrio_desulfuricans_ND132 3 3
Geobacter_sulfurreducens_PCA 2 2
Sorangium_cellulosum_So0157-2 8 7
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_phenoliruptrix_BR3459a 1 1
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 2 2
Burkholderia_sp._YI23 1 1
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 2 2
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Variovorax_paradoxus_B4 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Nitrosomonas_sp._AL212 1 1
Sulfuricella_denitrificans_skB26 1 1
Caulobacter_crescentus_CB15 4 4
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 2 2
Zymomonas_mobilis_subsp._mobilis_CP4 2 2
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 2 2
Zymomonas_mobilis_subsp._mobilis_ZM4 2 2
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 2 2
Phaeobacter_gallaeciensis_DSM_17395 2 2
Phaeobacter_gallaeciensis_DSM_26640 3 3
Leisingera_methylohalidivorans_DSM_14336 4 4
Octadecabacter_antarcticus_307 2 2
Octadecabacter_arcticus_238 2 2
Rhodobacter_sphaeroides_KD131 3 3
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 3 3
Paracoccus_aminophilus_JCM_7686 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Rhodospirillum_rubrum_ATCC_11170 1 1
Gluconobacter_oxydans_H24 1 1
Acetobacter_pasteurianus_386B 1 1
Acetobacter_pasteurianus_IFO_3283-12 1 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1 1
Acetobacter_pasteurianus_IFO_3283-32 1 1
Acetobacter_pasteurianus_IFO_3283-26 1 1
Acetobacter_pasteurianus_IFO_3283-22 1 1
Acetobacter_pasteurianus_IFO_3283-07 1 1
Acetobacter_pasteurianus_IFO_3283-03 1 1
Micavibrio_aeruginosavorus_EPB 2 2
Methylobacterium_extorquens_DM4 2 2
Methylobacterium_extorquens_PA1 1 1
Brucella_ceti_TE10759-12 1 1
Brucella_ceti_TE28753-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Brucella_abortus_bv._1_str._9-941 1 1
Sinorhizobium_fredii_USDA_257 2 2
Sinorhizobium_fredii_HH103 2 2
Sinorhizobium_meliloti_2011 2 2
Sinorhizobium_meliloti_GR4 2 2
Sinorhizobium_meliloti_Rm41 4 4
Sinorhizobium_meliloti_SM11 2 2
Sinorhizobium_meliloti_BL225C 2 2
Sinorhizobium_meliloti_1021 2 2
Rhizobium_etli_CFN_42 3 3
Rhizobium_etli_bv._mimosae_str._Mim1 3 3
Rhizobium_tropici_CIAT_899 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 4 4
Rhizobium_leguminosarum_bv._trifolii_WSM1325 4 4
Mesorhizobium_australicum_WSM2073 3 3
Hyphomicrobium_nitrativorans_NL23 6 6
Hyphomicrobium_denitrificans_1NES1 1 1
Oligotropha_carboxidovorans_OM5 2 2
Oligotropha_carboxidovorans_OM5 2 2
Rhodopseudomonas_palustris_DX-1 2 2
Rhodopseudomonas_palustris_TIE-1 2 2
Rhodopseudomonas_palustris_HaA2 3 3
Rhodopseudomonas_palustris_BisB5 2 2
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 2 2
Bradyrhizobium_sp._S23321 2 2
Bradyrhizobium_sp._BTAi1 3 3
Bradyrhizobium_oligotrophicum_S58 2 2
Bradyrhizobium_japonicum_USDA_6 2 2
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Vibrio_sp._EJY3 1 1
Glaciecola_psychrophila_170 5 5
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 5 4
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 6 5
Alteromonas_macleodii_str._'Ionian_Sea_U8' 4 4
Alteromonas_macleodii_str._'Ionian_Sea_U7' 4 4
Alteromonas_macleodii_str._'Ionian_Sea_U4' 4 4
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 4 4
Alteromonas_macleodii_str._'English_Channel_615' 4 4
Alteromonas_macleodii_AltDE1 6 5
Alteromonas_macleodii_str._'English_Channel_673' 6 5
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 6 5
Alteromonas_macleodii_str._'Black_Sea_11' 6 5
Alteromonas_macleodii_ATCC_27126 7 6
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 8 8
Stenotrophomonas_maltophilia_JV3 6 6
Stenotrophomonas_maltophilia_R551-3 6 6
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 6 6
Xanthomonas_campestris_pv._vesicatoria_str._85-10 6 6
Xanthomonas_axonopodis_pv._citrumelo_F1 6 6
Xanthomonas_axonopodis_Xac29-1 6 6
Xanthomonas_oryzae_pv._oryzicola_BLS256 5 5
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 5 5
Xanthomonas_oryzae_pv._oryzae_KACC_10331 5 5
Xanthomonas_campestris_pv._raphani_756C 5 5
Xanthomonas_campestris_pv._campestris_str._8004 5 5
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 5 5
Thioflavicoccus_mobilis_8321 2 2
Dickeya_dadantii_3937 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 2 2
Pseudomonas_syringae_pv._phaseolicola_1448A 2 1
Pseudomonas_syringae_pv._syringae_B728a 2 1
Pseudomonas_monteilii_SB3101 3 3
Pseudomonas_monteilii_SB3078 3 3
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 2 2
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_fluorescens_F113 2 1
Pseudomonas_fluorescens_R124 2 1
Pseudomonas_fluorescens_Pf0-1 3 2
Pseudomonas_resinovorans_NBRC_106553 2 2
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 2 2
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Francisella_noatunensis_subsp._orientalis_LADL--07-285A 1 1
Francisella_tularensis_subsp._holarctica_F92 1 1
Francisella_tularensis_subsp._holarctica_FTNF002-00 1 1
Francisella_tularensis_subsp._holarctica_OSU18 1 1
Francisella_tularensis_subsp._holarctica_LVS 1 1
Francisella_tularensis_subsp._holarctica_FSC200 1 1
Francisella_tularensis_subsp._tularensis_TIGB03 1 1
Francisella_tularensis_subsp._tularensis_TI0902 1 1
Francisella_tularensis_subsp._tularensis_NE061598 1 1
Francisella_tularensis_subsp._tularensis_FSC198 1 1
Francisella_tularensis_subsp._tularensis_SCHU_S4 1 1
Francisella_cf._novicida_Fx1 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   327 281
Pan_troglodytes_69_2.1.4   (Chimpanzee)   285 247
Gorilla_gorilla_69_3.1   (Western gorilla)   307 262
Pongo_abelii_69_2   (Sumatran orangutan)   292 249
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   279 240
Macaca_mulatta_69_1   (Rhesus monkey)   313 274
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   310 269
Otolemur_garnettii_69_3   (Small-eared galago)   345 305
Microcebus_murinus_69_1   (Gray mouse lemur)   239 204
Rattus_norvegicus_69_3.4   (Norway rat)   310 270
Mus_musculus_69_38   (House mouse)   311 268
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   221 194
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   268 239
Cavia_porcellus_69_3   (Domestic guinea pig)   280 244
Oryctolagus_cuniculus_69_2   (Rabbit)   272 238
Ochotona_princeps_69   (American pika)   230 202
Tupaia_belangeri_69   (Northern tree shrew)   206 181
Sus_scrofa_69_10.2   (Pig)   302 267
Bos_taurus_69_3.1   (Cattle)   292 251
Vicugna_pacos_69_1   (Alpaca)   170 146
Tursiops_truncatus_69_1   (Bottlenose dolphin)   259 223
Mustela_putorius_furo_69_1.0   (Domestic ferret)   308 254
Ailuropoda_melanoleuca_69_1   (Giant panda)   301 261
Canis_familiaris_69_3.1   (Dog)   308 264
Felis_catus_69   (Domestic cat)   221 196
Equus_caballus_69_2   (Horse)   293 254
Myotis_lucifugus_69_2.0   (Little brown bat)   283 249
Pteropus_vampyrus_69_1   (Large flying fox)   271 234
Sorex_araneus_69_1   (European shrew)   159 142
Erinaceus_europaeus_69   (Western European hedgehog)   195 171
Procavia_capensis_69_1   (Cape rock hyrax)   260 228
Loxodonta_africana_69_3   (African savanna elephant)   296 258
Echinops_telfairi_69   (Small Madagascar hedgehog)   198 178
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   182 169
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   159 136
Macropus_eugenii_69_1.0   (Tammar wallaby)   236 209
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   269 231
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   326 258
Ornithorhynchus_anatinus_69_5   (Platypus)   230 210
Petromyzon_marinus_69_7.0   (Sea lamprey)   151 124
Meleagris_gallopavo_69_2   (Turkey)   223 192
Gallus_gallus_69_2   (Chicken)   216 187
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   232 203
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   255 223
Anolis_carolinensis_69_2.0   (Green anole)   255 220
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   251 214
Latimeria_chalumnae_69_1   (Coelacanth)   262 229
Gadus_morhua_69_1   (Atlantic cod)   318 283
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   311 281
Takifugu_rubripes_69_4   (Torafugu)   310 274
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   328 289
Oryzias_latipes_69_1   (Japanese medaka)   296 262
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   330 290
Oreochromis_niloticus_69_1.0   (Nile tilapia)   352 309
Danio_rerio_69_9   (Zebrafish)   373 321
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   136 123
Ciona_intestinalis_69   (Vase tunicate)   180 157
Drosophila_melanogaster_69_5   (Fruit fly)   132 115
Caenorhabditis_elegans_69_215   (Roundworm)   121 105
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   22 18
Arabidopsis_thaliana_10   (Thale cress)   206 192

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1207 1054
Homo_sapiens__(NCBI_version)   (Human)   570 466
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   304 261
Heliconius_numata__(Incomplete) 34 34
Loa_loa_v3.3_(Request)   (Eye worm)   103 90
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   99 93
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   78 68
Moniliophthora_perniciosa_FA553__(Genome_survey) 18 18
Encephalitozoon_intestinalis__(endoparasite) 8 8
Encephalitozoon_cuniculi_(endoparasite) 8 8
Picea_sitchensis__(Incomplete)   (Sitka spruce)   35 35
Lotus_japonicus__(Early_assembly) 165 159
Malus_x_domestica_(Duplicate)   (Apple)   393 373
Ricinus_communis__(Early_assembly)   (Castor bean)   167 157
Nicotiana_benthamiana_0.4.4_(Early_draft) 379 360
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   208 199
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   212 203
Phoenix_dactylifera__(Early_draft)   (Date palm)   117 113
NCBI_plasmid_sequences_(Plasmids) 53 53
PDB_chains_(SCOP_1.75)_(PDB) 217 215
Protozoadb_2010_08_(Protozoadb) 2109 1909
Protein_Data_Bank_(all_PDB_sequenc) 2302 2268
UniProt__viral_sequences_(Viral) 30 30
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5819 5819
NCBI_viral_sequences_(Viral) 15 15
STRING_v9.0.5_(STRING) 16565 14561
Uniprot_2018_03_genome 206497 182476
NCBI_2017_08_genome 261704 224365
TargetDB__(Targets) 814 734

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