SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Calponin-homology domain, CH-domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Calponin-homology domain, CH-domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   333 333
Pan_troglodytes_76_2.1.4   (Chimpanzee)   66 66
Gorilla_gorilla_76_3.1   (Western gorilla)   103 103
Pongo_abelii_76_2   (Sumatran orangutan)   77 77
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   71 71
Papio_anubis_76   (Olive baboon)   84 84
Macaca_mulatta_76_1   (Rhesus monkey)   152 151
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   183 183
Otolemur_garnettii_76_3   (Small-eared galago)   73 73
Microcebus_murinus_76_1   (Gray mouse lemur)   65 58
Rattus_norvegicus_76_5.0   (Norway rat)   87 87
Mus_musculus_76_38   (House mouse)   207 207
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   70 67
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   70 70
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   84 83
Cavia_porcellus_76_3   (Domestic guinea pig)   73 73
Oryctolagus_cuniculus_76_2   (Rabbit)   72 72
Ochotona_princeps_76   (American pika)   64 61
Tupaia_belangeri_76   (Northern tree shrew)   62 59
Sus_scrofa_76_10.2   (Pig)   80 80
Bos_taurus_76_3.1   (Cattle)   77 77
Ovis_aries_76_3.1   (Sheep)   86 86
Vicugna_pacos_76_1   (Alpaca)   38 36
Tursiops_truncatus_76_1   (Bottlenose dolphin)   68 67
Mustela_putorius_furo_76_1.0   (Domestic ferret)   75 75
Ailuropoda_melanoleuca_76_1   (Giant panda)   93 93
Canis_familiaris_76_3.1   (Dog)   113 112
Felis_catus_76_6.2   (Domestic cat)   76 76
Equus_caballus_76_2   (Horse)   113 113
Myotis_lucifugus_76_2.0   (Little brown bat)   71 71
Pteropus_vampyrus_76_1   (Large flying fox)   72 71
Sorex_araneus_76_1   (European shrew)   48 45
Erinaceus_europaeus_76   (Western European hedgehog)   60 54
Procavia_capensis_76_1   (Cape rock hyrax)   71 68
Loxodonta_africana_76_3   (African savanna elephant)   97 97
Echinops_telfairi_76   (Small Madagascar hedgehog)   55 53
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   92 92
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   33 31
Macropus_eugenii_76_1.0   (Tammar wallaby)   74 69
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   86 86
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   79 79
Ornithorhynchus_anatinus_76_5   (Platypus)   78 77
Saccoglossus_kowalevskii_v3.0 85 81
Petromyzon_marinus_76_7.0   (Sea lamprey)   44 44
Meleagris_gallopavo_76_2   (Turkey)   73 73
Gallus_gallus_76_4   (Chicken)   65 65
Anas_platyrhynchos_76_1.0   (Mallard)   62 62
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   65 65
Ficedula_albicollis_76_1.0   (Collared flycatcher)   64 64
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   71 71
Anolis_carolinensis_76_2.0   (Green anole)   63 63
Xenopus_laevis_   (African clawed frog)   91 91
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   76 76
Latimeria_chalumnae_76_1   (Coelacanth)   89 89
Lepisosteus_oculatus_76   (Spotted gar)   103 103
Gadus_morhua_76_1   (Atlantic cod)   90 89
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   118 118
Takifugu_rubripes_76_4   (Torafugu)   330 330
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   111 111
Oryzias_latipes_76_1   (Japanese medaka)   103 103
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   95 95
Poecilia_formosa_76   (Amazon molly)   99 97
Oreochromis_niloticus_76_1.0   (Nile tilapia)   124 124
Astyanax_mexicanus_76   (Mexican tetra)   103 103
Danio_rerio_76_9   (Zebrafish)   186 186
Oikopleura_dioica 27 27
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   51 51
Ciona_intestinalis_76   (Vase tunicate)   28 28
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   53 48
Adineta_vaga 93 93
Octopus_bimaculoides_280 116 113
Crassostrea_gigas_22   (Pacific oyster)   53 48
Lottia_gigantea_   (Owl limpet)   50 48
Helobdella_robusta_ 62 62
Capitella_sp._I_ 47 45
Danaus_plexippus_OGS1.0   (Monarch butterfly)   31 29
Heliconius_melpomene_   (Postman butterfly)   33 30
Bombyx_mori_   (Domestic silkworm)   30 28
Nasonia_vitripennis_   (Jewel wasp)   27 26
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   86 82
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   30 28
Linepithema_humile_v1.1   (Argentine ant)   38 36
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   41 39
Solenopsis_invicta_v.2.2.3   (Red fire ant)   33 32
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   33 31
Atta_cephalotes_v1.1 38 36
Camponotus_floridanus_v3.3   (Florida carpenter ant)   31 29
Lucilia_cuprina   (Australian sheep blowfly)   30 28
Drosophila_grimshawi_1.3 35 32
Drosophila_willistoni_1.3 35 33
Drosophila_pseudoobscura_2.13 36 34
Drosophila_persimilis_1.3 32 30
Drosophila_suzukii 37 32
Drosophila_yakuba_1.3 35 33
Drosophila_simulans_1.3 28 26
Drosophila_sechellia_1.3 32 30
Drosophila_melanogaster_76_5   (Fruit fly)   133 129
Drosophila_erecta_1.3 33 31
Drosophila_ananassae_1.3 30 28
Drosophila_virilis_1.2 34 32
Drosophila_mojavensis_1.3 34 32
Megaselia_scalaris_22 23 23
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   36 35
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   27 26
Anopheles_darlingi_22   (American malaria mosquito)   25 22
Anopheles_gambiae_49_3j   (African malaria mosquito)   32 29
Tribolium_castaneum_3.0   (Red flour beetle)   32 29
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   32 30
Acyrthosiphon_pisum_   (Pea aphid)   33 31
Rhodnius_prolixus_22 25 24
Daphnia_pulex_   (Common water flea)   30 28
Strigamia_maritima_22 37 36
Sarcoptes_scabiei 26 24
Tetranychus_urticae_   (Two-spotted spider mite)   24 21
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   25 25
Pristionchus_pacificus_ 30 29
Meloidogyne_incognita_   (Southern root-knot nematode)   21 21
Meloidogyne_hapla_ 14 14
Onchocerca_volvulus_22 28 28
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   38 38
Caenorhabditis_japonica_ 30 29
Caenorhabditis_brenneri_ 44 43
Caenorhabditis_remanei_ 31 30
Caenorhabditis_elegans_76_235   (Roundworm)   84 79
Caenorhabditis_briggsae_2 31 30
Trichinella_spiralis_22 21 21
Hymenolepis_microstoma_ 38 37
Echinococcus_multilocularis_ 38 38
Echinococcus_granulosus_ 41 40
Taenia_solium_   (Pork tapeworm)   45 43
Schistosoma_mansoni_ 42 42
Mnemiopsis_leidyi   (Sea walnut)   53 47
Thelohanellus_kitauei 12 11
Acropora_digitifera_v1.0 43 41
Nematostella_vectensis_1.0   (Starlet sea anemone)   65 62
Hydra_vulgaris 37 36
Amphimedon_queenslandica 52 47
Trichoplax_adhaerens_ 34 33
Proterospongia_sp._ATCC_50818_ 36 32
Monosiga_brevicollis_ 22 21
Sphaeroforma_arctica_JP610_ 29 24
Capsaspora_owczarzaki_ATCC_30864_ 25 23
Conidiobolus_coronatus_NRRL28638_v1.0 10 10
Mortierella_verticillata_NRRL_6337_ 13 13
Phycomyces_blakesleeanus_ 17 17
Rhizopus_oryzae_RA_99-880_ 17 17
Mucor_circinelloides_ 16 16
Rhizomucor_miehei_CAU432_ 20 20
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 5 5
Ustilago_maydis_ 5 5
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5 5
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 4 4
Sporobolomyces_roseus_IAM_13481_ 5 5
Microbotryum_violaceum_22 5 5
Wallemia_sebi_v1.0 4 4
Sphaerobolus_stellatus_v1.0 8 8
Piloderma_croceum_F_1598_v1.0 5 5
Serpula_lacrymans_var._lacrymans_S7.9_ 5 5
Coniophora_puteana 6 6
Hydnomerulius_pinastri_v2.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 6
Pisolithus_microcarpus_441_v1.0 5 5
Pisolithus_tinctorius_Marx_270_v1.0 5 5
Scleroderma_citrinum_Foug_A_v1.0 5 5
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   5 5
Amanita_thiersii_Skay4041_v1.0 5 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5 5
Galerina_marginata_v1.0 7 7
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 8 8
Agaricus_bisporus_var._bisporus_ 5 5
Schizophyllum_commune_ 4 4
Stereum_hirsutum_FP-91666_SS1__v1.0 4 4
Heterobasidion_annosum_ 4 4
Gloeophyllum_trabeumv1.0 6 6
Punctularia_strigosozonata_v1.0 5 5
Sebacina_vermifera_MAFF_305830_v1.0 9 9
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 6 6
Postia_placenta_ 6 6
Wolfiporia_cocos_MD-104_SS10__v1.0 5 5
Fomitopsis_pinicolav1.0 6 6
Fomitopsis_pinicola_FP-58527_SS1_v3.0 6 6
Phanerochaete_chrysosporium_RP-78_2.1 5 5
Dichomitus_squalens 6 6
Trametes_versicolor_v1.0 6 6
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 5 5
Apiospora_montagnei_NRRL_25634_v1.0 6 6
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 5 5
Podospora_anserina_ 5 5
Sporotrichum_thermophile_ATCC_42464_ 5 5
Thielavia_terrestris_NRRL_8126_ 5 5
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 5 5
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 5 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 5
Verticillium_albo-atrum_VaMs.102_ 5 5
Verticillium_dahliae_VdLs.17_ 5 5
Acremonium_alcalophilumv_1.0 5 5
Glomerella_graminicola_22 5 5
Fusarium_graminearum_ 5 5
Nectria_haematococca_mpVI_ 5 5
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5 5
Fusarium_verticillioides_7600_ 5 5
Trichoderma_asperellum_CBS_433.97_v1.0 5 5
Trichoderma_atroviride_ 5 5
Trichoderma_citrinoviride_v1.0 5 5
Trichoderma_reesei_1.2 5 5
Trichoderma_virens_Gv29-8_ 5 5
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 5 5
Amorphotheca_resinae_v1.0   (Creosote fungus)   5 5
Botrytis_cinerea_B05.10_ 5 5
Sclerotinia_sclerotiorum_ 5 5
Blumeria_graminis_22 7 6
Didymella_exigua_CBS_183.55_v1.0 7 7
Leptosphaeria_maculans_22 6 6
Setosphaeria_turcica_v1.0 6 6
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 6
Cochliobolus_victoriae_FI3_v1.0 6 6
Cochliobolus_carbonum_26-R-13_v1.0 6 6
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   6 6
Alternaria_brassicicola_ 6 6
Cochliobolus_lunatus_m118_v2.0 6 6
Pyrenophora_teres_f._teres_22 7 7
Pyrenophora_tritici-repentis_ 6 6
Stagonospora_nodorum_ 6 6
Mycosphaerella_graminicola_IPO323_ 7 7
Zasmidium_cellare_ATCC_36951_v1.0 7 7
Dothistroma_septosporum 6 6
Septoria_musiva_v1.0 6 6
Mycosphaerella_fijiensis_CIRAD86_ 7 7
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6 6
Paracoccidioides_brasiliensis_Pb18_ 6 6
Coccidioides_posadasii_RMSCC_3488_ 8 8
Coccidioides_immitis_RS_ 8 8
Ajellomyces_dermatitidis_SLH14081_ 6 6
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6 6
Microsporum_canis_CBS_113480_ 6 6
Trichophyton_equinum_CBS_127.97_ 6 6
Trichophyton_verrucosum_HKI_0517_ 6 6
Arthroderma_benhamiae_CBS_112371_ 6 6
Trichophyton_tonsurans_CBS_112818_ 6 6
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 6 6
Aspergillus_zonatus_v1.0 6 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 6 6
Aspergillus_fumigatus_Af293 6 6
Aspergillus_brasiliensis_v1.0 6 6
Aspergillus_nidulans_FGSC_A4_ 6 6
Aspergillus_sydowii_v1.0 6 6
Aspergillus_versicolor_v1.0 6 6
Aspergillus_glaucus 6 6
Aspergillus_carbonarius_ITEM_5010_ 6 6
Neosartorya_fischeri_NRRL_181_ 6 6
Aspergillus_terreus_NIH2624_ 6 6
Aspergillus_tubingensis_v1.0 6 6
Aspergillus_wentii_v1.0 6 6
Aspergillus_oryzae_RIB40_ 6 6
Aspergillus_niger_22 5 5
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 6 6
Aspergillus_clavatus_NRRL_1_ 6 6
Penicillium_marneffei_ATCC_18224_ 6 6
Tuber_melanosporum_Mel28_22 6 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   6 6
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 5 5
Pichia_membranifaciensv1.0 6 6
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 5 5
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 5 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4 4
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 4 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 3 3
Pichia_pastoris_GS115_ 5 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 5 5
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 4 4
Candida_glabrata_CBS138 4 4
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 4 4
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 4 4
Zygosaccharomyces_rouxii_ 4 4
Saccharomyces_mikatae_MIT 3 3
Saccharomyces_paradoxus_MIT 4 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 4
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 4 4
Schizosaccharomyces_cryophilus_OY26_22 6 6
Schizosaccharomyces_octosporus_yFS286_ 6 6
Schizosaccharomyces_japonicus_yFS275_ 5 5
Schizosaccharomyces_pombe   (Fission yeast)   6 6
Catenaria_anguillulae_PL171_v1.0 10 10
Allomyces_macrogynus_ATCC_38327_ 23 23
Spizellomyces_punctatus_DAOM_BR117_ 17 17
Dictyostelium_discoideum 36 35
Dictyostelium_purpureum_ 36 35
Entamoeba_dispar_1.2 34 34
Entamoeba_invadens_1.2 42 42
Entamoeba_histolytica_1 35 35
Selaginella_moellendorffii_ 33 33
Pinus_taeda   (Loblolly pine)   17 17
Picea_abies   (Norway spruce)   14 14
Eucalyptus_grandis_v201   (Rose gum)   17 17
Theobroma_cacao_B97-61/B2_v1   (Cacao)   14 14
Gossypium_raimondii_v221 53 53
Citrus_clementina_v165 17 17
Citrus_sinensis_v154   (Sweet orange)   20 20
Thellungiella_halophila_v173 18 18
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   22 22
Capsella_rubella_v183 17 17
Arabidopsis_lyrata_   (Lyrate rockcress)   16 16
Arabidopsis_thaliana_10   (Thale cress)   19 19
Carica_papaya_   (Papaya)   10 10
Medicago_truncatula_   (Barrel medic)   25 25
Phaseolus_vulgaris_v186   (French bean)   20 20
Glycine_max_v109   (Soybean)   31 31
Cucumis_sativus_v122   (Cucumber)   23 23
Fragaria_vesca_   (Wild strawberry)   12 12
Malus_domestica_v196   (Apple)   31 27
Prunus_persica_v139   (Peach)   12 12
Linum_usitatissimum_v200   (Flax)   27 27
Manihot_esculenta_v147   (Cassava)   18 18
Populus_trichocarpa_v156   (Black cottonwood)   22 22
Vitis_vinifera_   (Wine grape)   15 15
Mimulus_guttatus_v140   (Spotted monkey flower)   14 14
Solanum_lycopersicum_v.2.3   (Tomato)   16 16
Solanum_tuberosum_   (Potato)   26 26
Actinidia_chinensis_Hongyang_ 25 25
Aquilegia_coerulea_v195 23 23
Triticum_urartu_22 11 11
Triticum_aestivum_22   (Bread wheat)   53 53
Aegilops_tauschii_22 21 20
Brachypodium_distachyon_   (Stiff brome)   18 18
Oryza_barthii_22   (African wild rice)   25 25
Oryza_meridionalis_22 24 24
Oryza_glumaepatula_22 29 29
Oryza_glaberrima   (African rice)   15 15
Oryza_punctata_22 29 29
Oryza_nivara_22 37 37
Oryza_brachyantha_22   (Malo sina)   16 16
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16 16
Oryza_sativa_v193   (Rice)   16 16
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   25 24
Panicum_virgatum_v202   (Switchgrass)   32 32
Setaria_italica_v164   (Foxtail millet)   15 15
Zea_mays_subsp._mays_   (Maize)   27 27
Zea_mays_v181   (Maize)   28 28
Sorghum_bicolor_   (Sorghum)   14 14
Musa_balbisiana   (Balbis banana)   21 19
Musa_acuminata_22   (Wild Malaysian banana)   19 19
Amborella_trichopoda_22 10 10
Physcomitrella_patens 15 15
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 3 3
Chlorella_variabilis_sp._NC64A_ 3 3
Chlorella_vulgaris_ 5 5
Volvox_carteri_f._nagariensis_ 5 5
Volvox_carteri_v199 8 7
Chlamydomonas_reinhardtii_4.0 5 5
Ostreococcus_sp._RCC809_ 4 4
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 3 3
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 7 7
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 2 2
Cyanidioschyzon_merolae 2 2
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 48 46
Bigelowiella_natans_CCMP2755_22 27 25
Giardia_lamblia_2.3 4 4
Cyanophora_paradoxa_ 17 16
Leishmania_mexicana_2.4 6 6
Leishmania_major_strain_Friedlin_ 6 6
Leishmania_infantum_JPCM5_2.4 6 6
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 6 6
Trypanosoma_vivax_ 5 5
Trypanosoma_cruzi_strain_CL_Brener 7 7
Trypanosoma_congolense_2.4 9 8
Trypanosoma_brucei_gambiense_v4.1 10 9
Trypanosoma_brucei_TREU927_v4.1 10 9
Ectocarpus_siliculosus 18 15
Aureococcus_anophagefferens_ 14 14
Albugo_laibachii_22 16 14
Pythium_iwayamai_DAOM_BR242034_22 18 17
Pythium_arrhenomanes_ATCC_12531_22 14 13
Pythium_ultimum_v1.7-2 15 14
Pythium_aphanidermatum_DAOM_BR444_22 16 15
Pythium_irregulare_DAOM_BR486_22 17 16
Pythium_vexans_DAOM_BR484_22 14 13
Phytophthora_ramorum_1.1   (Sudden oak death agent)   14 13
Phytophthora_sojae_1.1 14 14
Phytophthora_infestans_T30-4_ 15 15
Phytophthora_capsici_ 12 11
Hyaloperonospora_arabidopsidis_22 10 9
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 2 2
Perkinsus_marinus_ATCC_50983_ 6 6
Paramecium_tetraurelia_ 44 39
Tetrahymena_thermophila_SB210_1_ 23 18
Ichthyophthirius_multifiliis_strain_G5_ 20 17
Cryptosporidium_hominis 3 3
Cryptosporidium_muris 3 3
Cryptosporidium_parvum_Iowa_II 3 3
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 4 4
Plasmodium_vivax_SaI-1_7.0 5 5
Plasmodium_knowlesi_strain_H_ 3 3
Plasmodium_yoelii_ssp._yoelii_1_ 3 3
Plasmodium_chabaudi_ 5 5
Plasmodium_berghei_ANKA_ 5 5
Symbiodinium_minutum_clade_B1_v1.2 15 15
Naegleria_gruberi_ 27 26
Trichomonas_vaginalis_ 25 24
Guillardia_theta_CCMP2712_v1.0_ 23 21
Emiliania_huxleyi_CCMP1516_ 40 40
Methanococcus_vannielii_SB 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   112 112
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   96 94
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   41 38
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   35 34
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   58 53
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 6 6
Paracoccidioides_brasiliensis_Pb03_ 6 6
Coccidioides_posadasii_str._Silveira_ 6 6
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 6 6
Coccidioides_immitis_H538.4_ 7 7
Ajellomyces_dermatitidis_ER-3_ 6 6
Histoplasma_capsulatum_H143 6 6
Histoplasma_capsulatum_H88 6 6
Histoplasma_capsulatum_G186AR 6 6
Aspergillus_fumigatus_A1163_ 6 6
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 3 3
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 2 2
Saccharomyces_cerevisiae_YJM269 3 3
Saccharomyces_cerevisiae_T7 4 4
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 3 3
Saccharomyces_cerevisiae_VL3 4 4
Saccharomyces_cerevisiae_Vin13 3 3
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 4 4
Saccharomyces_cerevisiae_W303 4 4
Saccharomyces_cerevisiae_JAY291 4 4
Saccharomyces_cerevisiae_AWRI1631 3 3
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_M22 2 2
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 4 4
Saccharomyces_cerevisiae_YJM789 4 4
Saccharomyces_cerevisiae_RM11-1a 3 3
Saccharomyces_cerevisiae_RM11-1a_ 4 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 4
Schizosaccharomyces_pombe_972h-_ 6 6
Batrachochytrium_dendrobatidis_JEL423_ 10 10
Batrachochytrium_dendrobatidis_JAM81_ 10 10
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   12 12
Hordeum_vulgare_22   (Domesticated barley)   38 38
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   18 18
Trypanosoma_brucei_Lister_427_v4.1 10 9
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 4 4
Plasmodium_falciparum_Dd2_ 2 2
Staphylococcus_pasteuri_SP1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   77 77
Pan_troglodytes_69_2.1.4   (Chimpanzee)   65 65
Gorilla_gorilla_69_3.1   (Western gorilla)   77 77
Pongo_abelii_69_2   (Sumatran orangutan)   72 72
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   64 64
Macaca_mulatta_69_1   (Rhesus monkey)   81 80
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   81 81
Otolemur_garnettii_69_3   (Small-eared galago)   70 70
Microcebus_murinus_69_1   (Gray mouse lemur)   65 58
Rattus_norvegicus_69_3.4   (Norway rat)   74 74
Mus_musculus_69_38   (House mouse)   76 76
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   70 67
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   63 63
Cavia_porcellus_69_3   (Domestic guinea pig)   71 71
Oryctolagus_cuniculus_69_2   (Rabbit)   68 68
Ochotona_princeps_69   (American pika)   64 61
Tupaia_belangeri_69   (Northern tree shrew)   62 59
Sus_scrofa_69_10.2   (Pig)   67 67
Bos_taurus_69_3.1   (Cattle)   71 71
Vicugna_pacos_69_1   (Alpaca)   38 36
Tursiops_truncatus_69_1   (Bottlenose dolphin)   68 67
Mustela_putorius_furo_69_1.0   (Domestic ferret)   75 75
Ailuropoda_melanoleuca_69_1   (Giant panda)   76 76
Canis_familiaris_69_3.1   (Dog)   79 78
Felis_catus_69   (Domestic cat)   57 56
Equus_caballus_69_2   (Horse)   69 69
Myotis_lucifugus_69_2.0   (Little brown bat)   66 66
Pteropus_vampyrus_69_1   (Large flying fox)   72 71
Sorex_araneus_69_1   (European shrew)   48 45
Erinaceus_europaeus_69   (Western European hedgehog)   60 54
Procavia_capensis_69_1   (Cape rock hyrax)   71 68
Loxodonta_africana_69_3   (African savanna elephant)   66 66
Echinops_telfairi_69   (Small Madagascar hedgehog)   55 53
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   59 52
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   33 31
Macropus_eugenii_69_1.0   (Tammar wallaby)   74 69
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   67 67
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   71 71
Ornithorhynchus_anatinus_69_5   (Platypus)   69 68
Petromyzon_marinus_69_7.0   (Sea lamprey)   37 37
Meleagris_gallopavo_69_2   (Turkey)   56 56
Gallus_gallus_69_2   (Chicken)   55 55
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   59 59
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   56 56
Anolis_carolinensis_69_2.0   (Green anole)   64 64
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   65 65
Latimeria_chalumnae_69_1   (Coelacanth)   68 68
Gadus_morhua_69_1   (Atlantic cod)   88 87
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   91 91
Takifugu_rubripes_69_4   (Torafugu)   89 89
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   88 88
Oryzias_latipes_69_1   (Japanese medaka)   81 81
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   95 95
Oreochromis_niloticus_69_1.0   (Nile tilapia)   92 92
Danio_rerio_69_9   (Zebrafish)   106 106
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   22 22
Ciona_intestinalis_69   (Vase tunicate)   25 25
Drosophila_melanogaster_69_5   (Fruit fly)   30 29
Caenorhabditis_elegans_69_215   (Roundworm)   33 29
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 4
Arabidopsis_thaliana_10   (Thale cress)   16 16

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   383 383
Homo_sapiens__(NCBI_version)   (Human)   138 138
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   73 73
Heliconius_numata__(Incomplete) 19 19
Loa_loa_v3.3_(Request)   (Eye worm)   31 31
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   33 31
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   21 21
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 4 4
Encephalitozoon_cuniculi_(endoparasite) 4 4
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 18 18
Malus_x_domestica_(Duplicate)   (Apple)   31 27
Ricinus_communis__(Early_assembly)   (Castor bean)   12 12
Nicotiana_benthamiana_0.4.4_(Early_draft) 29 28
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   16 16
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   16 16
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 18
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 510 510
STRING_v9.0.5_(STRING) 3256 3191
PDB_chains_(SCOP_1.75)_(PDB) 21 21
Uniprot_2018_03_genome 39216 38606
NCBI_2017_08_genome 63155 62699
TargetDB__(Targets) 142 141
Protein_Data_Bank_(all_PDB_sequenc) 170 170
Protozoadb_2010_08_(Protozoadb) 303 300

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