SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for t-snare proteins superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a t-snare proteins domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   72 72
Pan_troglodytes_76_2.1.4   (Chimpanzee)   17 17
Gorilla_gorilla_76_3.1   (Western gorilla)   19 19
Pongo_abelii_76_2   (Sumatran orangutan)   17 17
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   18 18
Papio_anubis_76   (Olive baboon)   19 19
Macaca_mulatta_76_1   (Rhesus monkey)   28 28
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   37 37
Otolemur_garnettii_76_3   (Small-eared galago)   22 22
Microcebus_murinus_76_1   (Gray mouse lemur)   15 15
Rattus_norvegicus_76_5.0   (Norway rat)   18 18
Mus_musculus_76_38   (House mouse)   38 38
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   14 13
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   17 17
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   18 17
Cavia_porcellus_76_3   (Domestic guinea pig)   16 16
Oryctolagus_cuniculus_76_2   (Rabbit)   20 20
Ochotona_princeps_76   (American pika)   17 16
Tupaia_belangeri_76   (Northern tree shrew)   14 13
Sus_scrofa_76_10.2   (Pig)   24 24
Bos_taurus_76_3.1   (Cattle)   18 18
Ovis_aries_76_3.1   (Sheep)   19 19
Vicugna_pacos_76_1   (Alpaca)   12 11
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15 15
Mustela_putorius_furo_76_1.0   (Domestic ferret)   17 17
Ailuropoda_melanoleuca_76_1   (Giant panda)   21 21
Canis_familiaris_76_3.1   (Dog)   23 23
Felis_catus_76_6.2   (Domestic cat)   16 16
Equus_caballus_76_2   (Horse)   17 17
Myotis_lucifugus_76_2.0   (Little brown bat)   18 18
Pteropus_vampyrus_76_1   (Large flying fox)   18 17
Sorex_araneus_76_1   (European shrew)   12 11
Erinaceus_europaeus_76   (Western European hedgehog)   10 9
Procavia_capensis_76_1   (Cape rock hyrax)   17 16
Loxodonta_africana_76_3   (African savanna elephant)   24 23
Echinops_telfairi_76   (Small Madagascar hedgehog)   12 12
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   23 23
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12 11
Macropus_eugenii_76_1.0   (Tammar wallaby)   16 15
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   19 19
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   16 16
Ornithorhynchus_anatinus_76_5   (Platypus)   15 15
Saccoglossus_kowalevskii_v3.0 22 22
Petromyzon_marinus_76_7.0   (Sea lamprey)   10 10
Meleagris_gallopavo_76_2   (Turkey)   15 15
Gallus_gallus_76_4   (Chicken)   14 14
Anas_platyrhynchos_76_1.0   (Mallard)   12 12
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   17 16
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   22 22
Anolis_carolinensis_76_2.0   (Green anole)   19 19
Xenopus_laevis_   (African clawed frog)   31 31
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   23 23
Latimeria_chalumnae_76_1   (Coelacanth)   23 23
Lepisosteus_oculatus_76   (Spotted gar)   19 19
Gadus_morhua_76_1   (Atlantic cod)   21 21
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   19 19
Takifugu_rubripes_76_4   (Torafugu)   40 39
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   32 32
Oryzias_latipes_76_1   (Japanese medaka)   27 27
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   20 20
Poecilia_formosa_76   (Amazon molly)   22 22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   28 28
Astyanax_mexicanus_76   (Mexican tetra)   27 27
Danio_rerio_76_9   (Zebrafish)   37 37
Oikopleura_dioica 8 8
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9 9
Ciona_intestinalis_76   (Vase tunicate)   9 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10 10
Adineta_vaga 27 27
Octopus_bimaculoides_280 12 12
Crassostrea_gigas_22   (Pacific oyster)   8 8
Lottia_gigantea_   (Owl limpet)   8 8
Helobdella_robusta_ 12 12
Capitella_sp._I_ 12 12
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 8
Heliconius_melpomene_   (Postman butterfly)   7 7
Bombyx_mori_   (Domestic silkworm)   5 5
Nasonia_vitripennis_   (Jewel wasp)   6 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   17 17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   9 9
Linepithema_humile_v1.1   (Argentine ant)   10 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   10 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   7 7
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   10 10
Atta_cephalotes_v1.1 10 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 9
Lucilia_cuprina   (Australian sheep blowfly)   11 9
Drosophila_grimshawi_1.3 9 9
Drosophila_willistoni_1.3 11 11
Drosophila_pseudoobscura_2.13 10 10
Drosophila_persimilis_1.3 9 9
Drosophila_suzukii 7 7
Drosophila_yakuba_1.3 8 8
Drosophila_simulans_1.3 9 9
Drosophila_sechellia_1.3 8 8
Drosophila_melanogaster_76_5   (Fruit fly)   17 17
Drosophila_erecta_1.3 8 8
Drosophila_ananassae_1.3 9 9
Drosophila_virilis_1.2 9 9
Drosophila_mojavensis_1.3 12 12
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   15 15
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11 11
Anopheles_darlingi_22   (American malaria mosquito)   8 8
Anopheles_gambiae_49_3j   (African malaria mosquito)   11 11
Tribolium_castaneum_3.0   (Red flour beetle)   11 11
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   8 8
Acyrthosiphon_pisum_   (Pea aphid)   7 7
Rhodnius_prolixus_22 13 13
Daphnia_pulex_   (Common water flea)   12 12
Strigamia_maritima_22 10 8
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   8 8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 8
Pristionchus_pacificus_ 8 8
Meloidogyne_incognita_   (Southern root-knot nematode)   7 7
Meloidogyne_hapla_ 6 6
Onchocerca_volvulus_22 7 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   12 12
Caenorhabditis_japonica_ 9 9
Caenorhabditis_brenneri_ 12 12
Caenorhabditis_remanei_ 12 12
Caenorhabditis_elegans_76_235   (Roundworm)   11 11
Caenorhabditis_briggsae_2 9 9
Trichinella_spiralis_22 4 4
Hymenolepis_microstoma_ 8 8
Echinococcus_multilocularis_ 11 11
Echinococcus_granulosus_ 11 11
Taenia_solium_   (Pork tapeworm)   9 9
Schistosoma_mansoni_ 14 14
Mnemiopsis_leidyi   (Sea walnut)   9 9
Thelohanellus_kitauei 3 3
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   11 11
Hydra_vulgaris 10 8
Amphimedon_queenslandica 24 23
Trichoplax_adhaerens_ 12 12
Proterospongia_sp._ATCC_50818_ 7 7
Monosiga_brevicollis_ 7 7
Sphaeroforma_arctica_JP610_ 11 11
Capsaspora_owczarzaki_ATCC_30864_ 9 9
Conidiobolus_coronatus_NRRL28638_v1.0 6 6
Mortierella_verticillata_NRRL_6337_ 11 11
Phycomyces_blakesleeanus_ 9 9
Rhizopus_oryzae_RA_99-880_ 9 9
Mucor_circinelloides_ 14 14
Rhizomucor_miehei_CAU432_ 9 9
Malassezia_globosa_CBS_7966_ 12 12
Sporisorium_reilianum_22 6 6
Ustilago_maydis_ 6 6
Mixia_osmundae_IAM_14324_v1.0 7 7
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 7 7
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 8 8
Melampsora_laricis-populina_ 7 7
Rhodotorula_graminis_WP1_v1.0 9 9
Sporobolomyces_roseus_IAM_13481_ 5 5
Microbotryum_violaceum_22 10 10
Wallemia_sebi_v1.0 6 6
Sphaerobolus_stellatus_v1.0 12 12
Piloderma_croceum_F_1598_v1.0 8 8
Serpula_lacrymans_var._lacrymans_S7.9_ 7 7
Coniophora_puteana 7 7
Hydnomerulius_pinastri_v2.0 7 7
Paxillus_rubicundulus_Ve08.2h10_v1.0 7 7
Pisolithus_microcarpus_441_v1.0 7 7
Pisolithus_tinctorius_Marx_270_v1.0 7 7
Scleroderma_citrinum_Foug_A_v1.0 7 7
Coprinopsis_cinerea_okayama7_130_v3 8 8
Pleurotus_ostreatus_   (Oyster mushroom)   8 8
Amanita_thiersii_Skay4041_v1.0 8 8
Amanita_muscaria_Koide_v1.0   (Fly agaric)   8 8
Galerina_marginata_v1.0 10 10
Hebeloma_cylindrosporum_h7_v2.0 8 8
Laccaria_bicolor_S238N-H82_ 8 8
Agaricus_bisporus_var._bisporus_ 8 8
Schizophyllum_commune_ 9 9
Stereum_hirsutum_FP-91666_SS1__v1.0 8 8
Heterobasidion_annosum_ 7 7
Gloeophyllum_trabeumv1.0 7 7
Punctularia_strigosozonata_v1.0 5 5
Sebacina_vermifera_MAFF_305830_v1.0 6 6
Fomitiporia_mediterranea_v1.0 6 6
Tulasnella_calospora_AL13/4D_v1.0 7 7
Postia_placenta_ 11 11
Wolfiporia_cocos_MD-104_SS10__v1.0 7 7
Fomitopsis_pinicolav1.0 7 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 7 7
Phanerochaete_chrysosporium_RP-78_2.1 7 7
Dichomitus_squalens 9 9
Trametes_versicolor_v1.0 6 6
Tremella_mesenterica_   (Witches' butter)   6 6
Daldinia_eschscholzii_EC12_v1.0 7 7
Apiospora_montagnei_NRRL_25634_v1.0 8 8
Magnaporthe_poae_ATCC_64411_22 6 6
Magnaporthe_grisea_70-15_ 7 7
Podospora_anserina_ 7 7
Sporotrichum_thermophile_ATCC_42464_ 8 8
Thielavia_terrestris_NRRL_8126_ 7 7
Chaetomium_globosum_CBS_148.51_ 7 7
Neurospora_tetrasperma_ 7 7
Neurospora_discreta_FGSC_8579_ 7 7
Neurospora_crassa_OR74A_ 7 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   7 7
Verticillium_albo-atrum_VaMs.102_ 6 6
Verticillium_dahliae_VdLs.17_ 7 7
Acremonium_alcalophilumv_1.0 8 8
Glomerella_graminicola_22 7 7
Fusarium_graminearum_ 8 8
Nectria_haematococca_mpVI_ 7 7
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 6
Fusarium_verticillioides_7600_ 6 6
Trichoderma_asperellum_CBS_433.97_v1.0 7 7
Trichoderma_atroviride_ 6 6
Trichoderma_citrinoviride_v1.0 7 7
Trichoderma_reesei_1.2 7 7
Trichoderma_virens_Gv29-8_ 7 7
Trichoderma_longibrachiatum_ATCC_18648_v1.0 7 7
Trichoderma_harzianum_CBS_226.95_v1.0 7 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   8 8
Botrytis_cinerea_B05.10_ 6 6
Sclerotinia_sclerotiorum_ 7 7
Blumeria_graminis_22 7 7
Didymella_exigua_CBS_183.55_v1.0 7 7
Leptosphaeria_maculans_22 8 8
Setosphaeria_turcica_v1.0 9 9
Cochliobolus_miyabeanus_ATCC_44560_v1.0 7 7
Cochliobolus_victoriae_FI3_v1.0 7 7
Cochliobolus_carbonum_26-R-13_v1.0 8 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   8 8
Alternaria_brassicicola_ 7 7
Cochliobolus_lunatus_m118_v2.0 7 7
Pyrenophora_teres_f._teres_22 7 7
Pyrenophora_tritici-repentis_ 6 6
Stagonospora_nodorum_ 7 7
Mycosphaerella_graminicola_IPO323_ 7 7
Zasmidium_cellare_ATCC_36951_v1.0 7 7
Dothistroma_septosporum 7 7
Septoria_musiva_v1.0 7 7
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 7 7
Paracoccidioides_brasiliensis_Pb18_ 6 6
Coccidioides_posadasii_RMSCC_3488_ 6 6
Coccidioides_immitis_RS_ 7 7
Ajellomyces_dermatitidis_SLH14081_ 7 7
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7 7
Microsporum_canis_CBS_113480_ 6 6
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 6 6
Arthroderma_benhamiae_CBS_112371_ 6 6
Trichophyton_tonsurans_CBS_112818_ 6 6
Trichophyton_rubrum_CBS_118892_ 6 6
Uncinocarpus_reesii_1704_ 6 6
Aspergillus_zonatus_v1.0 7 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 6 6
Aspergillus_acidus_v1.0 6 6
Aspergillus_fumigatus_Af293 6 6
Aspergillus_brasiliensis_v1.0 6 6
Aspergillus_nidulans_FGSC_A4_ 6 6
Aspergillus_sydowii_v1.0 6 6
Aspergillus_versicolor_v1.0 6 6
Aspergillus_glaucus 6 6
Aspergillus_carbonarius_ITEM_5010_ 6 6
Neosartorya_fischeri_NRRL_181_ 7 7
Aspergillus_terreus_NIH2624_ 5 5
Aspergillus_tubingensis_v1.0 6 6
Aspergillus_wentii_v1.0 7 7
Aspergillus_oryzae_RIB40_ 6 6
Aspergillus_niger_22 6 6
Aspergillus_niger_ATCC_1015_ 3 3
Aspergillus_flavus_NRRL3357_ 6 6
Aspergillus_clavatus_NRRL_1_ 6 6
Penicillium_marneffei_ATCC_18224_ 7 7
Tuber_melanosporum_Mel28_22 7 7
Tuber_melanosporum_Vittad_   (Perigord truffle)   7 7
Hansenula_polymorpha_v2.0 7 7
Dekkera_bruxellensis_CBS_2499_v2.0 7 7
Pichia_membranifaciensv1.0 8 8
Candida_tanzawaensis_NRRL_Y-17324__v1.0 7 7
Candida_dubliniensis_CD36_ 9 9
Candida_tropicalis_MYA-3404_ 7 7
Candida_parapsilosis_ 8 8
Candida_albicans_SC5314 9 9
Lodderomyces_elongisporus_NRRL_YB-4239_ 7 7
Babjeviella_inositovora_NRRL_Y-12698_v1.0 8 8
Pichia_stipitis_CBS_6054_ 8 8
Candida_guilliermondii_ATCC_6260_ 7 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 7 7
Debaromyces_hansenii 7 7
Wickerhamomyces_anomalus 6 6
Pichia_pastoris_GS115_ 8 8
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6 6
Yarrowia_lipolytica_CLIB122 10 10
Candida_lusitaniae_ATCC_42720_ 7 7
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 7 7
Vanderwaltozyma_polyspora_DSM_70294_ 6 6
Candida_glabrata_CBS138 9 9
Kluyveromyces_thermotolerans_CBS_6340 7 7
Lachancea_kluyveri_ 7 7
Kluyveromyces_waltii 6 6
Ashbya_gossypii_ATCC_10895_ 7 7
Zygosaccharomyces_rouxii_ 7 7
Saccharomyces_mikatae_MIT 8 8
Saccharomyces_paradoxus_MIT 8 8
Saccharomyces_cerevisiae_76   (Baker's yeast)   8 8
Saccharomyces_bayanus_MIT 8 8
Kluyveromyces_lactis 7 7
Schizosaccharomyces_cryophilus_OY26_22 7 7
Schizosaccharomyces_octosporus_yFS286_ 7 7
Schizosaccharomyces_japonicus_yFS275_ 6 6
Schizosaccharomyces_pombe   (Fission yeast)   6 6
Catenaria_anguillulae_PL171_v1.0 11 11
Allomyces_macrogynus_ATCC_38327_ 22 22
Spizellomyces_punctatus_DAOM_BR117_ 9 9
Dictyostelium_discoideum 14 14
Dictyostelium_purpureum_ 10 10
Entamoeba_dispar_1.2 5 5
Entamoeba_invadens_1.2 6 6
Entamoeba_histolytica_1 7 7
Selaginella_moellendorffii_ 33 33
Pinus_taeda   (Loblolly pine)   13 13
Picea_abies   (Norway spruce)   12 12
Eucalyptus_grandis_v201   (Rose gum)   40 40
Theobroma_cacao_B97-61/B2_v1   (Cacao)   23 23
Gossypium_raimondii_v221 124 124
Citrus_clementina_v165 46 46
Citrus_sinensis_v154   (Sweet orange)   45 45
Thellungiella_halophila_v173 31 31
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   47 47
Capsella_rubella_v183 29 29
Arabidopsis_lyrata_   (Lyrate rockcress)   30 30
Arabidopsis_thaliana_10   (Thale cress)   37 37
Carica_papaya_   (Papaya)   22 22
Medicago_truncatula_   (Barrel medic)   43 43
Phaseolus_vulgaris_v186   (French bean)   35 35
Glycine_max_v109   (Soybean)   65 65
Cucumis_sativus_v122   (Cucumber)   36 36
Fragaria_vesca_   (Wild strawberry)   25 25
Malus_domestica_v196   (Apple)   67 67
Prunus_persica_v139   (Peach)   25 25
Linum_usitatissimum_v200   (Flax)   42 42
Manihot_esculenta_v147   (Cassava)   33 33
Populus_trichocarpa_v156   (Black cottonwood)   39 39
Vitis_vinifera_   (Wine grape)   24 24
Mimulus_guttatus_v140   (Spotted monkey flower)   32 32
Solanum_lycopersicum_v.2.3   (Tomato)   25 25
Solanum_tuberosum_   (Potato)   42 42
Actinidia_chinensis_Hongyang_ 41 41
Aquilegia_coerulea_v195 33 33
Triticum_urartu_22 23 23
Triticum_aestivum_22   (Bread wheat)   60 60
Aegilops_tauschii_22 17 17
Brachypodium_distachyon_   (Stiff brome)   29 29
Oryza_barthii_22   (African wild rice)   22 22
Oryza_meridionalis_22 23 23
Oryza_glumaepatula_22 29 28
Oryza_glaberrima   (African rice)   21 21
Oryza_punctata_22 26 26
Oryza_nivara_22 24 24
Oryza_brachyantha_22   (Malo sina)   21 21
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   27 27
Oryza_sativa_v193   (Rice)   27 27
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   22 22
Panicum_virgatum_v202   (Switchgrass)   51 51
Setaria_italica_v164   (Foxtail millet)   25 25
Zea_mays_subsp._mays_   (Maize)   39 38
Zea_mays_v181   (Maize)   49 48
Sorghum_bicolor_   (Sorghum)   23 23
Musa_balbisiana   (Balbis banana)   36 35
Musa_acuminata_22   (Wild Malaysian banana)   37 37
Amborella_trichopoda_22 20 20
Physcomitrella_patens 27 27
Coccomyxa_subellipsoidea_sp._C-169_v2 7 7
Asterochloris_sp._Cgr/DA1pho_v1.0 6 6
Chlorella_variabilis_sp._NC64A_ 7 7
Chlorella_vulgaris_ 7 7
Volvox_carteri_f._nagariensis_ 6 6
Volvox_carteri_v199 7 7
Chlamydomonas_reinhardtii_4.0 9 9
Ostreococcus_sp._RCC809_ 6 6
Ostreococcus_lucimarinus_CCE9901_ 7 7
Ostreococcus_tauri_ 7 7
Bathycoccus_prasinos_ 5 5
Micromonas_sp._RCC299_ 7 7
Micromonas_pusilla_CCMP1545_v3.0 8 8
Cyanidioschyzon_merolae_strain_10D_22 7 7
Cyanidioschyzon_merolae 7 7
Porphyridium_purpureum_02_2012 5 5
Thecamonas_trahens_ATCC_50062_ 8 8
Bigelowiella_natans_CCMP2755_22 13 13
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 9 9
Leishmania_mexicana_2.4 7 7
Leishmania_major_strain_Friedlin_ 7 7
Leishmania_infantum_JPCM5_2.4 8 8
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 10 10
Trypanosoma_vivax_ 5 5
Trypanosoma_cruzi_strain_CL_Brener 8 8
Trypanosoma_congolense_2.4 8 8
Trypanosoma_brucei_gambiense_v4.1 7 7
Trypanosoma_brucei_TREU927_v4.1 6 6
Ectocarpus_siliculosus 9 9
Aureococcus_anophagefferens_ 5 5
Albugo_laibachii_22 13 13
Pythium_iwayamai_DAOM_BR242034_22 14 14
Pythium_arrhenomanes_ATCC_12531_22 10 10
Pythium_ultimum_v1.7-2 15 15
Pythium_aphanidermatum_DAOM_BR444_22 12 12
Pythium_irregulare_DAOM_BR486_22 11 11
Pythium_vexans_DAOM_BR484_22 11 11
Phytophthora_ramorum_1.1   (Sudden oak death agent)   13 13
Phytophthora_sojae_1.1 12 12
Phytophthora_infestans_T30-4_ 12 12
Phytophthora_capsici_ 13 13
Hyaloperonospora_arabidopsidis_22 13 13
Phaeodactylum_tricornutumCCAP_1055/1 6 6
Fragilariopsis_cylindrus 12 11
Thalassiosira_pseudonana_CCMP1335 7 7
Perkinsus_marinus_ATCC_50983_ 14 14
Paramecium_tetraurelia_ 28 28
Tetrahymena_thermophila_SB210_1_ 16 16
Ichthyophthirius_multifiliis_strain_G5_ 4 4
Cryptosporidium_hominis 4 4
Cryptosporidium_muris 5 5
Cryptosporidium_parvum_Iowa_II 4 4
Neospora_caninum 5 5
Toxoplasma_gondii_VEG 5 5
Toxoplasma_gondii_ME49 5 5
Toxoplasma_gondii_GT1 5 5
Babesia_bovis_T2Bo_ 14 14
Theileria_parva__ 6 6
Theileria_annulata 8 8
Plasmodium_falciparum_3D7_ 6 6
Plasmodium_vivax_SaI-1_7.0 8 8
Plasmodium_knowlesi_strain_H_ 7 7
Plasmodium_yoelii_ssp._yoelii_1_ 6 6
Plasmodium_chabaudi_ 8 7
Plasmodium_berghei_ANKA_ 8 8
Symbiodinium_minutum_clade_B1_v1.2 15 15
Naegleria_gruberi_ 14 14
Trichomonas_vaginalis_ 18 18
Guillardia_theta_CCMP2712_v1.0_ 6 6
Emiliania_huxleyi_CCMP1516_ 14 14
Rivularia_sp._PCC_7116 1 1
Anabaena_sp._90 1 1
Alkaliphilus_oremlandii_OhILAs 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Klebsiella_oxytoca_E718 1 1
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Enterobacter_sp._638 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Pyrolobus_fumarii_1A 1 1
Pyrobaculum_aerophilum_str._IM2 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   45 45
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14 14
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   11 11
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10 10
Cryptococcus_neoformans_var._grubii_H99_ 6 6
Cryptococcus_neoformans_B-3501A_ 6 6
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 6 6
Paracoccidioides_brasiliensis_Pb03_ 6 6
Coccidioides_posadasii_str._Silveira_ 6 6
Coccidioides_immitis_RMSCC_3703_ 6 6
Coccidioides_immitis_RMSCC_2394_ 6 6
Coccidioides_immitis_H538.4_ 5 5
Ajellomyces_dermatitidis_ER-3_ 7 7
Histoplasma_capsulatum_H143 7 7
Histoplasma_capsulatum_H88 7 7
Histoplasma_capsulatum_G186AR 8 8
Aspergillus_fumigatus_A1163_ 6 6
Candida_albicans_WO-1_ 9 9
Saccharomyces_cerevisiae_UC5 7 7
Saccharomyces_cerevisiae_PW5 6 6
Saccharomyces_cerevisiae_FL100 4 4
Saccharomyces_cerevisiae_CLIB382 1 1
Saccharomyces_cerevisiae_CLIB324 7 7
Saccharomyces_cerevisiae_CBS7960 8 8
Saccharomyces_cerevisiae_YJM269 8 8
Saccharomyces_cerevisiae_T7 8 8
Saccharomyces_cerevisiae_FostersB 8 8
Saccharomyces_cerevisiae_FostersO 8 8
Saccharomyces_cerevisiae_VL3 8 8
Saccharomyces_cerevisiae_Vin13 7 7
Saccharomyces_cerevisiae_LalvinQA23 8 8
Saccharomyces_cerevisiae_AWRI796 7 7
Saccharomyces_cerevisiae_Sigma1278b 8 8
Saccharomyces_cerevisiae_W303 8 8
Saccharomyces_cerevisiae_JAY291 8 8
Saccharomyces_cerevisiae_AWRI1631 5 5
Saccharomyces_cerevisiae_YPS163 6 6
Saccharomyces_cerevisiae_M22 3 3
Saccharomyces_cerevisiae_T73 5 5
Saccharomyces_cerevisiae_CLIB215 7 7
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 8 8
Saccharomyces_cerevisiae_YJM789 8 8
Saccharomyces_cerevisiae_RM11-1a 8 8
Saccharomyces_cerevisiae_RM11-1a_ 8 8
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   8 8
Schizosaccharomyces_pombe_972h-_ 6 6
Batrachochytrium_dendrobatidis_JEL423_ 8 8
Batrachochytrium_dendrobatidis_JAM81_ 8 8
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   24 23
Hordeum_vulgare_22   (Domesticated barley)   20 20
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   23 23
Trypanosoma_brucei_Lister_427_v4.1 6 6
Neospora_caninum_Nc-Liverpool_6.2 5 5
Plasmodium_falciparum_HB3_ 4 4
Plasmodium_falciparum_Dd2_ 2 2
Cyanothece_sp._PCC_7822 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_D9 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1 1
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_LL3 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_amyloliquefaciens_DSM_7 1 1
Helicobacter_pylori_83 1 1
Dickeya_dadantii_Ech586 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   21 21
Pan_troglodytes_69_2.1.4   (Chimpanzee)   16 16
Gorilla_gorilla_69_3.1   (Western gorilla)   16 16
Pongo_abelii_69_2   (Sumatran orangutan)   17 17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   17 17
Macaca_mulatta_69_1   (Rhesus monkey)   17 17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   18 18
Otolemur_garnettii_69_3   (Small-eared galago)   21 21
Microcebus_murinus_69_1   (Gray mouse lemur)   15 15
Rattus_norvegicus_69_3.4   (Norway rat)   14 14
Mus_musculus_69_38   (House mouse)   16 16
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   14 13
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   17 17
Cavia_porcellus_69_3   (Domestic guinea pig)   16 16
Oryctolagus_cuniculus_69_2   (Rabbit)   18 18
Ochotona_princeps_69   (American pika)   17 16
Tupaia_belangeri_69   (Northern tree shrew)   14 13
Sus_scrofa_69_10.2   (Pig)   18 18
Bos_taurus_69_3.1   (Cattle)   18 18
Vicugna_pacos_69_1   (Alpaca)   12 11
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15 15
Mustela_putorius_furo_69_1.0   (Domestic ferret)   17 17
Ailuropoda_melanoleuca_69_1   (Giant panda)   17 17
Canis_familiaris_69_3.1   (Dog)   17 17
Felis_catus_69   (Domestic cat)   15 15
Equus_caballus_69_2   (Horse)   16 16
Myotis_lucifugus_69_2.0   (Little brown bat)   17 17
Pteropus_vampyrus_69_1   (Large flying fox)   18 17
Sorex_araneus_69_1   (European shrew)   12 11
Erinaceus_europaeus_69   (Western European hedgehog)   10 9
Procavia_capensis_69_1   (Cape rock hyrax)   17 16
Loxodonta_africana_69_3   (African savanna elephant)   20 19
Echinops_telfairi_69   (Small Madagascar hedgehog)   12 12
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12 11
Macropus_eugenii_69_1.0   (Tammar wallaby)   16 15
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15 15
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   16 16
Ornithorhynchus_anatinus_69_5   (Platypus)   14 14
Petromyzon_marinus_69_7.0   (Sea lamprey)   9 9
Meleagris_gallopavo_69_2   (Turkey)   13 13
Gallus_gallus_69_2   (Chicken)   13 13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   16 15
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   18 18
Anolis_carolinensis_69_2.0   (Green anole)   18 18
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   16 16
Latimeria_chalumnae_69_1   (Coelacanth)   17 17
Gadus_morhua_69_1   (Atlantic cod)   21 21
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18 18
Takifugu_rubripes_69_4   (Torafugu)   22 21
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   20 20
Oryzias_latipes_69_1   (Japanese medaka)   20 20
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   20 20
Oreochromis_niloticus_69_1.0   (Nile tilapia)   23 23
Danio_rerio_69_9   (Zebrafish)   22 22
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 7
Ciona_intestinalis_69   (Vase tunicate)   9 9
Drosophila_melanogaster_69_5   (Fruit fly)   10 10
Caenorhabditis_elegans_69_215   (Roundworm)   10 10
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   8 8
Arabidopsis_thaliana_10   (Thale cress)   27 27

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   78 78
Homo_sapiens__(NCBI_version)   (Human)   27 27
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   15 15
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   9 9
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   5 5
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 3
Lotus_japonicus__(Early_assembly) 25 25
Malus_x_domestica_(Duplicate)   (Apple)   67 67
Ricinus_communis__(Early_assembly)   (Castor bean)   22 22
Nicotiana_benthamiana_0.4.4_(Early_draft) 44 44
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   24 24
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   25 25
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 18
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 123 123
Protozoadb_2010_08_(Protozoadb) 230 230
STRING_v9.0.5_(STRING) 1373 1370
Uniprot_2018_03_genome 17430 17357
NCBI_2017_08_genome 20241 20229
PDB_chains_(SCOP_1.75)_(PDB) 13 13
TargetDB__(Targets) 30 30
Protein_Data_Bank_(all_PDB_sequenc) 39 39

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]