SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SAM/Pointed domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SAM/Pointed domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   483 400
Pan_troglodytes_76_2.1.4   (Chimpanzee)   130 112
Gorilla_gorilla_76_3.1   (Western gorilla)   188 156
Pongo_abelii_76_2   (Sumatran orangutan)   132 112
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   145 121
Papio_anubis_76   (Olive baboon)   144 124
Macaca_mulatta_76_1   (Rhesus monkey)   212 180
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   280 235
Otolemur_garnettii_76_3   (Small-eared galago)   135 115
Microcebus_murinus_76_1   (Gray mouse lemur)   98 87
Rattus_norvegicus_76_5.0   (Norway rat)   159 135
Mus_musculus_76_38   (House mouse)   312 260
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   106 92
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   120 102
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   137 117
Cavia_porcellus_76_3   (Domestic guinea pig)   159 120
Oryctolagus_cuniculus_76_2   (Rabbit)   120 106
Ochotona_princeps_76   (American pika)   105 92
Tupaia_belangeri_76   (Northern tree shrew)   93 81
Sus_scrofa_76_10.2   (Pig)   145 123
Bos_taurus_76_3.1   (Cattle)   139 120
Ovis_aries_76_3.1   (Sheep)   134 114
Vicugna_pacos_76_1   (Alpaca)   65 56
Tursiops_truncatus_76_1   (Bottlenose dolphin)   124 107
Mustela_putorius_furo_76_1.0   (Domestic ferret)   132 114
Ailuropoda_melanoleuca_76_1   (Giant panda)   150 125
Canis_familiaris_76_3.1   (Dog)   178 146
Felis_catus_76_6.2   (Domestic cat)   131 112
Equus_caballus_76_2   (Horse)   151 127
Myotis_lucifugus_76_2.0   (Little brown bat)   126 112
Pteropus_vampyrus_76_1   (Large flying fox)   119 104
Sorex_araneus_76_1   (European shrew)   74 69
Erinaceus_europaeus_76   (Western European hedgehog)   82 72
Procavia_capensis_76_1   (Cape rock hyrax)   101 87
Loxodonta_africana_76_3   (African savanna elephant)   200 164
Echinops_telfairi_76   (Small Madagascar hedgehog)   94 84
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   165 136
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   59 53
Macropus_eugenii_76_1.0   (Tammar wallaby)   108 96
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   150 129
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   137 117
Ornithorhynchus_anatinus_76_5   (Platypus)   117 100
Saccoglossus_kowalevskii_v3.0 194 165
Petromyzon_marinus_76_7.0   (Sea lamprey)   68 51
Meleagris_gallopavo_76_2   (Turkey)   129 112
Gallus_gallus_76_4   (Chicken)   130 112
Anas_platyrhynchos_76_1.0   (Mallard)   129 109
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   107 95
Ficedula_albicollis_76_1.0   (Collared flycatcher)   122 107
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   144 125
Anolis_carolinensis_76_2.0   (Green anole)   138 121
Xenopus_laevis_   (African clawed frog)   182 163
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   136 115
Latimeria_chalumnae_76_1   (Coelacanth)   170 142
Lepisosteus_oculatus_76   (Spotted gar)   196 167
Gadus_morhua_76_1   (Atlantic cod)   151 126
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   211 170
Takifugu_rubripes_76_4   (Torafugu)   659 514
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   215 181
Oryzias_latipes_76_1   (Japanese medaka)   172 142
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   162 136
Poecilia_formosa_76   (Amazon molly)   174 143
Oreochromis_niloticus_76_1.0   (Nile tilapia)   244 200
Astyanax_mexicanus_76   (Mexican tetra)   174 148
Danio_rerio_76_9   (Zebrafish)   292 249
Oikopleura_dioica 26 22
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   100 74
Ciona_intestinalis_76   (Vase tunicate)   59 53
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   92 80
Adineta_vaga 120 99
Octopus_bimaculoides_280 132 92
Crassostrea_gigas_22   (Pacific oyster)   93 79
Lottia_gigantea_   (Owl limpet)   66 57
Helobdella_robusta_ 56 44
Capitella_sp._I_ 61 54
Danaus_plexippus_OGS1.0   (Monarch butterfly)   44 37
Heliconius_melpomene_   (Postman butterfly)   35 31
Bombyx_mori_   (Domestic silkworm)   38 33
Nasonia_vitripennis_   (Jewel wasp)   33 25
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   71 54
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   50 41
Linepithema_humile_v1.1   (Argentine ant)   53 45
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   47 41
Solenopsis_invicta_v.2.2.3   (Red fire ant)   43 38
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   51 43
Atta_cephalotes_v1.1 48 43
Camponotus_floridanus_v3.3   (Florida carpenter ant)   45 37
Lucilia_cuprina   (Australian sheep blowfly)   44 36
Drosophila_grimshawi_1.3 53 46
Drosophila_willistoni_1.3 49 42
Drosophila_pseudoobscura_2.13 52 45
Drosophila_persimilis_1.3 51 44
Drosophila_suzukii 48 40
Drosophila_yakuba_1.3 50 43
Drosophila_simulans_1.3 42 35
Drosophila_sechellia_1.3 50 43
Drosophila_melanogaster_76_5   (Fruit fly)   154 118
Drosophila_erecta_1.3 50 43
Drosophila_ananassae_1.3 49 43
Drosophila_virilis_1.2 50 43
Drosophila_mojavensis_1.3 51 44
Megaselia_scalaris_22 18 14
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   55 42
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   43 36
Anopheles_darlingi_22   (American malaria mosquito)   25 24
Anopheles_gambiae_49_3j   (African malaria mosquito)   50 43
Tribolium_castaneum_3.0   (Red flour beetle)   47 39
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   46 38
Acyrthosiphon_pisum_   (Pea aphid)   45 36
Rhodnius_prolixus_22 46 41
Daphnia_pulex_   (Common water flea)   58 49
Strigamia_maritima_22 60 49
Sarcoptes_scabiei 28 21
Tetranychus_urticae_   (Two-spotted spider mite)   45 40
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   41 34
Pristionchus_pacificus_ 25 21
Meloidogyne_incognita_   (Southern root-knot nematode)   32 28
Meloidogyne_hapla_ 14 12
Onchocerca_volvulus_22 27 22
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   46 34
Caenorhabditis_japonica_ 22 19
Caenorhabditis_brenneri_ 31 26
Caenorhabditis_remanei_ 39 35
Caenorhabditis_elegans_76_235   (Roundworm)   87 73
Caenorhabditis_briggsae_2 36 30
Trichinella_spiralis_22 28 23
Hymenolepis_microstoma_ 30 23
Echinococcus_multilocularis_ 27 22
Echinococcus_granulosus_ 27 22
Taenia_solium_   (Pork tapeworm)   28 24
Schistosoma_mansoni_ 33 28
Mnemiopsis_leidyi   (Sea walnut)   29 25
Thelohanellus_kitauei 7 4
Acropora_digitifera_v1.0 74 64
Nematostella_vectensis_1.0   (Starlet sea anemone)   61 53
Hydra_vulgaris 56 47
Amphimedon_queenslandica 69 62
Trichoplax_adhaerens_ 32 26
Proterospongia_sp._ATCC_50818_ 67 53
Monosiga_brevicollis_ 56 42
Sphaeroforma_arctica_JP610_ 13 13
Capsaspora_owczarzaki_ATCC_30864_ 33 30
Conidiobolus_coronatus_NRRL28638_v1.0 11 11
Mortierella_verticillata_NRRL_6337_ 12 12
Phycomyces_blakesleeanus_ 10 10
Rhizopus_oryzae_RA_99-880_ 14 14
Mucor_circinelloides_ 12 12
Rhizomucor_miehei_CAU432_ 12 12
Malassezia_globosa_CBS_7966_ 6 6
Sporisorium_reilianum_22 4 4
Ustilago_maydis_ 4 4
Mixia_osmundae_IAM_14324_v1.0 6 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 6 6
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4 4
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 6 6
Wallemia_sebi_v1.0 3 3
Sphaerobolus_stellatus_v1.0 4 4
Piloderma_croceum_F_1598_v1.0 4 4
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 4 4
Pisolithus_microcarpus_441_v1.0 4 4
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 4 4
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 5 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5 5
Galerina_marginata_v1.0 6 6
Hebeloma_cylindrosporum_h7_v2.0 7 7
Laccaria_bicolor_S238N-H82_ 8 8
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 5 5
Stereum_hirsutum_FP-91666_SS1__v1.0 5 5
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 4 4
Punctularia_strigosozonata_v1.0 4 4
Sebacina_vermifera_MAFF_305830_v1.0 4 4
Fomitiporia_mediterranea_v1.0 5 5
Tulasnella_calospora_AL13/4D_v1.0 3 3
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 4 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 5 5
Phanerochaete_chrysosporium_RP-78_2.1 3 3
Dichomitus_squalens 4 4
Trametes_versicolor_v1.0 5 5
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 7 7
Apiospora_montagnei_NRRL_25634_v1.0 7 7
Magnaporthe_poae_ATCC_64411_22 5 5
Magnaporthe_grisea_70-15_ 6 6
Podospora_anserina_ 6 6
Sporotrichum_thermophile_ATCC_42464_ 7 7
Thielavia_terrestris_NRRL_8126_ 7 7
Chaetomium_globosum_CBS_148.51_ 6 6
Neurospora_tetrasperma_ 7 7
Neurospora_discreta_FGSC_8579_ 7 7
Neurospora_crassa_OR74A_ 7 7
Cryphonectria_parasitica_   (Chestnut blight fungus)   7 7
Verticillium_albo-atrum_VaMs.102_ 5 5
Verticillium_dahliae_VdLs.17_ 7 7
Acremonium_alcalophilumv_1.0 7 7
Glomerella_graminicola_22 7 7
Fusarium_graminearum_ 8 8
Nectria_haematococca_mpVI_ 8 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 8 8
Fusarium_verticillioides_7600_ 7 7
Trichoderma_asperellum_CBS_433.97_v1.0 7 7
Trichoderma_atroviride_ 6 6
Trichoderma_citrinoviride_v1.0 6 6
Trichoderma_reesei_1.2 6 6
Trichoderma_virens_Gv29-8_ 7 7
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 6
Trichoderma_harzianum_CBS_226.95_v1.0 7 7
Amorphotheca_resinae_v1.0   (Creosote fungus)   7 7
Botrytis_cinerea_B05.10_ 8 8
Sclerotinia_sclerotiorum_ 9 9
Blumeria_graminis_22 5 5
Didymella_exigua_CBS_183.55_v1.0 7 7
Leptosphaeria_maculans_22 7 7
Setosphaeria_turcica_v1.0 7 7
Cochliobolus_miyabeanus_ATCC_44560_v1.0 7 7
Cochliobolus_victoriae_FI3_v1.0 9 9
Cochliobolus_carbonum_26-R-13_v1.0 7 7
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   7 7
Alternaria_brassicicola_ 6 6
Cochliobolus_lunatus_m118_v2.0 7 7
Pyrenophora_teres_f._teres_22 7 7
Pyrenophora_tritici-repentis_ 7 7
Stagonospora_nodorum_ 6 6
Mycosphaerella_graminicola_IPO323_ 6 6
Zasmidium_cellare_ATCC_36951_v1.0 5 5
Dothistroma_septosporum 6 6
Septoria_musiva_v1.0 5 5
Mycosphaerella_fijiensis_CIRAD86_ 5 5
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6 6
Paracoccidioides_brasiliensis_Pb18_ 7 7
Coccidioides_posadasii_RMSCC_3488_ 7 7
Coccidioides_immitis_RS_ 7 7
Ajellomyces_dermatitidis_SLH14081_ 6 6
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7 7
Microsporum_canis_CBS_113480_ 6 6
Trichophyton_equinum_CBS_127.97_ 6 6
Trichophyton_verrucosum_HKI_0517_ 7 7
Arthroderma_benhamiae_CBS_112371_ 7 7
Trichophyton_tonsurans_CBS_112818_ 8 8
Trichophyton_rubrum_CBS_118892_ 8 8
Uncinocarpus_reesii_1704_ 7 7
Aspergillus_zonatus_v1.0 6 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 6 6
Aspergillus_fumigatus_Af293 6 6
Aspergillus_brasiliensis_v1.0 7 7
Aspergillus_nidulans_FGSC_A4_ 7 7
Aspergillus_sydowii_v1.0 6 6
Aspergillus_versicolor_v1.0 6 6
Aspergillus_glaucus 6 6
Aspergillus_carbonarius_ITEM_5010_ 6 6
Neosartorya_fischeri_NRRL_181_ 6 6
Aspergillus_terreus_NIH2624_ 6 6
Aspergillus_tubingensis_v1.0 6 6
Aspergillus_wentii_v1.0 6 6
Aspergillus_oryzae_RIB40_ 4 4
Aspergillus_niger_22 5 5
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 5 5
Aspergillus_clavatus_NRRL_1_ 6 6
Penicillium_marneffei_ATCC_18224_ 6 6
Tuber_melanosporum_Mel28_22 7 7
Tuber_melanosporum_Vittad_   (Perigord truffle)   7 7
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 3 3
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 4 4
Candida_tropicalis_MYA-3404_ 4 4
Candida_parapsilosis_ 5 5
Candida_albicans_SC5314 4 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 5 5
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 4 4
Candida_guilliermondii_ATCC_6260_ 5 5
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 5 5
Wickerhamomyces_anomalus 4 4
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 4 4
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 5 5
Candida_glabrata_CBS138 5 5
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 4 4
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 5 5
Zygosaccharomyces_rouxii_ 6 6
Saccharomyces_mikatae_MIT 6 6
Saccharomyces_paradoxus_MIT 5 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   5 5
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 4 4
Schizosaccharomyces_cryophilus_OY26_22 4 4
Schizosaccharomyces_octosporus_yFS286_ 4 4
Schizosaccharomyces_japonicus_yFS275_ 4 4
Schizosaccharomyces_pombe   (Fission yeast)   4 4
Catenaria_anguillulae_PL171_v1.0 7 7
Allomyces_macrogynus_ATCC_38327_ 21 21
Spizellomyces_punctatus_DAOM_BR117_ 10 9
Dictyostelium_discoideum 24 24
Dictyostelium_purpureum_ 31 31
Entamoeba_dispar_1.2 3 3
Entamoeba_invadens_1.2 2 2
Entamoeba_histolytica_1 2 2
Selaginella_moellendorffii_ 21 21
Pinus_taeda   (Loblolly pine)   6 6
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   25 25
Theobroma_cacao_B97-61/B2_v1   (Cacao)   10 10
Gossypium_raimondii_v221 51 51
Citrus_clementina_v165 19 19
Citrus_sinensis_v154   (Sweet orange)   23 23
Thellungiella_halophila_v173 15 15
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   20 20
Capsella_rubella_v183 14 14
Arabidopsis_lyrata_   (Lyrate rockcress)   12 12
Arabidopsis_thaliana_10   (Thale cress)   16 16
Carica_papaya_   (Papaya)   8 8
Medicago_truncatula_   (Barrel medic)   14 14
Phaseolus_vulgaris_v186   (French bean)   14 14
Glycine_max_v109   (Soybean)   35 35
Cucumis_sativus_v122   (Cucumber)   16 16
Fragaria_vesca_   (Wild strawberry)   12 12
Malus_domestica_v196   (Apple)   23 23
Prunus_persica_v139   (Peach)   9 9
Linum_usitatissimum_v200   (Flax)   18 18
Manihot_esculenta_v147   (Cassava)   24 24
Populus_trichocarpa_v156   (Black cottonwood)   20 20
Vitis_vinifera_   (Wine grape)   10 10
Mimulus_guttatus_v140   (Spotted monkey flower)   15 15
Solanum_lycopersicum_v.2.3   (Tomato)   12 12
Solanum_tuberosum_   (Potato)   17 17
Actinidia_chinensis_Hongyang_ 14 14
Aquilegia_coerulea_v195 16 16
Triticum_urartu_22 8 8
Triticum_aestivum_22   (Bread wheat)   26 26
Aegilops_tauschii_22 6 6
Brachypodium_distachyon_   (Stiff brome)   14 14
Oryza_barthii_22   (African wild rice)   11 11
Oryza_meridionalis_22 12 12
Oryza_glumaepatula_22 17 17
Oryza_glaberrima   (African rice)   12 12
Oryza_punctata_22 11 11
Oryza_nivara_22 15 15
Oryza_brachyantha_22   (Malo sina)   12 12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16 16
Oryza_sativa_v193   (Rice)   16 16
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   19 19
Panicum_virgatum_v202   (Switchgrass)   19 19
Setaria_italica_v164   (Foxtail millet)   13 13
Zea_mays_subsp._mays_   (Maize)   30 30
Zea_mays_v181   (Maize)   31 31
Sorghum_bicolor_   (Sorghum)   14 14
Musa_balbisiana   (Balbis banana)   16 16
Musa_acuminata_22   (Wild Malaysian banana)   20 20
Amborella_trichopoda_22 9 9
Physcomitrella_patens 16 16
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 6 6
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 8 8
Volvox_carteri_v199 7 7
Chlamydomonas_reinhardtii_4.0 12 12
Ostreococcus_sp._RCC809_ 6 6
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 3 3
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 8 8
Micromonas_pusilla_CCMP1545_v3.0 7 7
Porphyridium_purpureum_02_2012 4 4
Thecamonas_trahens_ATCC_50062_ 17 17
Bigelowiella_natans_CCMP2755_22 61 61
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 23 20
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 2 2
Leishmania_infantum_JPCM5_2.4 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2 2
Trypanosoma_vivax_ 3 3
Trypanosoma_cruzi_strain_CL_Brener 4 4
Trypanosoma_congolense_2.4 5 5
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 27 25
Aureococcus_anophagefferens_ 10 8
Albugo_laibachii_22 20 20
Pythium_iwayamai_DAOM_BR242034_22 15 15
Pythium_arrhenomanes_ATCC_12531_22 13 13
Pythium_ultimum_v1.7-2 16 16
Pythium_aphanidermatum_DAOM_BR444_22 18 18
Pythium_irregulare_DAOM_BR486_22 17 17
Pythium_vexans_DAOM_BR484_22 14 14
Phytophthora_ramorum_1.1   (Sudden oak death agent)   16 16
Phytophthora_sojae_1.1 15 15
Phytophthora_infestans_T30-4_ 16 16
Phytophthora_capsici_ 12 12
Hyaloperonospora_arabidopsidis_22 5 5
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 3 3
Perkinsus_marinus_ATCC_50983_ 2 2
Paramecium_tetraurelia_ 31 31
Tetrahymena_thermophila_SB210_1_ 8 7
Ichthyophthirius_multifiliis_strain_G5_ 4 4
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 3 3
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 1 1
Plasmodium_falciparum_3D7_ 4 4
Plasmodium_vivax_SaI-1_7.0 4 4
Plasmodium_knowlesi_strain_H_ 4 4
Plasmodium_yoelii_ssp._yoelii_1_ 3 3
Plasmodium_chabaudi_ 4 4
Plasmodium_berghei_ANKA_ 4 4
Symbiodinium_minutum_clade_B1_v1.2 39 39
Naegleria_gruberi_ 26 26
Trichomonas_vaginalis_ 9 9
Guillardia_theta_CCMP2712_v1.0_ 52 50
Emiliania_huxleyi_CCMP1516_ 23 22
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Burkholderia_phymatum_STM815 2 2
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 3 3
Nitrosomonas_eutropha_C91 1 1
Nitrosomonas_europaea_ATCC_19718 1 1
Ruegeria_pomeroyi_DSS-3 1 1
Sinorhizobium_medicae_WSM419 2 2
Sinorhizobium_meliloti_AK83 2 2
Agrobacterium_radiobacter_K84 1 1
Bradyrhizobium_japonicum_USDA_110 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   177 155
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   108 86
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   55 47
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   29 25
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   60 50
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 7 7
Paracoccidioides_brasiliensis_Pb03_ 5 5
Coccidioides_posadasii_str._Silveira_ 7 7
Coccidioides_immitis_RMSCC_3703_ 6 6
Coccidioides_immitis_RMSCC_2394_ 7 7
Coccidioides_immitis_H538.4_ 6 6
Ajellomyces_dermatitidis_ER-3_ 6 6
Histoplasma_capsulatum_H143 7 7
Histoplasma_capsulatum_H88 7 7
Histoplasma_capsulatum_G186AR 6 6
Aspergillus_fumigatus_A1163_ 6 6
Candida_albicans_WO-1_ 4 4
Saccharomyces_cerevisiae_UC5 5 5
Saccharomyces_cerevisiae_PW5 5 5
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CBS7960 4 4
Saccharomyces_cerevisiae_YJM269 4 4
Saccharomyces_cerevisiae_T7 5 5
Saccharomyces_cerevisiae_FostersB 4 4
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 3 3
Saccharomyces_cerevisiae_Vin13 4 4
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 5 5
Saccharomyces_cerevisiae_Sigma1278b 5 5
Saccharomyces_cerevisiae_W303 5 5
Saccharomyces_cerevisiae_JAY291 5 5
Saccharomyces_cerevisiae_AWRI1631 3 3
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_CLIB215 3 3
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 5 5
Saccharomyces_cerevisiae_YJM789 5 5
Saccharomyces_cerevisiae_RM11-1a 5 5
Saccharomyces_cerevisiae_RM11-1a_ 4 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5 5
Schizosaccharomyces_pombe_972h-_ 4 4
Batrachochytrium_dendrobatidis_JEL423_ 7 7
Batrachochytrium_dendrobatidis_JAM81_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11 11
Hordeum_vulgare_22   (Domesticated barley)   18 18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   10 10
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 4 4
Plasmodium_falciparum_Dd2_ 3 3
Burkholderia_sp._YI23 2 2
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_GR4 5 5
Sinorhizobium_meliloti_Rm41 3 3
Sinorhizobium_meliloti_SM11 3 3
Sinorhizobium_meliloti_BL225C 4 4
Sinorhizobium_meliloti_1021 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Bradyrhizobium_sp._S23321 2 2
Bradyrhizobium_japonicum_USDA_6 3 3

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   142 120
Pan_troglodytes_69_2.1.4   (Chimpanzee)   129 111
Gorilla_gorilla_69_3.1   (Western gorilla)   132 113
Pongo_abelii_69_2   (Sumatran orangutan)   125 106
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   125 105
Macaca_mulatta_69_1   (Rhesus monkey)   124 106
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   128 110
Otolemur_garnettii_69_3   (Small-eared galago)   129 109
Microcebus_murinus_69_1   (Gray mouse lemur)   98 87
Rattus_norvegicus_69_3.4   (Norway rat)   130 109
Mus_musculus_69_38   (House mouse)   131 111
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   106 92
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   109 96
Cavia_porcellus_69_3   (Domestic guinea pig)   142 110
Oryctolagus_cuniculus_69_2   (Rabbit)   115 102
Ochotona_princeps_69   (American pika)   105 92
Tupaia_belangeri_69   (Northern tree shrew)   93 81
Sus_scrofa_69_10.2   (Pig)   119 101
Bos_taurus_69_3.1   (Cattle)   128 109
Vicugna_pacos_69_1   (Alpaca)   65 56
Tursiops_truncatus_69_1   (Bottlenose dolphin)   124 107
Mustela_putorius_furo_69_1.0   (Domestic ferret)   130 113
Ailuropoda_melanoleuca_69_1   (Giant panda)   129 109
Canis_familiaris_69_3.1   (Dog)   134 114
Felis_catus_69   (Domestic cat)   93 84
Equus_caballus_69_2   (Horse)   127 111
Myotis_lucifugus_69_2.0   (Little brown bat)   122 108
Pteropus_vampyrus_69_1   (Large flying fox)   119 104
Sorex_araneus_69_1   (European shrew)   74 69
Erinaceus_europaeus_69   (Western European hedgehog)   82 72
Procavia_capensis_69_1   (Cape rock hyrax)   101 87
Loxodonta_africana_69_3   (African savanna elephant)   129 110
Echinops_telfairi_69   (Small Madagascar hedgehog)   94 84
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   79 68
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   59 53
Macropus_eugenii_69_1.0   (Tammar wallaby)   108 96
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   121 104
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   128 110
Ornithorhynchus_anatinus_69_5   (Platypus)   107 91
Petromyzon_marinus_69_7.0   (Sea lamprey)   55 45
Meleagris_gallopavo_69_2   (Turkey)   113 98
Gallus_gallus_69_2   (Chicken)   120 105
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   104 92
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   111 97
Anolis_carolinensis_69_2.0   (Green anole)   130 113
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   111 96
Latimeria_chalumnae_69_1   (Coelacanth)   135 116
Gadus_morhua_69_1   (Atlantic cod)   148 123
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   164 134
Takifugu_rubripes_69_4   (Torafugu)   162 132
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   169 140
Oryzias_latipes_69_1   (Japanese medaka)   138 112
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   162 136
Oreochromis_niloticus_69_1.0   (Nile tilapia)   180 149
Danio_rerio_69_9   (Zebrafish)   172 146
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   36 31
Ciona_intestinalis_69   (Vase tunicate)   54 48
Drosophila_melanogaster_69_5   (Fruit fly)   51 43
Caenorhabditis_elegans_69_215   (Roundworm)   30 26
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5 5
Arabidopsis_thaliana_10   (Thale cress)   13 13

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   500 412
Homo_sapiens__(NCBI_version)   (Human)   254 202
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   130 110
Heliconius_numata__(Incomplete) 7 7
Loa_loa_v3.3_(Request)   (Eye worm)   26 21
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   28 23
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   25 20
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 9 9
Malus_x_domestica_(Duplicate)   (Apple)   23 23
Ricinus_communis__(Early_assembly)   (Castor bean)   11 11
Nicotiana_benthamiana_0.4.4_(Early_draft) 27 27
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   12 12
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12 12
Phoenix_dactylifera__(Early_draft)   (Date palm)   5 5
NCBI_plasmid_sequences_(Plasmids) 26 26
PDB_chains_(SCOP_1.75)_(PDB) 33 33
Protein_Data_Bank_(all_PDB_sequenc) 240 215
TargetDB__(Targets) 148 140
NCBI_viral_sequences_(Viral) 5 5
UniProt__viral_sequences_(Viral) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 513 513
Protozoadb_2010_08_(Protozoadb) 102 102
STRING_v9.0.5_(STRING) 4943 4258
Uniprot_2018_03_genome 53726 45231
NCBI_2017_08_genome 107223 84014

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