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Domain combinations for Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   44 44
Pan_troglodytes_76_2.1.4   (Chimpanzee)   12 12
Gorilla_gorilla_76_3.1   (Western gorilla)   21 21
Pongo_abelii_76_2   (Sumatran orangutan)   12 12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   13 13
Papio_anubis_76   (Olive baboon)   16 16
Macaca_mulatta_76_1   (Rhesus monkey)   12 12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   20 20
Otolemur_garnettii_76_3   (Small-eared galago)   10 10
Microcebus_murinus_76_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_76_5.0   (Norway rat)   11 11
Mus_musculus_76_38   (House mouse)   18 18
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   9 9
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   10 10
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10 10
Cavia_porcellus_76_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_76_2   (Rabbit)   11 11
Ochotona_princeps_76   (American pika)   7 7
Tupaia_belangeri_76   (Northern tree shrew)   5 5
Sus_scrofa_76_10.2   (Pig)   8 8
Bos_taurus_76_3.1   (Cattle)   11 11
Ovis_aries_76_3.1   (Sheep)   13 13
Vicugna_pacos_76_1   (Alpaca)   6 6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   6 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   10 10
Canis_familiaris_76_3.1   (Dog)   13 13
Felis_catus_76_6.2   (Domestic cat)   9 9
Equus_caballus_76_2   (Horse)   9 9
Myotis_lucifugus_76_2.0   (Little brown bat)   8 8
Pteropus_vampyrus_76_1   (Large flying fox)   7 7
Sorex_araneus_76_1   (European shrew)   4 4
Erinaceus_europaeus_76   (Western European hedgehog)   4 4
Procavia_capensis_76_1   (Cape rock hyrax)   6 6
Loxodonta_africana_76_3   (African savanna elephant)   14 14
Echinops_telfairi_76   (Small Madagascar hedgehog)   6 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   8 8
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   15 15
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   16 16
Ornithorhynchus_anatinus_76_5   (Platypus)   10 10
Saccoglossus_kowalevskii_v3.0 10 10
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_76_2   (Turkey)   9 9
Gallus_gallus_76_4   (Chicken)   9 9
Anas_platyrhynchos_76_1.0   (Mallard)   8 8
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 8
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 9
Anolis_carolinensis_76_2.0   (Green anole)   8 8
Xenopus_laevis_   (African clawed frog)   24 24
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_76_1   (Coelacanth)   10 10
Lepisosteus_oculatus_76   (Spotted gar)   13 13
Gadus_morhua_76_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   9 9
Takifugu_rubripes_76_4   (Torafugu)   25 25
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   13 13
Oryzias_latipes_76_1   (Japanese medaka)   12 12
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10 10
Poecilia_formosa_76   (Amazon molly)   10 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   11 11
Astyanax_mexicanus_76   (Mexican tetra)   10 10
Danio_rerio_76_9   (Zebrafish)   11 11
Oikopleura_dioica 3 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   8 8
Ciona_intestinalis_76   (Vase tunicate)   5 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 15 15
Octopus_bimaculoides_280 4 4
Crassostrea_gigas_22   (Pacific oyster)   5 5
Lottia_gigantea_   (Owl limpet)   6 6
Helobdella_robusta_ 8 8
Capitella_sp._I_ 9 9
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   13 13
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 4
Linepithema_humile_v1.1   (Argentine ant)   4 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4 4
Atta_cephalotes_v1.1 4 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4 4
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 5 5
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 4 4
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 5 5
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 5 5
Drosophila_melanogaster_76_5   (Fruit fly)   9 9
Drosophila_erecta_1.3 5 5
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 4 4
Drosophila_mojavensis_1.3 5 5
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 4
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   4 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 4 4
Daphnia_pulex_   (Common water flea)   5 5
Strigamia_maritima_22 7 7
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 8 8
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 4 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   9 9
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 6 6
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 5 5
Mnemiopsis_leidyi   (Sea walnut)   5 5
Thelohanellus_kitauei 6 6
Acropora_digitifera_v1.0 4 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 5
Hydra_vulgaris 5 5
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 5 5
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 3 3
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 4 4
Conidiobolus_coronatus_NRRL28638_v1.0 2 2
Mortierella_verticillata_NRRL_6337_ 6 6
Phycomyces_blakesleeanus_ 5 5
Rhizopus_oryzae_RA_99-880_ 7 7
Mucor_circinelloides_ 5 5
Rhizomucor_miehei_CAU432_ 4 4
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4 4
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 3 3
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 3 3
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 3 3
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 2 2
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 3 3
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 2 2
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 2 2
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 3 3
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 3 3
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 2 2
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   2 2
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 3 3
Podospora_anserina_ 3 3
Sporotrichum_thermophile_ATCC_42464_ 3 3
Thielavia_terrestris_NRRL_8126_ 3 3
Chaetomium_globosum_CBS_148.51_ 3 3
Neurospora_tetrasperma_ 3 3
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 3 3
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 3 3
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 3 3
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 2 2
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 2 2
Cochliobolus_lunatus_m118_v2.0 2 2
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 2 2
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 2 2
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_zonatus_v1.0 4 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 3
Penicillium_chrysogenum_v1.0 3 3
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 4 4
Neosartorya_fischeri_NRRL_181_ 3 3
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 5 5
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 4 4
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 2 2
Wickerhamomyces_anomalus 3 3
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 3 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 2 2
Kluyveromyces_thermotolerans_CBS_6340 2 2
Lachancea_kluyveri_ 2 2
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 2 2
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 4 4
Schizosaccharomyces_japonicus_yFS275_ 2 2
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 1 1
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 12 12
Pinus_taeda   (Loblolly pine)   10 10
Picea_abies   (Norway spruce)   12 12
Eucalyptus_grandis_v201   (Rose gum)   17 17
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8 8
Gossypium_raimondii_v221 53 53
Citrus_clementina_v165 18 18
Citrus_sinensis_v154   (Sweet orange)   21 21
Thellungiella_halophila_v173 18 18
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   16 16
Capsella_rubella_v183 14 12
Arabidopsis_lyrata_   (Lyrate rockcress)   18 16
Arabidopsis_thaliana_10   (Thale cress)   22 19
Carica_papaya_   (Papaya)   24 24
Medicago_truncatula_   (Barrel medic)   24 24
Phaseolus_vulgaris_v186   (French bean)   20 20
Glycine_max_v109   (Soybean)   34 34
Cucumis_sativus_v122   (Cucumber)   11 11
Fragaria_vesca_   (Wild strawberry)   8 8
Malus_domestica_v196   (Apple)   18 18
Prunus_persica_v139   (Peach)   8 8
Linum_usitatissimum_v200   (Flax)   18 18
Manihot_esculenta_v147   (Cassava)   19 19
Populus_trichocarpa_v156   (Black cottonwood)   23 23
Vitis_vinifera_   (Wine grape)   12 12
Mimulus_guttatus_v140   (Spotted monkey flower)   10 10
Solanum_lycopersicum_v.2.3   (Tomato)   10 10
Solanum_tuberosum_   (Potato)   20 20
Actinidia_chinensis_Hongyang_ 16 16
Aquilegia_coerulea_v195 20 20
Triticum_urartu_22 14 14
Triticum_aestivum_22   (Bread wheat)   22 22
Aegilops_tauschii_22 13 13
Brachypodium_distachyon_   (Stiff brome)   21 21
Oryza_barthii_22   (African wild rice)   21 21
Oryza_meridionalis_22 26 26
Oryza_glumaepatula_22 40 40
Oryza_glaberrima   (African rice)   16 16
Oryza_punctata_22 29 27
Oryza_nivara_22 26 26
Oryza_brachyantha_22   (Malo sina)   20 20
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   24 24
Oryza_sativa_v193   (Rice)   23 23
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   17 17
Panicum_virgatum_v202   (Switchgrass)   29 29
Setaria_italica_v164   (Foxtail millet)   17 17
Zea_mays_subsp._mays_   (Maize)   34 34
Zea_mays_v181   (Maize)   37 37
Sorghum_bicolor_   (Sorghum)   19 19
Musa_balbisiana   (Balbis banana)   26 26
Musa_acuminata_22   (Wild Malaysian banana)   28 28
Amborella_trichopoda_22 5 5
Physcomitrella_patens 6 6
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 5 5
Volvox_carteri_f._nagariensis_ 5 5
Volvox_carteri_v199 5 5
Chlamydomonas_reinhardtii_4.0 5 5
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 4 4
Micromonas_pusilla_CCMP1545_v3.0 4 4
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 4 4
Bigelowiella_natans_CCMP2755_22 9 9
Cyanophora_paradoxa_ 1 1
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 2 2
Leishmania_infantum_JPCM5_2.4 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2 2
Trypanosoma_vivax_ 2 2
Trypanosoma_cruzi_strain_CL_Brener 2 2
Trypanosoma_congolense_2.4 3 3
Trypanosoma_brucei_gambiense_v4.1 2 2
Trypanosoma_brucei_TREU927_v4.1 2 2
Ectocarpus_siliculosus 4 4
Aureococcus_anophagefferens_ 6 6
Albugo_laibachii_22 11 10
Pythium_iwayamai_DAOM_BR242034_22 9 8
Pythium_arrhenomanes_ATCC_12531_22 6 6
Pythium_ultimum_v1.7-2 8 8
Pythium_aphanidermatum_DAOM_BR444_22 9 8
Pythium_irregulare_DAOM_BR486_22 9 9
Pythium_vexans_DAOM_BR484_22 9 8
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 5
Phytophthora_sojae_1.1 8 7
Phytophthora_infestans_T30-4_ 9 9
Phytophthora_capsici_ 6 6
Hyaloperonospora_arabidopsidis_22 9 8
Phaeodactylum_tricornutumCCAP_1055/1 3 3
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 9 9
Tetrahymena_thermophila_SB210_1_ 3 3
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 3 3
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 14 12
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 6 6

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   22 22
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 2 2
Paracoccidioides_brasiliensis_Pb03_ 2 2
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 3 3
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 1 1
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 3 3
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 8
Hordeum_vulgare_22   (Domesticated barley)   16 16
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   22 22
Trypanosoma_brucei_Lister_427_v4.1 2 2
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 3 3
Plasmodium_falciparum_Dd2_ 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   19 19
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_69_3.1   (Western gorilla)   16 16
Pongo_abelii_69_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   10 10
Macaca_mulatta_69_1   (Rhesus monkey)   7 7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_69_3   (Small-eared galago)   10 10
Microcebus_murinus_69_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_69_3.4   (Norway rat)   11 11
Mus_musculus_69_38   (House mouse)   9 9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   9 9
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   10 10
Cavia_porcellus_69_3   (Domestic guinea pig)   10 10
Oryctolagus_cuniculus_69_2   (Rabbit)   10 10
Ochotona_princeps_69   (American pika)   7 7
Tupaia_belangeri_69   (Northern tree shrew)   5 5
Sus_scrofa_69_10.2   (Pig)   7 7
Bos_taurus_69_3.1   (Cattle)   10 10
Vicugna_pacos_69_1   (Alpaca)   6 6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   6 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   9 9
Canis_familiaris_69_3.1   (Dog)   10 10
Felis_catus_69   (Domestic cat)   5 5
Equus_caballus_69_2   (Horse)   9 9
Myotis_lucifugus_69_2.0   (Little brown bat)   8 8
Pteropus_vampyrus_69_1   (Large flying fox)   7 7
Sorex_araneus_69_1   (European shrew)   4 4
Erinaceus_europaeus_69   (Western European hedgehog)   4 4
Procavia_capensis_69_1   (Cape rock hyrax)   6 6
Loxodonta_africana_69_3   (African savanna elephant)   10 10
Echinops_telfairi_69   (Small Madagascar hedgehog)   6 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   14 14
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   15 15
Ornithorhynchus_anatinus_69_5   (Platypus)   9 9
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   9 9
Gallus_gallus_69_2   (Chicken)   7 7
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 9
Anolis_carolinensis_69_2.0   (Green anole)   8 8
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9 9
Latimeria_chalumnae_69_1   (Coelacanth)   10 10
Gadus_morhua_69_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9 9
Takifugu_rubripes_69_4   (Torafugu)   9 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   10 10
Oryzias_latipes_69_1   (Japanese medaka)   10 10
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10 10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10 10
Danio_rerio_69_9   (Zebrafish)   9 9
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_69   (Vase tunicate)   5 5
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   19 16

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   48 48
Homo_sapiens__(NCBI_version)   (Human)   15 15
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   9 9
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   4 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   4 4
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4 4
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 8 8
Malus_x_domestica_(Duplicate)   (Apple)   18 18
Ricinus_communis__(Early_assembly)   (Castor bean)   9 9
Nicotiana_benthamiana_0.4.4_(Early_draft) 20 19
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   10 10
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   10 10
Phoenix_dactylifera__(Early_draft)   (Date palm)   11 11
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 18 18
Protein_Data_Bank_(all_PDB_sequenc) 21 21
TargetDB__(Targets) 35 32
Protozoadb_2010_08_(Protozoadb) 54 54
STRING_v9.0.5_(STRING) 619 612
Uniprot_2018_03_genome 7789 7744
NCBI_2017_08_genome 7838 7799
PDB_chains_(SCOP_1.75)_(PDB) 3 3

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